BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43760.1
Length=1841
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470398 jgi|Araly1|470398|fgenesh2_kg.1__352__AT1G04220.1 1443 0.0
Ahg356713 jgi|Araly1|356713|fgenesh1_pg.C_scaffold_8000500 1360 0.0
Ahg333105 jgi|Araly1|333105|fgenesh1_pm.C_scaffold_37000001 1330 0.0
Ahg918858 jgi|Araly1|918858|scaffold_100139.1 311 1e-83
> Ahg470398 jgi|Araly1|470398|fgenesh2_kg.1__352__AT1G04220.1
Length=1619
Score = 1443 bits (781), Expect = 0.0
Identities = 1291/1534 (84%), Gaps = 48/1534 (3%)
Strand=Plus/Plus
Query 214 CAAACAACCTCCCAAACTTTCTATTATCCGTCCGTCTCAAATACGTAAAACTCGGTTACC 273
|||| || ||||||||||| || ||||| || || || |||||||| |||||||||||||
Sbjct 99 CAAA-AAACTCCCAAACTTCCTCTTATCGGTACGCCTTAAATACGTTAAACTCGGTTACC 157
Query 274 ACTACCTAATCTCCAACGCTC-TCTACATCCTCCTCCTTCC--T-CTCCTCGCCGCAACA 329
| ||||||||||| || || | ||||||||||| |||| || | ||||||||||||||
Sbjct 158 ATTACCTAATCTCTAATGC-CGTCTACATCCTCATCCTCCCTGTCCTCCTCGCCGCAAC- 215
Query 330 ATCGCTAACCTCTCTTCTTTCACCATCAACGACCTCTCTCTCCTCTACAA-CA-C-ACTC 386
|| || |||| |||| || | || ||| ||| | ||| | ||||| || | |||
Sbjct 216 CTC-CT--CCTC-CTTCAATC-TC-TC--CGATCTCACACTCTTATACAACCACCTTCTC 267
Query 387 CGTTTCCATTTCCTCTCCGCCAC---ACTCGCCACCGCAC-TCTTAATCTCTCTCTCCAC 442
||||| |||||||| |||| | ||| || || | |||| |||| ||| ||||
Sbjct 268 AAATTCCACTTCCTCTCTTCCACTATATTCG-CA--GCCCTTCTT-ATCTTTCTAACCAC 323
Query 443 CGCT-TACTTCACCACCCGTCCCCGCCGTG-TCTTCCTCCTCGACTTCTCGTGTTACAAA 500
| || |||||||| || ||||| || | | | ||||||||||| ||| | |||||||||
Sbjct 324 C-CTCTACTTCACAACTCGTCCTCG-CAAGATATTCCTCCTCGATTTCGCTTGTTACAAA 381
Query 501 CCAGACCCTTCACTGATCTGCACTCGTGAAACATTCATGGACAGATCTCAACGTGTAGGC 560
|| ||| |||| || || ||||| || ||||| ||||||||| | ||||||||||| ||
Sbjct 382 CCCGACTCTTCTCTAATATGCACACGAGAAACGTTCATGGACCGGTCTCAACGTGTTGGT 441
Query 561 ATCTTCACAGAAGACAACTTAGCTTTCCAACAAAAGATCCTCGAAAGATCCGGTCTAGGT 620
|||||||||||||||||| | |||||||||||||||||||||||| | |||||||| ||
Sbjct 442 ATCTTCACAGAAGACAACCTCGCTTTCCAACAAAAGATCCTCGAACGCTCCGGTCTTGGA 501
Query 621 CAGAAAACTTACTTCCCTGAAGCTCTTCTT-CGTGTTCCTCCTAATCCTTGTATGGAAGA 679
|| |||||||||||||| || |||| |||| ||||| || || |||||||||||| ||
Sbjct 502 CAAAAAACTTACTTCCCGGAGGCTC-TCTTACGTGTCCCGCCGAATCCTTGTATGTCTGA 560
Query 680 AGCGAGAAAAGAGGCAGAAACAGTTATGTTCGGAGCTATTGACGCGGTTCTTGAGAAGAC 739
||| || ||||| || || || |||||||| |||||||| ||||| || |||||||| ||
Sbjct 561 AGCAAGGAAAGAAGCCGAGACGGTTATGTTTGGAGCTATAGACGCAGTGCTTGAGAAAAC 620
Query 740 CGGTGTGAAACCTAAAGATATTGGAATCCTTGTGGTGAATTGTAGCTTGTTTAATCCAAC 799
|| ||||| ||||| |||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 621 AGGAGTGAAGCCTAAGGATATTGGGATACTTGTGGTGAATTGTAGCTTGTTTAATCCGAC 680
Query 800 ACCGTCACTT-TCTGCTATGATTGTGAATAAGTATAAGCTTAGAGGCAACATTTTGAGCT 858
|| || ||| || |||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 681 GCCTTC-CTTATCAGCTATGATCGTGAATAAATATAAGCTTAGAGGAAACATTTTGAGCT 739
Query 859 ATAATCTTGGTGGAATGGGATGTAGTGCTGGCCTTATCTCCATTGATCTCGCTAAACAGA 918
||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 740 ATAATCTTGGTGGGATGGGTTGTAGTGCTGGTCTTATCTCCATTGATCTCGCTAAACAGC 799
Query 919 TGCTTCAGGTGCAACCAAACTCATACGCACTAGTGGTGAGCACAGAGAACATAACCCTAA 978
| |||||||| |||||||| ||||| |||||||| ||||||||||| |||||||||||||
Sbjct 800 TTCTTCAGGTCCAACCAAATTCATATGCACTAGTAGTGAGCACAGAAAACATAACCCTAA 859
Query 979 ACTGGTACTTAGGCAACGACCGATCAATGCTTCTATCTAACTGTATCTTCCGTATGGGCG 1038
||||||| |||||||||||||||||||||||||| || |||||||||||| | ||||| |
Sbjct 860 ACTGGTATTTAGGCAACGACCGATCAATGCTTCTCTCAAACTGTATCTTCAGAATGGGTG 919
Query 1039 GAGCCGCGGTACTTCTCTCGAACCGCTCCTCTGATCGCAGCCGTTCAAAATATCAGCTCA 1098
| || || || || ||||| ||||||| ||| || ||| |||| || ||||| || ||||
Sbjct 920 GCGCAGCCGTTCTCCTCTCTAACCGCTGCTCCGACCGCCGCCGCTCCAAATACCAACTCA 979
Query 1099 TCCATACCGTCCGTACCCACAAAGGAGCTGATGACAACGCATTTGGCTGTGTTTACCAAC 1158
|||| |||||||||||||||||||||||||| |||||||| ||| ||| ||||||||||
Sbjct 980 TCCACACCGTCCGTACCCACAAAGGAGCTGACGACAACGCCTTTAACTGCGTTTACCAAC 1039
Query 1159 GAGAAGACAACAACGCAGAAGAAACCGGCAAAATCGGAGTGTCCCTCTCTAAAAACCTAA 1218
| ||||||| | ||| | || ||| | ||||||| || || || || ||||||||||
Sbjct 1040 GCGAAGACAGCGACG-ACAACAAA----C-AAATCGGTGTCTCACTTTCCAAAAACCTAA 1093
Query 1219 TGGCGATAGCTGGAGAAGCTCTCAAGACAAACATCACAACTCTCGGACCACTAGTTCTAC 1278
|||| ||||| ||||||||||||||||| ||||| || ||||||||||| ||||| || |
Sbjct 1094 TGGCTATAGCCGGAGAAGCTCTCAAGACGAACATAACCACTCTCGGACCGCTAGTCCTTC 1153
Query 1279 CAATGTCCGAACAACTTCTCTTTTTCGCGACTCTTGTGGCCCGAAAAGTCTTCAAAGTCA 1338
||||||||||||||||||| |||||||| || || ||||| ||||||||||| || || |
Sbjct 1154 CAATGTCCGAACAACTTCTATTTTTCGCAACACTCGTGGCGCGAAAAGTCTTTAATGTGA 1213
Query 1339 AGAAAAT-AAAGCCTTACATTCCTGATTTCAAGCTAGCTTTCGAGCATTTCTGTATCCAC 1397
||||||| ||| ||||| |||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 1214 AGAAAATCAAA-CCTTATATTCCTGATTTCAAGCTAGCATTCGAGCACTTCTGCATCCAC 1272
Query 1398 GCGGGAGGTAGAGCCGTGCTCGACGAGATTGAGAAGAACTTGGAT-TTATCCGAATGGCA 1456
|||||||| ||||| |||||||| |||||||||||||| |||||| || || || |||||
Sbjct 1273 GCGGGAGGCAGAGCAGTGCTCGATGAGATTGAGAAGAATTTGGATCTT-TCTGAGTGGCA 1331
Query 1457 CATGGAGCCATCGAGGATGACGTTGAACCGGTTTGGTAACACTTCGAGTAGCTCACTTTG 1516
|||||||| || ||||||| |||||||||||||| || |||||||||||||| || ||
Sbjct 1332 TATGGAGCCTTCTCGGATGACTTTGAACCGGTTTGGGAATACTTCGAGTAGCTCGCTGTG 1391
Query 1517 GTATGAGCTTGCGTATAGTGAAGCTAAAGGAAGGATTAAGAGAGGAGATAGGACTTGGCA 1576
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1392 GTATGAGCTTGCGTATAGTGAGGCTAAAGGAAGGATTAAGAGAGGAGATAGGACTTGGCA 1451
Query 1577 GATTGCTTTTGGATCGGGTTTTAAGTGTAATAGTGCAGTTTGGAAAGCTTTGAGAACGAT 1636
|||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||| ||
Sbjct 1452 GATTGCTTTTGGGTCGGGTTTTAAGTGTAATAGTGCGGTTTGGAGAGCTTTGAGAACTAT 1511
Query 1637 TGATCCAATGGACG-AGAAGACTAATCCATGGATTGATGAGATTGATGACTTTCCTGTTC 1695
|||||| | | | ||||||||||||||||||||||||||||| |||| ||||| || |
Sbjct 1512 TGATCCG-TCCAAGGAGAAGACTAATCCATGGATTGATGAGATTCATGAGTTTCCGGTGC 1570
Query 1696 AAGTTCCTAGGATCA-CTCCCATTACATCGTCGT 1728
||||| ||||| | |||| | ||||| ||||
Sbjct 1571 CCGTTCCCAGGAT-ATCTCCGGTGACATCTTCGT 1603
> Ahg356713 jgi|Araly1|356713|fgenesh1_pg.C_scaffold_8000500
Length=813
Score = 1360 bits (736), Expect = 0.0
Identities = 782/805 (97%), Gaps = 0/805 (0%)
Strand=Plus/Plus
Query 926 GGTGCAACCAAACTCATACGCACTAGTGGTGAGCACAGAGAACATAACCCTAAACTGGTA 985
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9 GGTGCAACCAAACTCCTACGCACTAGTGGTGAGCACAGAGAACATAACCCTAAACTGGTA 68
Query 986 CTTAGGCAACGACCGATCAATGCTTCTATCTAACTGTATCTTCCGTATGGGCGGAGCCGC 1045
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 69 CTTAGGCAACGACCGATCAATGCTTCTCTCTAACTGCATCTTCCGTATGGGCGGAGCCGC 128
Query 1046 GGTACTTCTCTCGAACCGCTCCTCTGATCGCAGCCGTTCAAAATATCAGCTCATCCATAC 1105
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 129 GGTACTTCTCTCGAACCGCTCCTCGGATCGTAGCCGTTCAAAATATCAGCTCATCCACAC 188
Query 1106 CGTCCGTACCCACAAAGGAGCTGATGACAACGCATTTGGCTGTGTTTACCAACGAGAAGA 1165
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 189 CGTTCGTACCCACAAAGGAGCTGATGACAACGCATTCGGCTGTGTTTACCAACGAGAAGA 248
Query 1166 CAACAACGCAGAAGAAACCGGCAAAATCGGAGTGTCCCTCTCTAAAAACCTAATGGCGAT 1225
||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 249 CAACAACGCAGAAGAAACCGGCAAAATCGGAGTATCACTCTCTAAAAACCTAATGGCAAT 308
Query 1226 AGCTGGAGAAGCTCTCAAGACAAACATCACAACTCTCGGACCACTAGTTCTACCAATGTC 1285
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 309 AGCTGGAGAAGCTCTCAAGACAAACATCACAACTCTCGGACCACTAGTCCTACCAATGTC 368
Query 1286 CGAACAACTTCTCTTTTTCGCGACTCTTGTGGCCCGAAAAGTCTTCAAAGTCAAGAAAAT 1345
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 369 CGAACAACTTCTCTTTTTCGCGACCCTCGTGGCCCGAAAAGTCTTCAAAGTCAAGAAAAT 428
Query 1346 AAAGCCTTACATTCCTGATTTCAAGCTAGCTTTCGAGCATTTCTGTATCCACGCGGGAGG 1405
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 AAAGCCTTACATTCCCGATTTCAAGCTAGCTTTCGAGCATTTCTGTATCCACGCGGGAGG 488
Query 1406 TAGAGCCGTGCTCGACGAGATTGAGAAGAACTTGGATTTATCCGAATGGCACATGGAGCC 1465
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 489 TAGAGCCGTGCTCGACGAGATAGAGAAGAACTTGGATTTATCCGAATGGCATATGGAGCC 548
Query 1466 ATCGAGGATGACGTTGAACCGGTTTGGTAACACTTCGAGTAGCTCACTTTGGTATGAGCT 1525
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 549 ATCGAGGATGACGTTGAACCGGTTTGGAAACACTTCGAGTAGCTCACTTTGGTATGAGCT 608
Query 1526 TGCGTATAGTGAAGCTAAAGGAAGGATTAAGAGAGGAGATAGGACTTGGCAGATTGCTTT 1585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 609 TGCGTATAGTGAAGCTAAAGGAAGGATTAAGAGAGGAGATAGGACTTGGCAGATTGCGTT 668
Query 1586 TGGATCGGGTTTTAAGTGTAATAGTGCAGTTTGGAAAGCTTTGAGAACGATTGATCCAAT 1645
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 669 CGGATCGGGTTTTAAGTGTAACAGTGCGGTTTGGAAAGCTTTGAGAACGATTGATCCAAT 728
Query 1646 GGACGAGAAGACTAATCCATGGATTGATGAGATTGATGACTTTCCTGTTCAAGTTCCTAG 1705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 GGACGAGAAGACTAATCCATGGATTGATGAGATTGATGACTTTCCTGTTCAAGTTCCTAG 788
Query 1706 GATCACTCCCATTACATCGTCGTAG 1730
||||||||||||||| |||||||||
Sbjct 789 GATCACTCCCATTACGTCGTCGTAG 813
> Ahg333105 jgi|Araly1|333105|fgenesh1_pm.C_scaffold_37000001
Length=846
Score = 1330 bits (720), Expect = 0.0
Identities = 764/786 (97%), Gaps = 0/786 (0%)
Strand=Plus/Plus
Query 141 ATGAGCCATAACCAAAACCAACCTCACCGGCCAGTCCCGGTCCATGTCACAAACGCCGAG 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGCCATAACCAAAACCAACCTCACCGGCCAGTCCCGGTCCATGTCACAAACGCCGAG 60
Query 201 CCAAACCCTAACCCAAACAACCTCCCAAACTTTCTATTATCCGTCCGTCTCAAATACGTA 260
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 61 CCAAACCCTAACCCAAACAACCTCCCAAACTTTCTCTTATCCGTTCGTCTCAAATACGTA 120
Query 261 AAACTCGGTTACCACTACCTAATCTCCAACGCTCTCTACATCCTCCTCCTTCCTCTCCTC 320
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 AAACTCGGTTACCATTACCTAATCTCCAACGCTCTCTACATCCTCCTCCTCCCTCTCCTC 180
Query 321 GCCGCAACAATCGCTAACCTCTCTTCTTTCACCATCAACGACCTCTCTCTCCTCTACAAC 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCCGCAACAATCGCTAACCTCTCTTCTTTCACCATCAACGACCTCTCTCTCCTCTACAAC 240
Query 381 ACACTCCGTTTCCATTTCCTCTCCGCCACACTCGCCACCGCACTCTTAATCTCTCTCTCC 440
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 241 ACACTCCGTTTCCATTTCCTCTCCGCCACACTAGCCACCGGACTCTTAATCTCTCTCTCC 300
Query 441 ACCGCTTACTTCACCACCCGTCCCCGCCGTGTCTTCCTCCTCGACTTCTCGTGTTACAAA 500
||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 301 ACCGCCTACTTCACCACACGTCCTCGCCGTGTCTTCCTCCTCGACTTCTCATGTTACAAA 360
Query 501 CCAGACCCTTCACTGATCTGCACTCGTGAAACATTCATGGACAGATCTCAACGTGTAGGC 560
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCAGACCCTTCACTGATCTGCACTCGTGAAACATTCATGGACAGATCTCAACGTGTAGGT 420
Query 561 ATCTTCACAGAAGACAACTTAGCTTTCCAACAAAAGATCCTCGAAAGATCCGGTCTAGGT 620
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 ATCTTCACAGAAGACAACCTAGCTTTCCAACAAAAGATCCTTGAAAGATCCGGTCTAGGT 480
Query 621 CAGAAAACTTACTTCCCTGAAGCTCTTCTTCGTGTTCCTCCTAATCCTTGTATGGAAGAA 680
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 CAAAAAACTTACTTCCCTGAAGCTCTTCTTCGTGTCCCTCCTAATCCTTGTATGGAAGAA 540
Query 681 GCGAGAAAAGAGGCAGAAACAGTTATGTTCGGAGCTATTGACGCGGTTCTTGAGAAGACC 740
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCAAGAAAGGAGGCAGAGACAGTTATGTTCGGAGCTATTGACGCGGTTCTTGAGAAGACC 600
Query 741 GGTGTGAAACCTAAAGATATTGGAATCCTTGTGGTGAATTGTAGCTTGTTTAATCCAACA 800
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 601 GGTGTTAAACCTAAAGATATTGGAATCCTTGTGGTGAATTGTAGTTTGTTTAATCCAACG 660
Query 801 CCGTCACTTTCTGCTATGATTGTGAATAAGTATAAGCTTAGAGGCAACATTTTGAGCTAT 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCGTCACTTTCTGCTATGATTGTGAATAAGTATAAGCTTAGAGGCAACATTTTGAGCTAT 720
Query 861 AATCTTGGTGGAATGGGATGTAGTGCTGGCCTTATCTCCATTGATCTCGCTAAACAGATG 920
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 AATCTTGGTGGAATGGGATGTAGTGCTGGACTTATCTCCATTGATCTCGCTAAACAGATG 780
Query 921 CTTCAG 926
||||||
Sbjct 781 CTTCAG 786
> Ahg918858 jgi|Araly1|918858|scaffold_100139.1
Length=1628
Score = 311 bits (168), Expect = 1e-83
Identities = 710/959 (74%), Gaps = 87/959 (9%)
Strand=Plus/Plus
Query 702 GTTATGTTCGGAG-CTATTGACGCGGTTCTT-GAGAAGACCGGTGTGAAACCTAAAGATA 759
||||||||||||| || | || | |||| ||||| ||||| | ||||| || |
Sbjct 616 GTTATGTTCGGAGCCT-TAGATTC-CCTCTTCGAGAAAACCGGAATTAAACCGGCCGA-A 672
Query 760 -TTGGAATCCTTG-TGGTGAATTGTAGCTTGTTTAATCCAACACCGTCACTTTCTGCTAT 817
||||||| |||| | || || || ||||| || ||||| || ||||| || || || ||
Sbjct 673 GTTGGAAT-CTTGATAGTAAACTGCAGCTTATTCAATCCGACGCCGTCTCTATCAGCGAT 731
Query 818 GATTGTGAATAAGTATAAGCTTAGAGGCA-ACATTTTGAGCTATAATCTTGGTGGAATGG 876
||| ||||| | || ||| | ||| | | |||| ||||| || || || |||||||
Sbjct 732 GATCGTGAACCATTACAAGATGAGA-GAAGACATCAAAAGCTACAACCTCGGAGGAATGG 790
Query 877 GATG-TAGTGCTGGCCTT-ATCTCCATTGATCTCGCTAAAC-AGATGCTTCAGGTGC-AA 932
| || | ||| || || ||||| || |||||||| |||| | | | ||| || ||
Sbjct 791 GTTGCT-CTGCCGG-ATTAATCTCAATCGATCTCGC-AAACAACCT-CCTCA-AAGCAAA 845
Query 933 -CCAAACTCATACGCACTAGTGGTGAGCACAGAGAACATAACCCTAAACTGGTACTTAGG 991
|| || || ||||| | ||||| ||||| || ||||||||||||||||||||||| ||
Sbjct 846 CCCTAATTCTTACGCTGTCGTGGTAAGCACGGAAAACATAACCCTAAACTGGTACTTCGG 905
Query 992 CAACGACCGATCAATGCTTCTAT-CTAACTGTATCTTCCGTATGGGCGGAGCCGCGGTAC 1050
|| |||||||||||||| || | | ||||| |||||||| ||||||||||| ||| | |
Sbjct 906 AAATGACCGATCAATGCTCCTCTGC-AACTGCATCTTCCGAATGGGCGGAGCTGCGATTC 964
Query 1051 TTCTCTCGAACCGCTCCTC-TGATC-GCAGCCGTTCAAAATA-TCAGCTCATCCATAC-- 1105
| || || |||||| | | || | | || | ||||| || || ||| | || ||
Sbjct 965 TCCTTTCTAACCGC-CGACAAGACCGGAAGAAG-TCAAAGTACTC-GCTGGT-CA-ACGT 1019
Query 1106 CGTCCGTACCCACAAAGGAGCTGATGAC---AAC-GCATTTGGCTGTGTTTACCAACGAG 1161
||| || || || |||||| | || ||| ||| || || || ||| || | | ||
Sbjct 1020 CGTTCGAACGCATAAAGGATCAGACGACAAGAACTACAATT-GC-GTG--TA-C--C-AG 1071
Query 1162 AAGACAACAACGCAGAAGAAACCGGCAA-AATCGGAGTGTCCCTCT--CTAAAAACCTAA 1218
||| || ||| || || | || || |||| | ||||| || | || | | || |
Sbjct 1072 AAG-GAA-GACG-AG-AG--A--GG-AACAATC-G-GTGTCTCTTTAGCTCGAGAGCTCA 1120
Query 1219 TGGC-GATAGCTGGAGAAGCTCTCAAGACAAACATCACAACTCTCGGACC-ACTAGTTCT 1276
|| | | | || ||||| ||||| || ||||||||||| ||| | ||||| | | |||||
Sbjct 1121 TGTCTG-TTGCCGGAGACGCTCTGAAAACAAACATCACGACTTTAGGACCGA-TGGTTCT 1178
Query 1277 ACCAATGTCCGAACAACTTCTCTTTTTCGCGA-CTCTTGTGGCCCGAA--AAG-TCTTCA 1332
||| |||| |||| | | | | ||| || || | ||| | || ||| | |||
Sbjct 1179 CCCATTGTCGGAAC-A-GT-TGATGTTCTTGATTTCAT-TGGTCAAAAGGAAGATGTTC- 1233
Query 1333 AAGTCAAGAAAAT-AAAGCCTTACATTCCTGATTTCAAGCTAGCTTTCGAGCATTTCTGT 1391
||| | | ||| | ||| || || ||||| ||||||||||||||||||||||||||||||
Sbjct 1234 AAG-CTA-AAAGTGAAA-CCGTATATTCCGGATTTCAAGCTAGCTTTCGAGCATTTCTGT 1290
Query 1392 ATCCACGCGGGAGGTAGAGCCGTGCTCGACGAGATTG-AGAAGAA-CTTGGATTT-ATCC 1448
|| ||||| ||||||||||| || || ||||| | || ||||||| |||| || | |
Sbjct 1291 ATTCACGCAGGAGGTAGAGCGGTTCTAGACGA-AGTGCAGAAGAATCTTG-ATCTCAAA- 1347
Query 1449 GAATGGCACATGGAGCCATCGAGGATGACGTTGAACCGGTTTGGTAACACTTCGAGTAGC 1508
|| ||||||||||| || || || ||||| ||| ||||||||||||||||||||||||||
Sbjct 1348 GATTGGCACATGGAACCTTCTAGAATGACTTTGCACCGGTTTGGTAACACTTCGAGTAGC 1407
Query 1509 TCACTTTGGTATGAGCTTGCGTATA-GTGAAGCTAAAGGAAGGATTAAGAGA-GGAGATA 1566
|| |||||||||||| | || |||| | |||||||| || || |||| || || |||
Sbjct 1408 TCGCTTTGGTATGAGATGGCTTATACG-GAAGCTAAGGGTCGGGTTAA-AGCCGGTGATC 1465
Query 1567 GGACTT-GGCAGATTGCTTTTGGATCGGGTTTTAAGTGTAATAGTGCAGTTTGGAAAGC 1624
| |||| |||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 1466 G-ACTTTGGCAGATTGCGTTTGGATCGGGTTTCAAGTGTAATAGTGCGGTTTGGAAAGC 1523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69133794675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5