BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43880.1
Length=2879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494617 jgi|Araly1|494617|fgenesh2_kg.8__433__AT5G43880.1 3997 0.0
> Ahg494617 jgi|Araly1|494617|fgenesh2_kg.8__433__AT5G43880.1
Length=2869
Score = 3997 bits (2164), Expect = 0.0
Identities = 2673/2908 (92%), Gaps = 77/2908 (3%)
Strand=Plus/Plus
Query 1 TCGGTGTTGTCACCATAATCTTCTTCTTGACTCTATA-TCGAAAAAAGCTTCCAACTTTA 59
|||||| |||||||||||||||||||| ||||||||| || |||||||||||| |||||
Sbjct 1 TCGGTGATGTCACCATAATCTTCTTCTCGACTCTATAGCCG-AAAAAGCTTCCACCTTTA 59
Query 60 TCTCGTTAACCGAAACTCCGGCGACAAAGCTTCTACCTTTATGTTCTAAAAT-CGAAACT 118
|| | |||| |||||||||||||| ||||||||||| |||| | |||||| | |||||||
Sbjct 60 TCACCTTAATCGAAACTCCGGCGATAAAGCTTCTACATTTAAGGTCTAAATTCCGAAACT 119
Query 119 CCGGCGATAAAGCTTCTA-TTTTAATTTG--TAAATTGAACTTCCGGCTGAATTTTAACC 175
||||||| |||||||||| ||| | ||| |||||||||| |||||| |||||| ||||
Sbjct 120 CCGGCGAGAAAGCTTCTACCTTT-A-TTGCTTAAATTGAACCTCCGGCGGAATTTCAACC 177
Query 176 GGAGTATGTAGATTCCGGCACACAGGCTTTGAAGAAATGAATAAGCAACGAAGAAGAAAC 235
|||| ||| ||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 178 GGAGAATGCAGATTCCGGCAGACAGGCGGTGAAGAAATGAATAAGCAACGAAGAAGAAAC 237
Query 236 GTTCAGGCTCATGGATGTTT-GGCTCGGATGGTGAATCTGTTTGATTTTGGAACTGTTGG 294
|||||||||||||||||||| || ||||||||| |||||||| ||||||||||| |||||
Sbjct 238 GTTCAGGCTCATGGATGTTTAGG-TCGGATGGTTAATCTGTTCGATTTTGGAACAGTTGG 296
Query 295 TAATGGAAAGAAACTGCTCACTGAGAAACCCCATTTTGATCATGGGTCTATCAAGGGGAA 354
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 297 TAATGGAAAGAAGTTGCTCACTGAGAAACCCTATTTTGATCATGGGTCTATCAAGAGGAA 356
Query 355 TCAATTTGATCAGATAGAAGATAAAGTTGATGTGAGGAATGGTGGAGTCAATGGAACACC 414
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TCAGTTTGATCATATAGAAGATAAAGTTGATGTGAGGAATGGTGGAGTCAATGGAACACC 416
Query 415 AATGAAGATGCTTTTAGAACAGGAAATGTCGAAAGAAATGGAAGTTAAGCTAAGTTCGAC 474
||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||
Sbjct 417 GATGAAGATGCTTTTAGAACAGGAAATGTCGAAAGAGATGGAATTTAAGCTCAGTTCGAC 476
Query 475 AAATTTGGTTGCTAAGTTGATGGGTCTTGATTCGTTTCCTCAGACACAATCTGCTCCTAG 534
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 477 AAATTTGGTTGCTAAGTTAATGGGTCTTGATTCGTTTCCTCAGACACAATCTGCTCCAAG 536
Query 535 GAGTTATAGTTCAAAGCCTCGTCTAAAGAGGTCGTTAAGTCACGGGGAATATAAAAATGT 594
|||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct 537 GAGTAATAGTTCAAAGCCTCGTCTAAAGAGGTCGTTGAGTCATGGGGAGGATAAAGATGT 596
Query 595 CTATGAGATATGGCAGAAAGAGGGGGAACTAAGTAGTAATGGTGTGGAGGGATTAAGCAA 654
||||||||| ||||||||| ||||| | |||||||||||||||||||| ||||||||
Sbjct 597 CTATGAGATTTGGCAGAAACCTGGGGAGTTGAGTAGTAATGGTGTGGAGGGTTTAAGCAA 656
Query 655 GAAGAAGATGGACATTGTCCGTGAAAAGTTCTTGGAAGCGAAGCGTTTGGTTACAGACGA 714
|||||||||||||||||| || ||||||||||||| ||||| |||||||||||||||||
Sbjct 657 GAAGAAGATGGACATTGTACGCCAAAAGTTCTTGGAGGCGAAACGTTTGGTTACAGACGA 716
Query 715 TGAACTTCGACATTCTAAGGAGTTTCAAGAAGCTATGGAAGTTTTGAGTTCGAATAAGGA 774
| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 717 TAAACTTCGACATTCTAAAGAGTTTCAAGAAGCTATGGAAGTTTTGAGTTCGAACAAGGA 776
Query 775 GTTGTTCCTCGAGTTTTTGCAGGAGTCGAATAACTTCTTCTCTCATCATCTCCACAGTTT 834
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 777 GTTGTTCCTCGAGTTTTTGCAGGAATCGAATAACTTCTTCTCTCATCATCTCCACAGTTT 836
Query 835 CCAGTCCACAGATCCACCAACCTCAGAGAAGTCTAAGCGGATCACTATTTTGAAGCCTTC 894
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CCAGTCTACAGATGCACCAACCTCAGAGAAGTCTAAGCGGATCACTATTTTGAAGCCTTC 896
Query 895 AAAGACCGTTGCTGATGAAAAGTTTGGAAATGAACCAGCCATTGAATCTTCG-AGAGACG 953
||||||| | ||||| | | | | | ||||||||||||||||| || ||||
Sbjct 897 AAAGACC-AT--TGATG----G--T-G--A-G--GCAGCCATTGAATCTTCGAAG-GACG 940
Query 954 GAAGTAAGAGTGGCAAGGGTCTTGATTTTTTCAAATGGCCGGTTGAAGAAGAATATCCGA 1013
||| ||||||||| || ||||||||||| ||||||||||| ||| |||||||||||||||
Sbjct 941 GAATTAAGAGTGGTAAAGGTCTTGATTTGTTCAAATGGCCTGTTAAAGAAGAATATCCGA 1000
Query 1014 CAAAGCAATCAACTCGAATAGTTGTTCTGAAACCTAACGGTCAAGTCACAAAGGCTTCAT 1073
||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 1001 CAAAGCAATCAACTCGAATAGTTGTTCTGAAACCTAATGGCCATGTCACAAAGGCTTCAT 1060
Query 1074 CATGTCCAACCTCTCCAAGAGGTTTTGAGGGGAGAGAGTCAAGAGATGTGGCTAGGAGAG 1133
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1061 CATGTCCAACCTCTCCAAGAGGTTCTGAGGAGAGAGAGTCAAGAGATGTGGCTAGGAGAG 1120
Query 1134 TGAAGAGCCAGATACTTAAGGAAGAAACTTTACAATCTTCTGTCTTTTCCAACGGCTATA 1193
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1121 TGAAGAGCCAGATACTTAAGGAAGAAACTTTACAATCTTCTGGCTTCTCCAACGGCTATA 1180
Query 1194 TATGCGATGATAGTTCTCTTAACGACTACGCAGATTCTGAAATCATGTCACCGGTTTCTA 1253
|| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1181 TAGGCGATGATAGTTCTCTTAATGACTATGCAGATTCTGAAATCATGTCACCGGTTTCTA 1240
Query 1254 GGCATTCATGGGATTATATAAACAAGTATGATAGCCCTTTTTCTTCTTCGCCTTTTAGCA 1313
||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 1241 GGCATTCATGGGATTATATTAACAAGTACGATAGCCCTTTTTCTTCTTCGCCCTTTAGCA 1300
Query 1314 GAGCCTCGGGTTCTCCAGAGTCATCATCTGTCTGCAGAGAGGCCAAGAAACGGCTTTCTG 1373
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1301 GAGCCTCGGGTTCTCCGGAGTCATCATCCGTCTGCAGAGAGGCCAAGAAACGGCTTTCTG 1360
Query 1374 AAAGATGGGCATTGATGGCAGCAGCCAATGAGAATTTGCAGGAGGCCAAAGTTATTGAAA 1433
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||
Sbjct 1361 AAAGATGGGCATTGATGGCAGCAGCCAATGAGAATTTGCAGGAGACCAATGTTATCGAAA 1420
Query 1434 AGAAAGGCTCTAATATTTCCTTAGGTGATATGCTTGCACTTCCAGATTTAAGAGAAGATC 1493
||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1421 AGAAAGGCTCTAATAGTACCTTAGGTGATATGCTTGCACTTCCAGATTTAAAAGACGATC 1480
Query 1494 TTATAACTGAAGAAGAAGAAACAAGCAATGGTAATGAACAGGAGGGTCCTAAAGTATCTG 1553
||| ||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1481 TTAGAACCGAAGAAGAAAAAACAAGCGATGGTAATGAACAGGAGGGTCCTAAAGTATCTG 1540
Query 1554 CATCTTGCTTTGATGGTAATTTCAGTAGAGAAGAAGGAAAGTTAAAGCCTCCTAAAGGCC 1613
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1541 CATCTTGCTTTGATGGTAATTTCAGTAGAGAAGAAGGAAAATTAAAGCCTCCTAAAAGCC 1600
Query 1614 TTACACGATCAAAATCTCTCCCTGAATCATCGACAAGTCTTGGTCACAAATCCCTAGATA 1673
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1601 TTACACGATCGAAATCTCTCCCTGAATCATCGACAAGTCTTGGTCACAAATCCCTTGATA 1660
Query 1674 GTTCCAACAAGAGTAAATCATCCAGAGTTCCAGAGGAGCTGACAAAGTCAAAGAGCTTGA 1733
|| |||| ||| | || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1661 GTACCAAGAAG-GGGAA--ATCCAAAGTTCCAGAGGAGCTGACAAAGTCAAAGAGCTTGA 1717
Query 1734 AATGGTCTCTGAAAGGTAAAGTCTCAAACTTTCTTTTCTCAAGGAGCAAGAAAGCCAGTA 1793
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1718 AATGGTCACTGAAAGGTAAAGTCTCAAACTTTCTTTTCTCAAGGAGCAAGAAAGCCAGTA 1777
Query 1794 AGGAGAGATCTTATGAGGAATCCC--CT-G---------AAATCTTGGATTCTCGGTGTA 1841
|||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 1778 AGGAGAGATCTTATGAGGAATCCCAAATGGTAAACCCCAAAATCTTGGATTCTCGGTGTA 1837
Query 1842 ACAATGAATATGATGCATCAGTGTCTGCCAGAATCATGACTTCTCGGGAGGGAGGCTTAT 1901
|| |||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||
Sbjct 1838 ACGATGAATATGATGCATCAGTGTCTGCCAGAAGCATGAATTCTCGGGAGGGAAGCTTAT 1897
Query 1902 CAATTACAAAGCCGACCATTTTCGGAAACTCTAGCGAGTGGCGCGATGAGCCTAGTCCCA 1961
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1898 CAATTGCAAAGCCGACCATTTTCGGAAACTCTAGCGAGTGGCGTGATGAGCCTAGTCCAA 1957
Query 1962 TTTCAGTCCTGGAAACTTCTTTTGATGAGGAGGATGGAATCTTTTTTAATTCCTCTATCT 2021
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1958 TTTCGGTCCTGGAAACTTCATTTGATGAGGATGATGGAATCTTTTTTAATTCCTCTATCT 2017
Query 2022 TGAATAGATCATCATCTTCTCTTGAACGGGAGATGAAATCCAACTTATTAGGAAAATCAC 2081
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2018 TGAATAGATCATCATCTTCTCTTGAACGGGAGATGAAATCCAACTTATTAGGAAAATCGC 2077
Query 2082 CTCCCATAGGGTCTATTGGTCGGACCTTATCATTCGATGACTCAACAGTAGCTCGGTGTT 2141
|||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 2078 CTCCGATAGGGTCCATTGGTCGAACCTTATCATTCGATGACTCAACAGTTGCTCGGTGCT 2137
Query 2142 ACTCATCTAAACGCTCTACTACTTCCGCAAGAGACGAGGAAGAAGACTTGCGCCTCCTTA 2201
|||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| |
Sbjct 2138 ACTCATCTAAACGCTCTACTGCTTCCACAAGAGACGAGGAAGAAGACTTGCGTCTCCTCA 2197
Query 2202 TCAACACACTCTTATCAGCAGCTGATCTCGATGCAATCTCGGACAATCTTTTGTCTAAAT 2261
|||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct 2198 TCAACACACTCTTATCAGCAGCTGATCTCGATTCAATCTCAGACAATCTTTTATCTAAAT 2257
Query 2262 GGCATTCCT-CAGAGAGCCCACTAGACCCATCTCTGAGAAACAGCTACGCAGACTCAACG 2320
||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2258 GGCATTC-TGCAGAGAGCCCACTAGACCCAACTCTGAGAAACAGCTACGCAGACTCAACG 2316
Query 2321 GAACAGAAAAGACTCGGATCAAACGTGAAGAATCTAGTGTTTGACCTCGTCAACACGCTG 2380
|||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 2317 GAACAGAAAAGACTCGGATCAAACGTTAAGAAGCTAGTGTTCGACCTCGTCAACACGCTA 2376
Query 2381 CTCTTGGAGCTAACACCGAGCTATCTTGGACCTCGTAGTAGTCCCATGATC-CTCTCTGG 2439
|||||||||||||||||||||||||| |||||||||||| ||| ||| | ||||||||
Sbjct 2377 CTCTTGGAGCTAACACCGAGCTATCTCGGACCTCGTAGT---CCCTTGA-CACTCTCTGG 2432
Query 2440 TAAGCCATTGGGGGTTTATGTGATAAACAGAATGCAAGAGTGTTTAACGGGTAACGGAAG 2499
|||||||||| ||||||||||||||| | |||||||| ||||||||||||||||||||
Sbjct 2433 TAAGCCATTGCAAGTTTATGTGATAAACCGGATGCAAGAATGTTTAACGGGTAACGGAAG 2492
Query 2500 AGTGGAAGATCGGTGGTGGGATGAAGACGGAGACTTGAGCAGTTTGGCGGTGAATAAAGT 2559
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2493 AGTGGAAGATCGGTGGTGGGATGAAGACGGAGACTTGAGCAGTTTGGCGGTGAACAAAGT 2552
Query 2560 GGTGAGGATTGAAGTAGCTGAGATTGGTTCACAGGAGAGTTTGAGATTGGAAATGGATTC 2619
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 2553 GGTGAGGATTGAAGTAGCAGAGATTGGTTCGCAGGAGAGTTTGAGATTGGAAATGGATTC 2612
Query 2620 CATGGGAGAGGAATTAGAATTGAAGTTGCTGGAGGAGTTAGTGGAGGAGGCTTTGATGGA 2679
||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 2613 CATGGGAGAGGAACTAGAGTTGAAATTGCTGGAGGAGTTAGTGGAGGAGGCTTTGATGGA 2672
Query 2680 TTTGTCAGAACAATCCAAATTATTCATTCCAAGTATTTGTTAATCATATG--T--ATATT 2735
|||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||
Sbjct 2673 TTTGTCAGAACAATCCAAATTATTTATTCCAAGTATTTGTTAATCATATGGATGTATATT 2732
Query 2736 ATATGGTTTTATTGTGTGTATAA-TAT--G---AATCTCG-TT-CT--CTATTTTGGTTT 2785
||||||||||||||||||||||| ||| | |||| | || || |||||||| |||
Sbjct 2733 ATATGGTTTTATTGTGTGTATAAATATCTGGTGAATCACACTTTCTTTCTATTTTGTTTT 2792
Query 2786 TCTTTTGGGGGTGACTGATAGTGGAAAGTAGTGTTTCATATAGCCTCAATGTTTATATAC 2845
| |||| ||| ||| ||||| |||||||||||||| |||||| | | | | |
Sbjct 2793 TTTTTTTGGG-TGAATGATAATGGAAAGTAGTGTTACATATA---T-A-T----A----C 2838
Query 2846 TAATGTCTCAAGAATCAAGATTGTTCCA 2873
||||||||||||||||||||||||||||
Sbjct 2839 TAATGTCTCAAGAATCAAGATTGTTCCA 2866
Score = 67.6 bits (36), Expect = 5e-10
Identities = 61/73 (84%), Gaps = 2/73 (3%)
Strand=Plus/Plus
Query 81 CGACAAAGCTTCTACCTTTATGTTCTAAAATCGAAACTCCGGCGATAAAGCTTCTAT-TT 139
||| |||||||| |||||||| || |||||||||||||||||||||||||||| ||
Sbjct 40 CGAAAAAGCTTCCACCTTTATCACCT-TAATCGAAACTCCGGCGATAAAGCTTCTACATT 98
Query 140 TAATTTGTAAATT 152
||| | ||||||
Sbjct 99 TAAGGTCTAAATT 111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108671468985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5