BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G43695.1

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg948793 jgi|Araly1|948793|scaffold_800680.1                        230    4e-60


> Ahg948793 jgi|Araly1|948793|scaffold_800680.1
Length=335

 Score =  230 bits (124),  Expect = 4e-60
 Identities = 163/181 (90%), Gaps = 6/181 (3%)
 Strand=Plus/Plus

Query  39   AGTGATGAGTATCGTTACTGTTCGAAATGTTGAGGCGAAAAGGTTATTACTTGAAGAAAT  98
            |||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct  17   AGTGATGAGTATTGTTACAGTTCGAAATGTTGAGGCAAAAAGGTTATTACTTGAAGAAAT  76

Query  99   TCCTCAG-TTG--CA---TCATGAAGGTTCGCCGCAGGTAGTGAAATTACTGGATGATGA  152
            ||||||| |||  ||   |||||||||||| || ||||||||| ||||||  ||||||||
Sbjct  77   TCCTCAGATTGTGCAACATCATGAAGGTTCACCACAGGTAGTGCAATTACAAGATGATGA  136

Query  153  CTGCATGGATGGATGTCATATGAAATGTATTCCTAACAACAGAATTACTCCTTGTTTATG  212
            ||||||||| || |||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct  137  CTGCATGGAAGGGTGTCATATGAGATGTATTCCTAATAACAGAATTACTCCTTGTTTATG  196

Query  213  T  213
            |
Sbjct  197  T  197



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7599463939


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5