BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43720.1
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497180 jgi|Araly1|497180|fgenesh2_kg.37__5__AT5G43720.1 1548 0.0
Ahg915861 jgi|Araly1|915861|Al_scaffold_0008_612 872 0.0
Ahg356728 jgi|Araly1|356728|fgenesh1_pg.C_scaffold_8000515 741 0.0
Ahg948785 jgi|Araly1|948785|scaffold_800672.1 505 4e-142
> Ahg497180 jgi|Araly1|497180|fgenesh2_kg.37__5__AT5G43720.1
Length=965
Score = 1548 bits (838), Expect = 0.0
Identities = 924/966 (96%), Gaps = 3/966 (0%)
Strand=Plus/Plus
Query 16 CTAACGCCGAACAAAGAAGAAAAAACACAACCCCTAATTTTGGTCTCTCAACTCTTCCTC 75
|||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||
Sbjct 2 CTAACGCCGAACAAAG-A-AAAAAACACAACCCCTAATTTTTGTCTCTCAACTCTTCCTC 59
Query 76 CTTCTTCAACTTC-TAAAAAGCTTTAGCAAACTCCTTCAGCCATGGCGCACGGAGGCTAT 134
||||||||||| | | ||||||||| ||||| ||||| || ||||||||||||||| |||
Sbjct 60 CTTCTTCAACTACTTCAAAAGCTTTGGCAAAATCCTTTAGTCATGGCGCACGGAGGTTAT 119
Query 135 GCCAAGAGAAGGGATTCGGAACCAAAACAGACGGCGGGAAGCAGTCGGAGGTCGAAAGTA 194
||||||||||| | ||||||||| || ||| |||||||||| ||||||||||||||||||
Sbjct 120 GCCAAGAGAAGAGTTTCGGAACCTAATCAGGCGGCGGGAAGTAGTCGGAGGTCGAAAGTA 179
Query 195 TTGCGTGTAGAGAAGAAACCTAAGACTGTCTCCATCAAGAATCAGATGCGTTCTGTTGAA 254
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 180 TTGCGTGTAGAGAAGAAACCTAAGACTGTCTCCATCAAGAATCAGATGCGTTCCGTTGAA 239
Query 255 CGCTTTCTTCGTAAAGATTTGCCTCCTGAAGTAAGAGAGTCTCTAGTAGAGAAGTTGGAA 314
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 CGCTTTCTTCGTAAAGATTTGCCTCCTGAAGTAAGAGAGTCTTTAGTAGAGAAGTTGGAA 299
Query 315 GATTTGAAGAAGCAGCAAGACGCTCATGCCCGTCTTGCTGTTGAACGTAAAATATTCTTT 374
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 300 GATTTGAAGAAGCAGCAAGACGCTCATACCCGTCTTGCTGTTGAACGTAAAATATTCCTT 359
Query 375 AGGAACAGAAAGATTAAGTTCTTTGAGCGGAGAAAGATCGAAAGAAGCATTAGACGTCTT 434
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 360 AGGAACAGAAAGATTAAGTTCTTTGAGCGGAGAAAGATCGAAAGGAGTATTAGACGTCTT 419
Query 435 GAGAAGTTACAACGTACTTCATCTGCTCATGTGGGAGATGTAGATATAGCTGAGCAACTC 494
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 420 GAGAAGTTACAACGTACTTCATCTGCTCATGTGGGCGATACAGATATAGCTGAGCAACTA 479
Query 495 AGTAAACTCAAAGAAGATCTTGAATATGTTCGGTTCTTCCCGAAAAATGAGAAATATGTA 554
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 480 AGTAAACTCAAAGAAGACCTTGAGTATGTTCGGTTCTTCCCGAAAAATGAGAAGTATGTA 539
Query 555 TCACTTTTTACTGGAGCTGAGGATTCAGAAGTAATTGAGAAGAGAGGTAAAATGCGGCAG 614
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 TCTCTTTTTACTGGAGCTGAGGATTCAGAAGTAATTGAGAAGAGAGGTAAAATGCGGAAG 599
Query 615 CAGATCAAAGCCAATATTATTGTTGCTGCTGCTAGTGGGAAGGAGTTAGAAGAGACGGGG 674
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 600 CAGATCAAAGCCAATATTATTGTTGCTGCTGCTAGTGGGAAAGAGTTAGAAGAGACAGGG 659
Query 675 AGTGAAGATGATGGTCTTCTGGACCTTAGTGATGATGATTTCTTTGATAAAGGGAGTTCA 734
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGTGAAGACGATGGTCTTCTGGACCTTAGTGATGATGATTTCTTTGATAAAGGGAGTTCA 719
Query 735 AGCGATGAAGCAGACGCAGATGATGAATTGACTGATAAAAGCGCAAAGGAGGCTGCTTCT 794
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 720 AGCGATGAAGCAGACGCAGATGATGAATTGACCGATAAAAGCGCAAAGGAGGCTGCTTCT 779
Query 795 AGTGCTTCTGGTAGAGCAACTTCTGGCATGTCTAGTGATGAACGGAATCAGAAGCAAAAC 854
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 780 AGTGCTTCTGGTAGAGCAACTTCTGGCATGTCTAGTGATGAAAGGAATCAGAAGCAAAAC 839
Query 855 TCTGATAGAGCTTTAATGCCACCACCACAAGCAAGGTTTGAATCAAATTCTAGGAAGAAT 914
|||||||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||||
Sbjct 840 TCTGATAGGGCTTTAATGCCTCCACCACAAGCAAGGTTTGAATCAAATTATAGAAAGAAT 899
Query 915 TTATATGTACAGAGGAATGAGATGCCATCATCCTCGAGAAACAACACTTCAAACAGAAGA 974
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TCATATGTACAGAGGAATGAGATGCCATCATCCTCGAGAAACAACACTTCAAACAGAAGA 959
Query 975 AGTGAG 980
||||||
Sbjct 960 AGTGAG 965
> Ahg915861 jgi|Araly1|915861|Al_scaffold_0008_612
Length=738
Score = 872 bits (472), Expect = 0.0
Identities = 666/753 (88%), Gaps = 39/753 (5%)
Strand=Plus/Plus
Query 117 ATGGCGCACGGAGGCTATGCCAAGAGAAGGGATTCGGAACCAAAACAGACGGCGGGAAGC 176
|||||||||||||| |||||||||||||| | ||||||||| || ||| ||||||||||
Sbjct 1 ATGGCGCACGGAGGTTATGCCAAGAGAAGAGTTTCGGAACCTAATCAGGCGGCGGGAAGT 60
Query 177 AGTCGGAGGTCGAAAGTATTGCGTGTAGAGAAGAAACCTAAGACTGTCTCCATCAAGAAT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGTCGGAGGTCGAAAGTATTGCGTGTAGAGAAGAAACCTAAGACTGTCTCCATCAAGAAT 120
Query 237 CAGATGCGTTCTGTTGAACGCTTTCTTCGTAAAG--A-----TTTGC-CTC-CTGAAGTA 287
||||||||||| |||||||||||||||||||||| | ||| | ||| ||||| |
Sbjct 121 CAGATGCGTTCCGTTGAACGCTTTCTTCGTAAAGTCAGCTCCTTTTCTCTCTCTGAAATT 180
Query 288 AGAGAG-T-CTCTAGTAGAGAA-GT-T-GGAAGATTTGAAG--AAGC-AGCAAGACGCTC 339
|| | | | || | | | |||| | | || | || || | || | ||||
Sbjct 181 AG-G-GTTCCT-TTG-ATAGAATCTCTCTTAA-AGTTCCAGCCTTTCTGGCGATTTGCTC 235
Query 340 ATGCCCGTCTTGCTGTTGAACGTAAAATATTCTTTAGGAACAGAAAGATTAAGTTCTTTG 399
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 236 ATACCCGTCTTGCTGTTGAACGTAAAATATTCCTTAGGAACAGAAAGATTAAGTTCTTT- 294
Query 400 AGCGGAGAAAGATCGAAAGAAGCATTAGACGTCTTGAGAAGTTACAACGTACTTCATCTG 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 --CGGAGAAAGATCGAAAGAAGCATTAGACGTCTTGAGAAGTTACAACGTACTTCATCTG 352
Query 460 CTCATGTGGGAGATGTAGATATAGCTGAGCAACTCAGTAAACTCAAAGAAGATCTTGAAT 519
|||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 353 CTCATGTGGGAGATACAGATATAGCTGAGCAACTTAGTAAACTCAAAGAAGACCTTGAAT 412
Query 520 ATGTTCGGTT-CTTCCCGAAAAATGAGAAATATGTATCACTTTTTACTGGAGCTGAGGAT 578
||||| || | |||||||||||| |||| |||||||| |||||||||||||||||||||
Sbjct 413 ATGTTAGGGTACTTCCCGAAAAACGAGAG-TATGTATCTCTTTTTACTGGAGCTGAGGAT 471
Query 579 TCAGAAGTAATTGAGAAGAGAGGTAAAATGCGGCAGCAGATCAAAGCCAATATTATTGTT 638
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 472 TCAGAGGTAATTGAGAAGAGAGGTAAAATGCGGAAGCAGATCAAAGCCAATATTATTGTT 531
Query 639 GCTGCTGCTAGTGGGAAGGAGTTAGAAGAGACGGGGAGTGAAGATGATGGTCTTCTGGA- 697
||||||||||||||||| ||||||||| | |||| |||||||| ||||||||||||||
Sbjct 532 GCTGCTGCTAGTGGGAAAGAGTTAGAA-ACACGG--AGTGAAGACGATGGTCTTCTGGAT 588
Query 698 C----C-TTAGTGATGATGATTTCTTTGATAAAGGGAGTTCAAGCGATGAAGCAGACGCA 752
| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 589 CTGGACCTTAGTGATGATGATTTCTTTGATAAAGGGAGTTCAAGCGATGAAGCAGATGCA 648
Query 753 GATGATGAATTGACTGATAAAAGCGCAAAGGAGGCTGCTTCTAGTGCTTCTGGTAGAGCA 812
|||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||
Sbjct 649 GATGATGAATTGACCGATAAAAGCGCA--G-AGGCTGCTTCTAGTGCTTCTGGTAGAGCA 705
Query 813 ACTTCTGGCATGTCTAGTGATGAACGGAATCAG 845
||||||||| |||||||| ||||| ||||||||
Sbjct 706 ACTTCTGGCGTGTCTAGTTATGAAAGGAATCAG 738
> Ahg356728 jgi|Araly1|356728|fgenesh1_pg.C_scaffold_8000515
Length=516
Score = 741 bits (401), Expect = 0.0
Identities = 425/437 (97%), Gaps = 0/437 (0%)
Strand=Plus/Plus
Query 667 AGACGGGGAGTGAAGATGATGGTCTTCTGGACCTTAGTGATGATGATTTCTTTGATAAAG 726
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 29 AGACAGGGAGTGAAGACGATGGTCTTCTGGACCTTAGTGATGATGATTTCTTTGATAAAG 88
Query 727 GGAGTTCAAGCGATGAAGCAGACGCAGATGATGAATTGACTGATAAAAGCGCAAAGGAGG 786
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 89 GGAGTTCAAGCGATGAAGCAGACGCAGATGATGAATTGACCGATAAAAGCGCAAAGGAGG 148
Query 787 CTGCTTCTAGTGCTTCTGGTAGAGCAACTTCTGGCATGTCTAGTGATGAACGGAATCAGA 846
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 149 CTGCTTCTAGTGCTTCTGGTAGAGCAACTTCTGGCATGTCTAGTGATGAAAGGAATCAGA 208
Query 847 AGCAAAACTCTGATAGAGCTTTAATGCCACCACCACAAGCAAGGTTTGAATCAAATTCTA 906
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 209 AGCAAAACTCTGATAGGGCTTTAATGCCTCCACCACAAGCAAGGTTTGAATCAAATTATA 268
Query 907 GGAAGAATTTATATGTACAGAGGAATGAGATGCCATCATCCTCGAGAAACAACACTTCAA 966
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 GAAAGAATTCATATGTACAGAGGAATGAGATGCCATCATCCTCGAGAAACAACACTTCAA 328
Query 967 ACAGAAGAAGTGAGTCTTCATATAATGCAAGGGCTTCTGCGGCGAATTCATATAGCAGTC 1026
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 329 ACAGAAGAAGTGAGTCTTCATATAATGCAAGGGCTGCTGCGGCGAGTTCATATAGCAGTC 388
Query 1027 AGAGTAGCAACTTGAGCTCCAATTCTGATGCTCATAAACCCAAAAGGAAGAGAAGGCCTA 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 389 AGAGTAGCAACTTGAGCTCCAATTCTGATGCTCATAAACCCAAAAGGAAGAGACGGCCTA 448
Query 1087 AGAAGAAGAAGCAACAG 1103
|||||||||||||||||
Sbjct 449 AGAAGAAGAAGCAACAG 465
> Ahg948785 jgi|Araly1|948785|scaffold_800672.1
Length=511
Score = 505 bits (273), Expect = 4e-142
Identities = 301/315 (96%), Gaps = 0/315 (0%)
Strand=Plus/Plus
Query 330 CAAGACGCTCATGCCCGTCTTGCTGTTGAACGTAAAATATTCTTTAGGAACAGAAAGATT 389
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 174 CAAGACGCTCATACCCGTCTTGCTGTTGAACGTAAAATATTCCTTAGGAACAGAAAGATT 233
Query 390 AAGTTCTTTGAGCGGAGAAAGATCGAAAGAAGCATTAGACGTCTTGAGAAGTTACAACGT 449
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 234 AAGTTCTTTGAGCGGAGAAAGATCGAAAGGAGTATTAGACGTCTTGAGAAGTTACAACGT 293
Query 450 ACTTCATCTGCTCATGTGGGAGATGTAGATATAGCTGAGCAACTCAGTAAACTCAAAGAA 509
|||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||
Sbjct 294 ACTTCATCTGCTCATGTGGGCGATACAGATATAGCTGAGCAACTAAGTAAACTCAAAGAA 353
Query 510 GATCTTGAATATGTTCGGTTCTTCCCGAAAAATGAGAAATATGTATCACTTTTTACTGGA 569
|| ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 354 GACCTTGAGTATGTTCGGTTCTTCCCGAAAAATGAGAAGTATGTATCTCTTTTTACTGGA 413
Query 570 GCTGAGGATTCAGAAGTAATTGAGAAGAGAGGTAAAATGCGGCAGCAGATCAAAGCCAAT 629
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 414 GCTGAGGATTCAGAAGTAATTGAGAAGAGAGGTCAAATGCGGAAGCAGATCAAAGCCAAT 473
Query 630 ATTATTGTTGCTGCT 644
|||||||||||||||
Sbjct 474 ATTATTGTTGCTGCT 488
Score = 254 bits (137), Expect = 2e-66
Identities = 161/173 (93%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 97 TTTAGCAAACTCCTTCAGCCATGGCGCACGGAGGCTATGCCAAGAGAAGGGATTCGGAAC 156
||| ||||| ||||| || ||||||||||||||| |||||||||||||| | ||||||||
Sbjct 1 TTTGGCAAAATCCTTTAGTCATGGCGCACGGAGGTTATGCCAAGAGAAGAGTTTCGGAAC 60
Query 157 CAAAACAGACGGCGGGAAGCAGTCGGAGGTCGAAAGTATTGCGTGTAGAGAAGAAACCTA 216
| || ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTAATCAGGCGGCGGGAAGTAGTCGGAGGTCGAAAGTATTGCGTGTAGAGAAGAAACCTA 120
Query 217 AGACTGTCTCCATCAAGAATCAGATGCGTTCTGTTGAACGCTTTCTTCGTAAA 269
||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 AGACTGTCTCCATCAAGAATCAGATGCGTTCCGTTGAACGCTTTCTTCGTAAA 173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51313446282
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5