BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43840.1
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg356702 jgi|Araly1|356702|fgenesh1_pg.C_scaffold_8000489 1192 0.0
> Ahg356702 jgi|Araly1|356702|fgenesh1_pg.C_scaffold_8000489
Length=867
Score = 1192 bits (645), Expect = 0.0
Identities = 804/875 (92%), Gaps = 34/875 (4%)
Strand=Plus/Plus
Query 1 ATGGATTATAACCTTCCAATTCCATTAGAGGGTCTCAAAGAAAC-GCCACCAACGGCTTT 59
||||| |||||||||||| ||||||||||||||||||||||||| | |||| | |||||
Sbjct 1 ATGGAATATAACCTTCCACTTCCATTAGAGGGTCTCAAAGAAACAG-GACCAGCTGCTTT 59
Query 60 CTTGACGAAAACATACAACATAGTGGAGGATTCAAGCACAAACAACATAGTTTCATGGAG 119
|||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 60 CTTGACGAAAACCTACAACATAGTTGAGGATTCATGCACAAACAACATAGTTTCATGGAG 119
Query 120 CAGAGACAACAACAGCTTCATTGTTTGGGAACCAGAGACTTTTGCCCTAATTTGCCTCCC 179
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 120 CAGAGACAACAACAGCTTCATTGTCTGGGAACCAGAGACTTTTGCCCTAATTTGTCTCCC 179
Query 180 TAGATGCTTTAAGCACAATAATTTCTCCAGCTTTGTTAGACAGCTCAATACTTATGGGTT 239
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 TAGATGCTTTAAGCACAACAATTTCTCCAGCTTTGTTAGACAACTCAATACTTATGGGTT 239
Query 240 TAAGAAGATTGATACAGAGAGATGGGAATTTGCAAATGAGCATTTTCTGAAGGGAGAGAG 299
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||
Sbjct 240 TAAGAAGATTGATACAGAGAGATGGGAGTTTGCAAATGAGTATTTTCTGAAGGGAGAAAG 299
Query 300 GCATCTTCTTAAGAACATCAAGAGAAGAAAGACATCATCTCAAACGCAAACGCAGT--C- 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 300 ACATCTTCTTAAGAACATCAAGAGAAGAAAGACATCATCTCAAACGCAAACGCAGTCGCT 359
Query 357 -----GC--------T--A---GAAGGAGAGATCCATGAGCTGCGAAGAGACAGAATGGC 398
|| | | ||||||||||||||||||||| ||||||||||| ||||
Sbjct 360 AGAAGGCGATAGAGTTCGACTGGAAGGAGAGATCCATGAGCTGAGAAGAGACAGAGTGGC 419
Query 399 TTTAGAAGTAGAACTGGTTAGACTGCGACGAAAACAAGAAAGCGTGAAGACATATCTGCA 458
||||||| ||||||| || |||||| ||||||||||||||||||||||||| ||||||||
Sbjct 420 TTTAGAATTAGAACTAGTGAGACTGAGACGAAAACAAGAAAGCGTGAAGACGTATCTGCA 479
Query 459 TTTGATGGAAGAGAAACTGAAAGTCACAGAAGTAAAGCAAGAAATGATGATGAATTTCTT 518
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 TTTGATGGAAGAGAAACTGAAAGTCACAGAAGTGAAGCAAGAAATGATGATGAATTTCTT 539
Query 519 GCTAAAGAAGATTAAGAAACCGAGTTTTTTACAGAGCTTAAGGAAACGTAATCTGCAAGG 578
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 540 GCTAAAGAAGATTAAGAAACCGAGTTTTTTGCAGAGCTTAAGGAAACGTAAGCTGCAAGG 599
Query 579 AATCAAGAATCGAGAGCAAA-AGCAAGAGGTGATCTCAAGCCATGGTGTTGAGGATAATG 637
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||
Sbjct 600 AATCAAGAATCGAGAGCAAAGA-CAAGAGGTGATCTCAAGCCATGGTGTTGAGGATCATG 658
Query 638 GAAA-GTTTGTTAAAGCTGAGCCAGAAGAGTATGGTGATGACATCGATGATCAATGTGGA 696
| | |||||||||||||||||| |||||||||||||||||||||| |||||||| ||||
Sbjct 659 -ATACGTTTGTTAAAGCTGAGCCGGAAGAGTATGGTGATGACATCGGTGATCAATTTGGA 717
Query 697 GGTGTGTTT-GATTATGGTGATGAGCTTCACATAGCTTCAATGGAGCATCAAGGACAAGG 755
||||| ||| | |||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 718 GGTGTTTTTAG-TTATGGCGATGAGCTTCACATAGCTTCAATGGAGGATCAAGGACAAGA 776
Query 756 -GGAGGATGAAATTGAAATGGATAGTGAAGGAATTTGGAAGGGTTTCGTGTTGAGTGAGG 814
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AGGAGG-TGAAATGGAAATGGATAGTGAAGGAATTTGGAAGGGTTTCGTGTTGAGTGAGG 835
Query 815 AGGAGATGTGTGATTTAGTGGAACATTTTATATAA 849
|| | |||||||||||| ||||||||||||||||
Sbjct 836 AG-A--TGTGTGATTTAGGGGAACATTTTATATAA 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31413283608
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5