BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43790.1
Length=1475
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494626 jgi|Araly1|494626|fgenesh2_kg.8__442__AT5G43790.1 2071 0.0
> Ahg494626 jgi|Araly1|494626|fgenesh2_kg.8__442__AT5G43790.1
Length=1404
Score = 2071 bits (1121), Expect = 0.0
Identities = 1311/1403 (93%), Gaps = 12/1403 (1%)
Strand=Plus/Plus
Query 1 ATGACATCTCCAAGCACAAGCAAGAATCATCGATGCTTAAACCTAATCTCAAAATGCAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACATCTCCAAGCACAAGCAAGAATCATCGATGCTTAAACCTAATCTCAAAATGCAAA 60
Query 61 TCCTTACAAAACCTCAAACAAATCCATGCCCAAATCATCACAATCGGTCTCTCTCACCAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCCTTACAAAACCTCAAACAAATCCATGCCCAAATCATCACAATCGGTCTCTCTCACCAC 120
Query 121 ACATATCCTCTAAGTAAGCTCCTTCACTTATCCTCCACCGTCTGCTTATCCTACGCACTC 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACATATCCTCTAAGTAAACTCCTTCACTTATCCTCCACCGTCTGCTTATCCTACGCACTC 180
Query 181 TCTATCTTACGCCAAATCCCTAATCCTTCCGTCTTCCTCTACAACACTCTCATCTCTTCC 240
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 181 TCTATCTTACGCCAAATCCCAAATCCTTCCGTCTTCCTCTACAACACTCTCATCTCCTCC 240
Query 241 ATCGTCTCCAATCACAATTCCACTCAAACCCATCTCGCGTTTTCTCTCTACGATCAGATT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATCGTCTCCAATCACAATTCCACTCAAACCCATCTCGCGTTTTCTCTCTACGATCAGATT 300
Query 301 TTGAGCTCAAGATCCAATTTTGTCAGACCCAATGAATTTACGTATCCTTCTCTCTTCAAA 360
||||||||||||||||||||||| ||||| ||||||||||| || |||||| | || |||
Sbjct 301 TTGAGCTCAAGATCCAATTTTGTTAGACCTAATGAATTTACTTACCCTTCTTTATTTAAA 360
Query 361 GCCTCAGGCTTTGACG-CTCAATGGCATCGCCATGGGAGGGCTCTTCATGCCCACGTCTT 419
|| || |||||||| | | ||||||||||||||||||| |||||||||||||| |||||
Sbjct 361 GCTTCTGGCTTTGA-GACGAAATGGCATCGCCATGGGAGAGCTCTTCATGCCCATGTCTT 419
Query 420 GAAATTTC-TCGAACCGGTGAATCATGATCGGTTTGTGCAAGCTGCTTTAGTTGGGTTTT 478
|||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 420 GAAATT-CATCGAACCGGTGAATCATGATCGGTTTGTGCAAGCTGCTTTAGTTGGTTTTT 478
Query 479 ACGCTAATTGTGGTAAATTGAGAGAAGCTAGGTCTTTGTTTGAGAGAATTAGGGAACCTG 538
| || ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 479 ATGCGAATTGTGGTGAATTGAGAGAAGCTAGGTCTTTGTTTGAGAGAATTAGAGAACCTG 538
Query 539 ATTTGGCTACTTGGAACACTCTTCTTGCTGCTTACGCTAATTCCGAAGAAATTGATAGCG 598
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || |
Sbjct 539 ATTTGGCTACTTGGAACACTCTTCTTGCTGCTTACGCTAATTCTGAAGAAACTGAGAGTG 598
Query 599 ATGAAGAGGTTTTGTTGTTGTTTATGAGAATGCAAGTAAGACCTAACGAGCTTTCTCTTG 658
|||||||||||||| ||||||| | ||||||||||| ||||||||||||||||||||||
Sbjct 599 ATGAAGAGGTTTTGAAGTTGTTTGTTAGAATGCAAGTGAGACCTAACGAGCTTTCTCTTG 658
Query 659 TAGCTTTGATTAAATCTTGTGCGAATTTAGGTGAATTTGTGAG-AGGTGTTTGGGCTCAT 717
|||||||||| ||||||||||||||||||||||| ||| || | ||||||||||||||||
Sbjct 659 TAGCTTTGATCAAATCTTGTGCGAATTTAGGTGAGTTT-TGGGGAGGTGTTTGGGCTCAT 717
Query 718 GTGTATGTCTTGAAGAATAATCTGACCCTGAACCAGTTTGTGGGAACTTCTCTGATCGAT 777
|||||| |||||||||| ||| |||| || |||||||||||||| |||||||||||||||
Sbjct 718 GTGTATCTCTTGAAGAAAAATTTGACTCTAAACCAGTTTGTGGGGACTTCTCTGATCGAT 777
Query 778 CTTTACTCGAAATGCGGATGTTTGAGTTTCGCACGCAAAGTGTTCGATGAAATGTCTCAG 837
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 778 TTTTACTCGAAATGCGGATGTTTGAGTTTCGCACGCCAAGTGTTCGATGAAATGTCTGAA 837
Query 838 AGAGACGTATCGTGTTACAATGCAATGATTCGTGGTTTAGCAGTTCACGGGTTTGGTCAA 897
||||| |||| |||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 838 AGAGATATATCATGTTTTAACGCAATGATTCGTGGTTTAGCGGTTCACGGGTTTGGTCAA 897
Query 898 GAAGGTATTGAATTGTACAAGAGCTTGATCTCTCAAGGATTAGTCCCGGACAGTGCAACT 957
|||||||||||||||||||| ||||||||||| |||||||||||||| |||| |||||||
Sbjct 898 GAAGGTATTGAATTGTACAATAGCTTGATCTCCCAAGGATTAGTCCCAGACAATGCAACT 957
Query 958 TTCGTGGTGACGATATCAGCATGTTCGCACTCGGGTCTAGTCGACGAAGGTCTCCAAATA 1017
|||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||
Sbjct 958 TTCGTGGTGACGATATCAGCATGTTCGCACTCGGGTTTAGTTGATGAAGGTCTCCAAATA 1017
Query 1018 TTTAACTCAATGAAAGCGGTTTACGGGATCGAGCCTAAAGTTGAGCATTACGGATGTTTA 1077
||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TTTCACTCGATGAAAACGGTTTACGGGATCGAGCCTAAAGTTGAGCATTACGGATGTTTA 1077
Query 1078 GTTGATCTACTAGGCCGATCCGGGAGGTTAGAAGAAGCGGAAGAATGCATCAAGAAGATG 1137
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GTTGATCTACTGGGCCGATCGGGGAGGTTAGAAGAAGCGGAAGAATGCATCAAGAAGATG 1137
Query 1138 CCGGTGAAGCCGAATGCGACACTATGGAGATCGTTTCTAGGGTCATCTCAAA-CACATGG 1196
||| ||||||| ||||||| ||||||||||||||||| |||||| |||||| | || |
Sbjct 1138 CCGATGAAGCCAAATGCGATGCTATGGAGATCGTTTCTTGGGTCAGCTCAAATC-CACGA 1196
Query 1197 TGACTTTGAGAGGGGTGAGATTGCGCTAAAGCATTTGTTGGGGTTAGAATTCGAAAACAG 1256
|||||| ||||||||||| ||||| |||| || ||||||||||||||||||||||||||
Sbjct 1197 TGACTTGGAGAGGGGTGAAATTGCATTAAAACAATTGTTGGGGTTAGAATTCGAAAACAG 1256
Query 1257 CGGAAATTATGTGCTCTTGTCGAATATTTATGCCGGAGTTAACCGTTGGACTGACGTAGA 1316
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1257 CGGAAATTATGTGCTCTTGTCAAATATTTACGCCGGAGTTAACCGTTGGACTGACGTAGA 1316
Query 1317 GAAGACCCGGGAACTTATGAAAGACCACCGTGTCAATAAATCTCCGGGGATTAGTACTCT 1376
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1317 GAAGACCCGGGAACTTATGAAAGACCACCGTGTCAATAAATCTCCGGGAATTAGTACTAT 1376
Query 1377 TAATTAA--TTTACAAATGTAAT 1397
||||||| |||| |||| ||||
Sbjct 1377 TAATTAAAATTTA-AAAT-TAAT 1397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55192765005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5