BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43820.1
Length=1641
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494624 jgi|Araly1|494624|fgenesh2_kg.8__440__AT5G43820.1 2061 0.0
> Ahg494624 jgi|Araly1|494624|fgenesh2_kg.8__440__AT5G43820.1
Length=2028
Score = 2061 bits (1116), Expect = 0.0
Identities = 1405/1540 (91%), Gaps = 37/1540 (2%)
Strand=Plus/Plus
Query 1 ATGCTTAGGAGATGGAACATAGTTATTGAATCGCTACGTCGCGTTCATAGCAGTGATTTA 60
||||||| ||||||||||||||||| ||||| || |||||||||| | | |||||| ||
Sbjct 1 ATGCTTAAGAGATGGAACATAGTTAAGGAATCACTGCGTCGCGTTCTTCGTAGTGATGTA 60
Query 61 GAAAACCTAATTTCGGCTTCCCTA-TACAATCGAACACTTTGCACAGCCTCAGAATCATT 119
|||| ||||||||||| | | || | |||||| || |||||||||| |||||||||||
Sbjct 61 GAAACCCTAATTTCGGGTGCGTTACT-CAATCGCACTGTTTGCACAGCTTCAGAATCATT 119
Query 120 GAATCATGGTGTTGTTGATGAGAGTTATGTTCTAGCTGAATTATCTTCATTGCTTCCAAT 179
| | | | ||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 120 G--T-A------TCTTGATGAGAGTTATGTTCTGGCTGAACTATCTTCATTGCTTCCAA- 169
Query 180 TTCATCTAATAAAACCTCAGT-GTCAAAGGAAGAC-A--GTAGCTCAAAGAATCAAGTAG 235
|| || || ||||| | || ||||||||| | |||||||| ||||||||||
Sbjct 170 TT--TC--AT----CCTCATTGGT-GAAGGAAGACAATTATAGCTCAAGGAATCAAGTAT 220
Query 236 CTATTGATTCGTTTTTGTCAG-CAGAGGACAAACTTAGAGGTGTGTTTCTTCAGAAATTG 294
||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||
Sbjct 221 CTATTGATTCGTTTTTGTC-GCCAGAGGAGAAACTTAGAGGTGTGTTTCTTCAGAAATTG 279
Query 295 AAAGGCAAGTCTGCTATTCAGAAGAGTTTGAGTAGTCTTGGTATTGGTTTGAGTATTGAC 354
||||| || ||||| || ||||| ||||| |||||||||||||| |||||||||||||
Sbjct 280 AAAGGGAAATCTGCGATACAGAATTGTTTGTCTAGTCTTGGTATTGATTTGAGTATTGAC 339
Query 355 ATTGTTG-CCGATGTATTGAATCGAGGGAATTTAAGCGGCGAAGCGATGGTAACGTTCTT 413
|||| || ||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 340 ATTG-TGTCCGATGTTTTGAATCGAGGGAATTTAAGCGGTGAAGCGATGGTTACGTTTTT 398
Query 414 TGATTGGGCGGTTCGTGAGCCTGGTGTGACTAAAGATGTTGGTAGCTACAGTGTGATTTT 473
| |||||||| |||||||||||||||||| ||||||||||| |||||| |||||||| |
Sbjct 399 TAATTGGGCGATTCGTGAGCCTGGTGTGAGTAAAGATGTTGATAGCTATTGTGTGATTCT 458
Query 474 AAGAGCGTTAGGAAGGAGAAAGCTTTTCTCTTTTATGATGGATGTTCTAAAGGGAATGGT 533
|||||||||||||||||| ||| ||||||||||||||||||||||| || |||||||||
Sbjct 459 AAGAGCGTTAGGAAGGAGGAAGTTTTTCTCTTTTATGATGGATGTTTTACGGGGAATGGT 518
Query 534 ATGTGAAGGTGTTAATCCTGATCTG-GAGTGTTTAACT-ATTGCTATGGATAGCTTTGTT 591
|||||||| ||||||||| ||||| | |||||||| | |||||||||||||||||||||
Sbjct 519 GTGTGAAGGGGTTAATCCTAATCTGCG-GTGTTTAA-TCATTGCTATGGATAGCTTTGTT 576
Query 592 AGGGTTCATTATGTGCGTAGAGCGATAGAGTTGTTTGAGGAAAGTGAAAGTTTTGGGGTG 651
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 577 AGGGTTCATTATGTGCGTAGAGCGATAGAGTTGTTTGAGGAAAGTGAAAGTTATGGGGTG 636
Query 652 AAATGTAGTACTGAGTCTTTCAATGCATTGTTACGGTGTCTATGTGAGCGTTCACATGTG 711
|||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||
Sbjct 637 AAATGTAGTACTGAGTCTTTCAATGCATTGTTGCGGTGTCTCTGCGAGCGTTCGCATGTG 696
Query 712 AGTGCTGCAAAGTCAGTATTTAATGCTAAGAAAGGTAATATACCTTTTGATAGTTGTAGT 771
|||||||| || || || |||||||| ||||||||||| ||||| ||||| |||||||||
Sbjct 697 AGTGCTGCTAACTCGGTGTTTAATGCAAAGAAAGGTAAAATACCATTTGACAGTTGTAGT 756
Query 772 TATAACATTATGATTAGTGGGTGGTCAAAGCTCGGTGAGGTTGAA-GAGATGGAAAAGGT 830
|||||||||||||||||||||||||| |||||||||||| ||||| || |||||||||||
Sbjct 757 TATAACATTATGATTAGTGGGTGGTCGAAGCTCGGTGAGATTGAAGGA-ATGGAAAAGGT 815
Query 831 TTTGAAGGAGATGGTGGAGAGTGGATTTGGTCCTGACTGTTTGTCTTATAGCCATCTTAT 890
||||||||||||||||||| ||||| | |||||||||||||||||||| ||||| |||||
Sbjct 816 TTTGAAGGAGATGGTGGAGGGTGGAATCGGTCCTGACTGTTTGTCTTACAGCCACCTTAT 875
Query 891 TGAAGGGTTGGGAAGAACTGGTCGTATCAATGATTCTGTTGAGATCTTTGATAATATAAA 950
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 876 TGAAGGGTTGGGAAGAGCTGGTCGTATCAATGATTTTGTTGAGATCTTTGATAATATAAA 935
Query 951 ACACAAGGGTAATGTTCCTGATGCAAATGTTTACAATGCTATGATCTGTAATTTCATATC 1010
||||||||||| |||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 936 ACACAAGGGTAGTGTTCCAGACGCAAATGTTTACAACGCTATGATCTGTAATTTCATATC 995
Query 1011 TGCTCGAGATTTTGATGAGTCTATGAGGTACTACCGAAGGATGCTGGATGAGGAATGTGA 1070
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 996 TGCTCGAGATTTTGATGAATCTATGAGGTACTACCGAAGGATGCTGGATGAGGAATGTGA 1055
Query 1071 ACCTAACTTGGAAACCTATTCCAAGCTTGTTTCTGGGCTCATTAAAGGCCGTAAGGTTTC 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 ACCTAACTTGGAAACCTATTCCAAGCTTGTTTCTGGGCTCATTAAAGGCCGTAAGGTTTC 1115
Query 1131 TGATGCGCTTGAGATATTCGAAGAGATGTTATCAAGAGGGGTTCTTCCCACCACAGGGCT 1190
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||
Sbjct 1116 TGATGCGCTTGAGATATTCGAAGAGATGTTGTCAAGAGGGATTCTTCCCACCACAGGACT 1175
Query 1191 TGTTACCTCTTTCCTCAAGCCTCTTTGCAGCTATGGTCCACCACACGCTGCAATGGTTAT 1250
||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct 1176 CATTACCTCTTTCCTCAAGCCGCTTTGCAGCTACGGTCCACCACATGCAGCAATGGTTAT 1235
Query 1251 CTATCAGAAATCAAGAAAAGCCGGGTGTAGGATATCAGAAAGCGCATATAAGCTGTTGCT 1310
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 TTATCAGAAATCAAGAAAAGCCGGGTGTAGGATATCAGAAAGCGCATATAAGCTGTTGCT 1295
Query 1311 TAAGCGGCTATCAAGATTTGGAAAATGCGGGATGCTGTTGAACGTATGGGATGAAATGCA 1370
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1296 TAAGCGGCTATCAAGATTTGGAAAATGTGGGATGCTGTTGAACGTGTGGGATGAAATGCA 1355
Query 1371 AGAGTCTGGATATCCTTCTGACGTGGAAGTCTACGAGTATATTGTGGATGGGCTCTGTAT 1430
||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1356 AGAGTGTGGATATCCTTCTGACGTGGAAGTGTACGAGTATATTGTCGATGGGCTCTGTAT 1415
Query 1431 CATTGGGCATCTAGAGAATGCTGTGCTTGTGATGGAAGAAGCTATGCGTAAAGGGTTTTG 1490
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1416 CATTGGGCATCTAGAGAATGCTGTGCTTGTGATGGAAGAAGCCATGCGTAAAGGGTTTTG 1475
Query 1491 CCCAAACCGCTTTGTTTATAGTAGGCTTAGCAGTAAATTA 1530
|||||||||||||||||||||||||||||||| ||| |||
Sbjct 1476 CCCAAACCGCTTTGTTTATAGTAGGCTTAGCA-TAA-TTA 1513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61515745675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5