BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43700.1
Length=1168
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494639 jgi|Araly1|494639|fgenesh2_kg.8__455__AT5G43700.1 1688 0.0
Ahg919100 jgi|Araly1|919100|scaffold_100381.1 411 8e-114
Ahg946923 jgi|Araly1|946923|scaffold_703152.1 217 2e-55
> Ahg494639 jgi|Araly1|494639|fgenesh2_kg.8__455__AT5G43700.1
Length=1112
Score = 1688 bits (914), Expect = 0.0
Identities = 1026/1077 (95%), Gaps = 20/1077 (2%)
Strand=Plus/Plus
Query 1 GCCTCAAAGTTGCTGCTACTGTTTACTACCCGACAGCTTTAGCTTTTGCCTTTGTCCTTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCCTCAAAGTTGCTGCTACTGTTTACTACCCGACAGCTTTAGCTTTTGCCTTTGTCCTTA 60
Query 61 AATCAAGTTAATCCCATTTTTTCTAAATTACCAAAAAAGTGACTTTTCAATTCCTATAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATCAAGTTAATCCCATTTTTTCTAAATTACCAAAAAAGTGACTTTTCAATTCCTATAAA 120
Query 121 ACAATCTTCTTCACAAAGCCTCTTATCTCATCAACAAGTCTTTCTCTCTCTCTAGacaac 180
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 ACACTCTTCTTCACAAAGCCTCTTATCTCATCAACAAGTCTTTCTCTCTCT--AGACAAC 178
Query 181 cacaagaacacaaaacacacaaaaacaaaGAGGTTCTTTCTTTGAAGAAGAAATGGAAAA 240
|| ||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct 179 CATAAGAACACAAAACACACAAAAACAAAGT--TTCTTTCTTTGAAGA-GAAATGGAGAA 235
Query 241 AGTTGATGTTTATGATGAGCTTGTTAACCTAAAGGCAACAGAGCTGAGATTGGGATTACC 300
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 236 AGTTGATGTTTATGATGAGTTTGTTAACCTTAAGGCAACAGAGCTGAGATTGGGATTACC 295
Query 301 AGGGACAGAAGAAACTGTTTCTTGTGGAAAAAGCAACAAAAGAGTTTTACCTGAA-GCTA 359
|||||||||||||||||||||||| ||||||||||||||||||| ||||||| || | ||
Sbjct 296 AGGGACAGAAGAAACTGTTTCTTGCGGAAAAAGCAACAAAAGAGCTTTACCT-AATGATA 354
Query 360 CTGAGAAAGAGATTGAATCCACTGGAAAAACTGAAACCGCTTCTCCTCCAAAGGCTCAGA 419
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 355 CTGAGAAAGAGATTGAATCCACTGGAAAAACCGAAACCGCTTCTCCTCCAAAGGCTCAGA 414
Query 420 TTGTTGGATGGCCACCAGTTAGATCTTACAGAAAGAACAATGTTCAGACAAAGAAGAGTG 479
||||||||||||||||||||||||||||||||||||||||| |||| |||||||| | ||
Sbjct 415 TTGTTGGATGGCCACCAGTTAGATCTTACAGAAAGAACAATATTCAAACAAAGAATAATG 474
Query 480 AATCTGAAGGTCAAGGAAACTATGTGAAAGTAAGTATGGATGGTGCTCCATATCTAAGGA 539
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 475 AATCTGAAGGTCAAGGAAACTATGTGAAAGTGAGTATGGATGGTGCTCCATATCTAAGGA 534
Query 540 AGATAGATCTAACGATGTATAAACAATATCCAGAGTTGATGAAATCACTTGAAAACATGT 599
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 535 AGATAGATCTAACTATGTATAAACAATACCCAGAGTTGATGAAATCACTTGAAAACATGT 594
Query 600 TTAAATTCTCTGTGGGAGAATATTTTGAGAGAGAAGGATATAAAGGCTCAGACTTTGTAC 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 595 TTAAATTCTCTGTGGGAGAATATTTTGAGAGAGAAGGATATAAAGGCTCAGACTTTGTTC 654
Query 660 CTACTTATGAAGACAAAGATGGTGATTGGATGCTTGTTGGTGATGTTCCTTGGGAGATGT 719
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CTACTTATGAAGATAAAGATGGTGATTGGATGCTTGTTGGTGATGTTCCTTGGGAGATGT 714
Query 720 TTGTTTCGTCTTGTAAGAGGCTAAGGATCATGAAAGGATCTGAAGTTAAAGGTTTAGGTT 779
|||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||
Sbjct 715 TTGTTTCGTCTTGTAAGAGGTTAAGGATCATGAAAGGATCAGAAGTGAAAGGTTTAGGTT 774
Query 780 GTGGTGGTCTTTA-ACAAACCTAATTGAGAGA-TAAAGATCAAAGAGAAAGATTCAAAAA 837
||||| | || | ||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 775 CTGGTG-T-TTGATACA--CCTAATTGAGAGACTAAAGATCAAAGAGAAAGATTCAAAAA 830
Query 838 CAGAGTTTTTT-GTTCTGTTTCTTGAAACAGAGTAAATATAGCTCTGAAACTGCTCGGGT 896
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 831 CAGAGTTTTTTTGTTCTGTTTCTTGAAACAGAGTAAGTATAGCTCTGAAACTGCTCGGGT 890
Query 897 TCTTGGGGAGAGATG-T-TT-CATACAATCATACTTTGTGAATGTTTACCTCATCGGTAA 953
||| ||||||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 891 TCTCGGGGAGAGATGATGTTTCATACAATCATACTTTGTGAATGTTTACCTCATCGGTAA 950
Query 954 AAAGAGAGATGCTTAAAATGGTCTTAAGCATAAAAGTGTGAGAAAGATCTAAATCTAAAC 1013
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 951 AAAGAGTGATGCTTAAAATGGTCTTAAGCATATAAGTGTGAGAAAGATCTAAATCTAAAC 1010
Query 1014 TTTAGCTGTAACTCTGTCTCCATTAAAGAGAAA-GGTTTTGTGGTATTAGAAAGATC 1069
||||||||||||||||||| | |||||| |||| ||||||||| | |||||||||||
Sbjct 1011 TTTAGCTGTAACTCTGTCTGC-TTAAAG-GAAAAGGTTTTGTGATGTTAGAAAGATC 1065
> Ahg919100 jgi|Araly1|919100|scaffold_100381.1
Length=614
Score = 411 bits (222), Expect = 8e-114
Identities = 371/440 (84%), Gaps = 21/440 (5%)
Strand=Plus/Plus
Query 361 TGAGAAAGAGATTGAATC--CA-C-TGGAAAAACTGAAACCGCTTCTCCTCCAAAGGCTC 416
|||||| |||| |||||| || | || ||||||||||| | |||||| ||||||||
Sbjct 155 TGAGAAGGAGAATGAATCATCATCAAGG-AAAACTGAAACATCCCCTCCTCGAAAGGCTC 213
Query 417 AGATTGTTGGATGGCCACCAGTTAGATCTTACAGAAAGAACAATGTTCAGACAAAGAAGA 476
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 214 AGATTGTTGGATGGCCACCAGTTAGATCTTACAGGAAGAACAACATTCAGACAAAGAAGA 273
Query 477 GTGAATCTGA--A-G-G--TCAAGGAAACTATGTGAAAGTAAGTATGGATGGTGCTCCAT 530
||||||||| | | | ||| |||| ||||||||||||||||||||||||||| ||||
Sbjct 274 ATGAATCTGAGCATGAGGGTCACGGAATCTATGTGAAAGTAAGTATGGATGGTGCACCAT 333
Query 531 ATCTA-AGGAAGATAGATCTAACGATGT-ATAAACAATA-TCCAGAGTTGATGAAATCAC 587
| || ||||| |||||||| | | ||| | ||| ||| || ||||||| | ||| |
Sbjct 334 A-CTTGAGGAAAATAGATCTGA-GTTGTTACAAAGGATACTC-AGAGTTGCTTAAAGCT- 389
Query 588 TT-GAAAACATGTTTAAATTCTCTGTGGGAGAATATTTTGAGAGAGAAGGATATAAAGGC 646
|| ||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 390 TTAGAAGTGATGTTCAAATTCTCTGTGGGAGAGTATTTTGAGAGAGATGGATATAAAGGT 449
Query 647 TCAGACTTTGTACCTACTTATGAAGACAAAGATGGTGATTGGATGCTTGTTGGTGATGTT 706
||||||||||| ||||||||||||||||||||||||||||||||||| |||| || |||
Sbjct 450 TCAGACTTTGTGCCTACTTATGAAGACAAAGATGGTGATTGGATGCTCATTGGAGACGTT 509
Query 707 CCTTGGGAGATGTTTGTTTCGT-CTTGTAAGAGGCTAAGGATCATGAAAGGATCTGAAGT 765
|| |||||||||||| | | || |||| ||||| |||||||||||||||||||| ||||
Sbjct 510 CCATGGGAGATGTTTATAT-GTACTTGCAAGAGACTAAGGATCATGAAAGGATCAGAAGC 568
Query 766 TAAAGGTTTAGGTTGTGGTG 785
||||||||| | |||||||
Sbjct 569 CAAAGGTTTAAGCTGTGGTG 588
> Ahg946923 jgi|Araly1|946923|scaffold_703152.1
Length=549
Score = 217 bits (117), Expect = 2e-55
Identities = 224/274 (82%), Gaps = 14/274 (5%)
Strand=Plus/Plus
Query 500 TATGTGAAAGTAAGTATGGATGGTGCTCCATATCTAAGGAAGATAGATCT-AACGATGTA 558
||||||||||| |||||||| || || |||||||| | || |||||||| || ||||||
Sbjct 246 TATGTGAAAGTGAGTATGGACGGAGCACCATATCTCCGTAAAATAGATCTCAA-GATGTA 304
Query 559 TAAACAA-TATCCAGAG-TTGATGAAATCACTTGAAAACATGTTTAAATTCTCTGTGGGA 616
||| || ||||||||| || | ||| |||| || |||||||| || ||| | || ||
Sbjct 305 CAAA-AACTATCCAGAGCTT-CTCAAAGCACTCGAGAACATGTTCAAGTTCACAGTAGGT 362
Query 617 GAATATTTTGAGAGAGAAGGATATAAAGGCTCA-GACTTTGTACCTACTTATGAAGACAA 675
||||||| || |||||||| || ||||| ||| || |||||||||||||||||||||||
Sbjct 363 GAATATTCGGAAAGAGAAGGCTACAAAGGATCAGGA-TTTGTACCTACTTATGAAGACAA 421
Query 676 AGATGGTGATTGGATGCTTGTT-GGTGATGTTCCTTGGGAGATGTT-TGTTTCGTCTTGT 733
|||||| ||||||||| ||| | ||||||||||| ||||| ||||| | || | ||||||
Sbjct 422 AGATGGAGATTGGATG-TTGGTCGGTGATGTTCCATGGGACATGTTCTCTT-CATCTTGT 479
Query 734 -AAGAGGCTAAGGATCATGAAAGGATCTGAAGTT 766
|| | || || |||||||||||||||||||||
Sbjct 480 CAAAAA-CTCAGAATCATGAAAGGATCTGAAGTT 512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43574494131
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5