BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43750.1
Length=850
Score E
Sequences producing significant alignments: (Bits) Value
Ahg887362 jgi|Araly1|887362|Al_scaffold_0037_4 953 0.0
Ahg915863 jgi|Araly1|915863|Al_scaffold_0008_614 592 2e-168
> Ahg887362 jgi|Araly1|887362|Al_scaffold_0037_4
Length=639
Score = 953 bits (516), Expect = 0.0
Identities = 601/642 (94%), Gaps = 6/642 (1%)
Strand=Plus/Plus
Query 78 ATGGCAACGGTCACGATTCTCTCACCCAAATCGATTCCAAAGGTCACT-GATTCCAAATT 136
||||||||||||| ||||||||| ||||||||||| |||||| ||| | ||||| || ||
Sbjct 1 ATGGCAACGGTCATGATTCTCTCTCCCAAATCGATCCCAAAGATCA-TAGATTCGAAGTT 59
Query 137 CGGAGCTAGGGTTTCTGATCAGATCGTCAATGTCGTAAAATGCGGCAAATCCGGCCGGAG 196
|| | || |||| ||||||||| |||||||||||| ||||||||||| |||||||||||
Sbjct 60 TGGTGTTAAGGTTCCTGATCAGACCGTCAATGTCGTGAAATGCGGCAATTCCGGCCGGAG 119
Query 197 ATTGAAGTTAGCGAAGCTGGTCTCAGCGGCTGGATTGTCACAGATCGAACCAGACATCAA 256
||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct 120 ATTGAGGTTAGCGAAGCTGGTCTCAGCTGCTGGATTGTCACAGATTGAACCAGATATAAA 179
Query 257 CGAAGACCCGATTGGTCAATTCGAGACTAATAGCATTGAAATGGAAGATTTCAAGTATGG 316
||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 180 CGAAGACCCCATTGGTCAATTTGAGATTAATAGCATTGAAATGGAAGATTTCAAGTATGG 239
Query 317 ATATTACGATGGAGCTCATACTTACTATGAAGGAGAAGTTCAAAAGGGAACATTTTGGGG 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATATTACGATGGAGCTCATACTTACTATGAAGGAGAAGTTCAAAAGGGAACATTTTGGGG 299
Query 377 AGCAATTGCTGATGACATTGCTGCTGTGGATCAAACTAATGGGTTTCAAGGTTTGATCTC 436
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 300 AGCAATTGCTGATGACATTGCTGCTGTGGATCAAACAAATGGATTTCAAGGTTTAATCTC 359
Query 437 TT-GTATGTTTCTTCCTGCTATAGCT-CTTGGGATGTATTTTGATGCTCCGGGTGAGTAC 494
|| | ||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 360 TTTG-ATGTTTCTTCCTGCTATAGCTGCA-GGGATGTATTTTGATGCTCCGGGTGAGTAC 417
Query 495 TTGTTCATAGGTGCAGCGTTATTCACGGTAGTGTTCTGTATAATAGAGATGGATAAACCT 554
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 418 TTGTTCATAGGTGCAGCGTTGTTCACGGTAGTGTTTTGTATAATAGAGATGGATAAACCA 477
Query 555 GACCAGCCACACAACTTCGAGCCTCAGATATACAAATTGGAGAGAGGAGCTCGTGACAAG 614
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 478 GACCAGCCACACAACTTTGAGCCTCAGATATACAAATTGGAGAGAGGAGCTCGCGATAAG 537
Query 615 CTCATTAATGACTACAACACAATGAGCATTTGGGACTTTAATGACAAATATGGTGATGTA 674
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 538 CTCATTAATGATTACAACACAATGAGCATCTGGGACTTTAATGACAAGTATGGTGATGTA 597
Query 675 TGGGATTTCACCATTGAGAAAGATGATATCGCCACACGATAA 716
||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TGGGATTTCACCATTGAGAAAGATGATATCGCCACACGATAA 639
> Ahg915863 jgi|Araly1|915863|Al_scaffold_0008_614
Length=552
Score = 592 bits (320), Expect = 2e-168
Identities = 384/415 (93%), Gaps = 4/415 (1%)
Strand=Plus/Plus
Query 73 AAAAAATGGCAACGGTCACGATTCTCTCACCCAAATCGATTCCAAAGGTCACT-GATTCC 131
|||||||||||||||||| |||||| || ||||||||||| |||||| ||| | |||||
Sbjct 5 AAAAAATGGCAACGGTCATGATTCTTTCTCCCAAATCGATCCCAAAGATCA-TAGATTCG 63
Query 132 AAATTCGGAGCTAGGGTTTCTGATCAGATCGTCAATGTCGTAAAATGCGGCAAATCCGGC 191
|| || |||| || |||| ||||||||| |||||||||||| ||||||||||| ||||||
Sbjct 64 AAGTTTGGAGTTAAGGTTCCTGATCAGACCGTCAATGTCGTGAAATGCGGCAATTCCGGC 123
Query 192 CGGAGATTGAAGTTAGCGAAGCTGGTCTCAGCGGCTGGATTGTCACAGATCGAACCAGAC 251
|||||||||| |||||| |||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 124 CGGAGATTGAGGTTAGCTAAGCTGGTTTCAGCTGCTGGATTGTCACAGATTGAACCAGAT 183
Query 252 ATCAACGAAGACCCGATTGGTCAATTCGAGACTAATAGCATTGAAATGGAAGATTTCAAG 311
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 184 ATCAACGAAGACCCGATTGGTCAATTTGAGATTAATAGCATTGAAATGGAAGATTTCAAG 243
Query 312 TATGGATATTACGATGGAGCTCATACTTACTATGAAGGAGAAGTTCAAAAGGGAACATTT 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 TATGGATATTACGATGGAGCTCATACTTACTATGAAGGAGAAGTTCAAAAGGGAACATTT 303
Query 372 TGGGGAGCAATTGCTGATGACATTGCTGCTGTGGATCAAACTAATGGGTTTCAAGGTTTG 431
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 304 TGGGGAGCAATTGCTGATGACATTGCTGCTGTGGATCAAACAAATGGGTTTCAAGGTTTA 363
Query 432 ATCTCTTGTATGTTTCTTCCTGCTATAGCT-CTTGGGATGTATTTTGATGCTCCG 485
|||||||| |||||||||||||||||||| | |||||||||||||||||||||
Sbjct 364 ATCTCTTGCCTGTTTCTTCCTGCTATAGCTGCA-GGGATGTATTTTGATGCTCCG 417
Score = 220 bits (119), Expect = 1e-56
Identities = 133/140 (95%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 577 CTCAGATATACAAATTGGAGAGAGGAGCTCGTGACAAGCTCATTAATGACTACAACACAA 636
||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 413 CTCCGATATACAAATTGGAGAGAGGAGCTCGCGATAAGCTCATTAATGACTACAACACAA 472
Query 637 TGAGCATTTGGGACTTTAATGACAAATATGGTGATGTATGGGATTTCACCATTGAGAAAG 696
||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 473 TGAGCATCTGGGACTTTAATGACAAGTATGGTGATGTATGGGATTTCACAATTGAGAAAG 532
Query 697 ATGATATCGCCACACGATAA 716
| ||||||||||||||||||
Sbjct 533 ACGATATCGCCACACGATAA 552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31451406525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5