BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43830.1
Length=1103
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494623 jgi|Araly1|494623|fgenesh2_kg.8__439__AT5G43830.1 1563 0.0
> Ahg494623 jgi|Araly1|494623|fgenesh2_kg.8__439__AT5G43830.1
Length=1075
Score = 1563 bits (846), Expect = 0.0
Identities = 1002/1073 (93%), Gaps = 27/1073 (3%)
Strand=Plus/Plus
Query 37 ttttttcttctttctgcaaa-ttttattttcCCGAGAAAATCATCACTGAG--AAAAATG 93
|||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||
Sbjct 22 TTTTTTCTTCTTTCTGCAAATTTTTATTTTCCCG-GAAAATCATCACTGAGAAAAAAATG 80
Query 94 CTCGCTGTGTTTGAGAAGACGGTGGCGAATAGCCCTGAAGCTTTACAGAGTCCACACTCG 153
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 81 CTCGCTGTGTTTGAGAAGACGGTGGCGAATAGCCCTGAAGCTTTGCAAAGTCCACACTCG 140
Query 154 TCTGAGTCTGCTTTCGCGTTGAAAGATGGATCTCTCGCTACTCATTTCGCTTCCGTGAAT 213
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 141 TCTGAGTCTGCTTTCGCTTTGAAAGATGGATCTCTCGCGACTCATTTCGCTTCCGTGAAT 200
Query 214 CCCAACTCCGTCACGCTTAACTTCGGATCTTCTGGATTTGTTGCTTACTCTCTTGATAAT 273
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 CCTAACTCCGTCACGCTTAACTTCGGATCTTCTGGATTTGTTGCTTACTCTCTTGATAAT 260
Query 274 CCTGATCCTCGTGTTCCTAGATTATTTGCTGTGGTGGATGATATTTTCTGTCTCTTCCAA 333
| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 261 CATGATCCTCGTGTTCCTAGATTATTTGCGGTGGTGGATGACATTTTCTGTCTCTTCCAA 320
Query 334 GGACACATTGAGAACCTACCGTTTCTGAAGCAGCAGTATGGACTGAACAAAATCACAAAC 393
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 321 GGACACATTGAGAACCTAACGTTTCTGAAGCAGCAGTATGGGCTGAACAAAATCACAAAC 380
Query 394 GAGGCCATCATTGTGATTGAGGCTTACAGGACACTACGTGATCGAGGTCCTTACCCTGTG 453
||||| |||||||||||||||||||||||||| | |||||||||||||| |||||||||
Sbjct 381 GAGGCTATCATTGTGATTGAGGCTTACAGGACGTTGCGTGATCGAGGTCCCTACCCTGTG 440
Query 454 GACAAAGTTGTTAGAGATTTCCATGGAAAGTTTGCGTTTATACTCTTCGATAGCGTCAAG 513
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 441 GACAAAGTTGTCAGAGATTTCCATGGAAAGTTTGCGTTTATCCTCTTCGATAGCGCCAAG 500
Query 514 AAAACTGTCTTTGCTGCTGCTGACGCCGATGGGAGTGTGCCGTTCTTCTGGGGAACCGAT 573
||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 501 AAAACCGTCTTCGCTGCTGCTGACGCAGATGGAAGTGTGCCGTTCTTCTGGGGAACCGAT 560
Query 574 GCTGAAGGGCACCTTGTGT-TTTCTGATAACACCGAGATGGTGAAGAAAGGTTGCGCCAA 632
||||||||||| ||||| | ||||||||||||| |||||| |||||||||||||||||||
Sbjct 561 GCTGAAGGGCATCTTGT-TCTTTCTGATAACACTGAGATGATGAAGAAAGGTTGCGCCAA 619
Query 633 ATCTTATGGTCCTTTCCCTAAAGGTTGTTTCTTTACGTCGTCGGGTGGATTGAGGAGCTT 692
||||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||||
Sbjct 620 ATCTTATGGTCCTTTCCCTAAAGGTTGCTTCTTTACATCATCGGGAGGATTGAGGAGCTT 679
Query 693 TGAGCACCCAAAGAACGAGTTGAAGCCAGTGCCGAGAGTGGACAGCTCAGGTGACGTGTG 752
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 680 CGAGCACCCAAAGAACGAGTTGAAGCCAGTGCCGAGAGTGGACAGCTCGGGAGACGTGTG 739
Query 753 TGGTGCAACCTTCAAGGTTGACGCTGAGACTAAGAGAGAGGGTACCAAAATGCCTAGAGT 812
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 TGGTGCAACTTTCAAGGTTGACGCTGAGACTAAGAGAGAGGGTACCAAAATGCCTAGAGT 799
Query 813 CGATAGCTCCCAAAATTGGGCCGGTCATATCTAAACCGGAAATCATACACAAA-TCACAA 871
||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||
Sbjct 800 CGATAGCTCCCAAAATTGGGCCGGTCATATCTAAACCGGAA-TCATACAAAAAATCACAA 858
Query 872 GCTCAGCATCTTCTCCCTCTTGTCTTGTCCCCTCTCTTTCGTTACATGTTT-GAGTTACA 930
|||| || ||||| | |||||||||| ||||||| || |||||||||||| ||||||||
Sbjct 859 GCTCTGCTTCTTC-C--TCTTGTCTTGACCCCTCT-TT-CGTTACATGTTTTGAGTTACA 913
Query 931 TTGAGAAAATAATTTCAAACCACAATGTTCTAAACGCGTTTATGTACATGTTTGAGGTGG 990
|||||| |||| || || ||||||||||||| || ||||||||||||||||||||||
Sbjct 914 TTGAGACAATA-TT-CACACCACAATGTTCT---CG--TTTATGTACATGTTTGAGGTGG 966
Query 991 GATTTGGAAAGGATGTC-GAGTTTTGTGAAACTTTGGAATTACGAGACTACTAGACTTTT 1049
||||||||||||||||| ||||||||||||||||||||| | ||||||| |||||||
Sbjct 967 GATTTGGAAAGGATGTCAGAGTTTTGTGAAACTTTGGAACCATGAGACTA---GACTTTT 1023
Query 1050 GTTTCTCTGTTTACGTTTCTTAAATCAAT-AAATAAATAAGTTTTTATTTCAT 1101
|||||||||||| |||||||||||| ||| |||||||||||||||| ||||||
Sbjct 1024 GTTTCTCTGTTTGCGTTTCTTAAAT-AATTAAATAAATAAGTTTTTGTTTCAT 1075
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41096504526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5