BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43890.1
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494616 jgi|Araly1|494616|fgenesh2_kg.8__432__AT5G43890.1 1953 0.0
Ahg311505 jgi|Araly1|311505|fgenesh1_pm.C_scaffold_1000285 976 0.0
Ahg901141 jgi|Araly1|901141|Al_scaffold_0004_1791 191 1e-47
Ahg942140 jgi|Araly1|942140|scaffold_602684.1 63.9 3e-09
> Ahg494616 jgi|Araly1|494616|fgenesh2_kg.8__432__AT5G43890.1
Length=1278
Score = 1953 bits (1057), Expect = 0.0
Identities = 1207/1280 (94%), Gaps = 7/1280 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAACATGTTTAGGCTCATGGGAAGTGAAGATTCCTCCGACAGAAGACGGTGCATT 60
|||||||||||||||||||| |||||||||||||||| ||| ||||||| ||||||||||
Sbjct 1 ATGGAGAACATGTTTAGGCTTATGGGAAGTGAAGATTTCTCGGACAGAAAACGGTGCATT 60
Query 61 TGGGTTAACGGTCCTGTAATCGTCGGAGCCGGGCCATCGGGGCTAGCCACGGCAGCCTGC 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 61 TGGGTTAACGGTCCGGTAATCGTCGGAGCCGGGCCATCGGGGCTAGCCACGGCGGCTTGC 120
Query 121 CTCCGCGAGGAAGGTGTTCCCTTTGTGGTATTGGAGAGAGCAGATTGCATAGCTTCACTA 180
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 CTCCGCGAGGAAGGCGTTCCCTTTGTTGTATTGGAGAGAGCAGATTGCATAGCTTCACTA 180
Query 181 TGGCAAAAACGAACTTACGATAGAATCAAACTTCATTTACCAAAGAAAGTTTGTCAATTA 240
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGGCAGAAACGAACTTATGATAGAATCAAACTTCATTTACCAAAGAAAGTTTGTCAATTA 240
Query 241 CCCAAAATGCCCTTCCCGGAAGACTACCCGGAATATCCAACAAAACGACAGTTCATCGAG 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 241 CCCAAAATGCCCTTCCCGGAAGACTACCCGGAATATCCAACAAAAGGACAGTTCATCGAG 300
Query 301 TACCTTGAGTCCTACGCAAACAAATTCGAAATTACTCCTCAGTTCAACGAGTGTGTCCAG 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 TACCTTGAGTCCTACGCAAACAAATTTGAAATTACTCCTCAGTTCAACGAGTGTGTCCAG 360
Query 361 TCTGCTCGATACGACGAGACAAGTGGTCTCTGGCGCATCAAGACAACATCTTC--CT-CT 417
|| |||||||||||||| || |||||||| ||||||||||||||||||||||| || ||
Sbjct 361 TCAGCTCGATACGACGAAACCAGTGGTCTATGGCGCATCAAGACAACATCTTCGTCTTCT 420
Query 418 TCCTCGGGGTCGGAGATGGAATATATCTGCCGGTGGTTAGTGGTGGCGACGGGAGAAAAC 477
||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 421 TCCTCGGTGTCGGAGATGGAATATATCTGCCGGTGGCTAGTGGTGGCGACTGGAGAAAAC 480
Query 478 GCGGAGAAAG-TTGTTCCAGAGATCGATGGGCTCACAACGGAGTTTGAA-GGCGAGGTGA 535
||||| |||| || ||||||||||||||||||||||||||||||| || || ||||||
Sbjct 481 GCGGA-AAAGGTTATTCCAGAGATCGATGGGCTCACAACGGAGTTC-AACGGTGAGGTGG 538
Query 536 TCCACTCGTGTGAGTACAAATCCGGCGAGAAATACAGAGGAAAGAGTGTTCTTGTCGTCG 595
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TCCACTCGTGTGAGTATAAGTCCGGCGAGAAATACAGAGGAAAGAGTGTTCTTGTCGTCG 598
Query 596 GATGTGGAAACTCCGGCATGGAAGTCTCTCTTGATCTCGCAAATCACAATGCTAATGCAT 655
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct 599 GATGTGGAAACTCCGGCATGGAAGTTTCTCTTGATCTTGCAAATCACAATGCTAATGCCT 658
Query 656 CCATGGTTGTTCGTAGCTCGGTTCATGTGTTACCAAGAGAGATTTTAGGCAAATCTAGTT 715
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 659 CCATGGTTGTTCGTAGCTCGGTTCATGTGTTACCAAGAGAGATTCTAGGCAAATCGAGTT 718
Query 716 TTGAAATCTCCATGATGTTGATGAAGTGGTTTCCTCTGTGGCTAGTAGACAAGATTCTAC 775
| |||||||| ||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 719 TCGAAATCTCGGTGATGTTGATGAAATGGTTTCCTCTATGGCTAGTAGACAAGATCCTAC 778
Query 776 TGATTCTTGCATGGCTGATTTTAGGAAATTTGACAAAGTATGGCCTAAAGAGGCCCACGA 835
||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||| ||
Sbjct 779 TGATTCTCGCATGGCTGATTTTGGGAAATTTGACAAAGTATGGGCTAAAGAGGCCCAAGA 838
Query 836 TGGGCCCAATGGAGCTCAAGATTGTTTCAGGTAAGACTCCAGTTCTAGACATCGGAGCTA 895
||||||||||||||||||||||||| ||||| |||||||||||||| || || ||||| |
Sbjct 839 TGGGCCCAATGGAGCTCAAGATTGTCTCAGGGAAGACTCCAGTTCTTGATATTGGAGCCA 898
Query 896 TGGAGAAAATCAAATCCGGTGAAGTAGAAATCGTCCCGGGAATTAAACGGTTCTCTCGTA 955
||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||
Sbjct 899 TGGAGAAAATCAAATCCGGCGAAGTAGAAATCGTTCCGGGAATTAAAAGGTTCTCTCGTA 958
Query 956 GTCACGTGGAGCTAGTAGACGGTCAGAGATTAGATCTCGATGCGGTGGTTCTGGCCACGG 1015
| |||||||||||||| || ||||||||||||||||| || || |||||||| |||||||
Sbjct 959 GCCACGTGGAGCTAGTCGATGGTCAGAGATTAGATCTTGACGCCGTGGTTCTCGCCACGG 1018
Query 1016 GTTACCGTAGCAACGTCCCATCATGGCTCCAAGAAAATGATCTGTTTTCGAAAAACGGGT 1075
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 1019 GTTACCGTAGCAACGTACCTTCATGGCTCCAAGAAAATGATCTGTTTTCGAAAAACGGAT 1078
Query 1076 TCCCGAAATCGCCGTTTCCAAACGCGTGGAAAGGGAAATCGGGACTTTACGCGGCTGGAT 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TCCCGAAATCGCCGTTTCCAAACGCGTGGAAAGGGAAATCGGGACTTTACGCGGCTGGAT 1138
Query 1136 TCACAAGGAAAGGATTGGCTGGAGCATCAGCAGACGCCGTTAACATCGCTCAAGATATTG 1195
||||||||||||||||||| |||||||||||||| ||||||||||||||| |||| ||||
Sbjct 1139 TCACAAGGAAAGGATTGGCCGGAGCATCAGCAGATGCCGTTAACATCGCTAAAGACATTG 1198
Query 1196 GAAACGTGTGGAGAGAAGAAACCAAACGACAGAAAATGAGAACACGAGTGGGTCACCGCA 1255
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1199 GAAACGTGTGGAGAGAAGAGACAAAACGACAGAAAATGAGAACACGAGTGGGTCACCGCA 1258
Query 1256 GATGCATTTCAGTTGCTTAG 1275
||||||||||||||||||||
Sbjct 1259 GATGCATTTCAGTTGCTTAG 1278
> Ahg311505 jgi|Araly1|311505|fgenesh1_pm.C_scaffold_1000285
Length=1266
Score = 976 bits (528), Expect = 0.0
Identities = 1047/1294 (81%), Gaps = 49/1294 (4%)
Strand=Plus/Plus
Query 1 ATGGAGAACATGTTTAGGCTCATGGGAAGTGAAG---ATTCCTCCGACAGAAGACGGTGC 57
||||| || |||||||| ||||||| |||||||| ||| ||| ||| | | || ||
Sbjct 1 ATGGAAAATATGTTTAGACTCATGGCAAGTGAAGAATATTTCTCAGACCG--G-CGATGT 57
Query 58 ATTTGGGTTAACGGTCCTGTAATCGTCGGAGCCGGGCCATCGGGGCTAGCCACGGCAGCC 117
||||||| |||||||| || ||||| ||||| || || || || |||| || || ||
Sbjct 58 GTTTGGGTCAACGGTCCGGTTATCGTAGGAGCTGGTCCGTCCGGTTTAGCTACAGCGGCT 117
Query 118 TGCCTCCGCGAGGAAGGTGTTCCC-TTTGTGGTATTGGAGAGAGCAGATTGCATAGCTTC 176
|| || || || |||| | |||| || || || | |||||| ||||||||||||||||
Sbjct 118 TGTCTACGTGATCAAGGAG-TCCCATTCGTTGTGGTCGAGAGATCAGATTGCATAGCTTC 176
Query 177 ACTATGGCAAAAACGAACTTACGATAGAATCAAACTTCATTTACCAAAGAAAGTT-TGTC 235
||| |||||||||||||| ||||| || | || ||||| || || |||||| || ||||
Sbjct 177 ACTTTGGCAAAAACGAACCTACGACAGGCTTAAGCTTCACTTGCCCAAGAAA-TTCTGTC 235
Query 236 AATTACCCAAAATGCCCTTCCCGGAAGACTACCCGGAATATCCAACAAAACGACAGTTCA 295
|||| || | ||||||||||||||| ||||||| ||||| ||||| |||||||||||||
Sbjct 236 AATTGCCGACAATGCCCTTCCCGGATCACTACCCTGAATACCCAACGAAACGACAGTTCA 295
Query 296 TCGAGTACCTTGAGTCCTACGCAAACAAATTCGAAATTACTCCTCAGTTCAACGAGTGTG 355
|||| ||||||||||| ||||||||| ||||| |||| || | ||||| | | |
Sbjct 296 TCGATTACCTTGAGTCATACGCAAACCGGTTCGAGATTAAACCGGAATTCAATAAAAGCG 355
Query 356 TCCAGTCTGCTCGATACGACGAGACAAGTGGTCTCTGGCGCATCAAGACAACATCTTCCT 415
|| |||||||||| | || || || || || || ||| | | || |||| |||
Sbjct 356 TCGAGTCTGCTCGGTTTGATGAAACCAGCGGGCTATGGAGGGT-TAG--AACA---ACCT 409
Query 416 CTTCCTCGGGGTCGGAGATGGAATATATCTGCCGGTGGTTAGTGGTGGCGACGGGAGAAA 475
| | ||| | ||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 410 C-AGC-CGGAG-AGGAGATGGAATATATTTGCCGGTGGTTGGTGGTGGCGACGGGAGAAA 466
Query 476 ACGCGGAGA-AAGTTGTTCCAGAGATCGATGGGCTCACA-ACGGAGTTTGAAGGCGAGGT 533
|||| || | ||||| || ||||| ||||||| | | ||||||||||| || || ||
Sbjct 467 ACGCCGA-ACGTGTTGTCCCGGAGATTAATGGGCTTA-AGACGGAGTTTGACGGAGAAGT 524
Query 534 GATCCACT-CGTGTGAGTACAAATCCGGCGAGAAATACAGAGGAAAGAGTGTTCTTGTCG 592
|| || | | |||||||| || |||||||| |||| |||||||||||| ||||||||||
Sbjct 525 AATTCA-TGCATGTGAGTATAAGTCCGGCGAAAAATTCAGAGGAAAGAGAGTTCTTGTCG 583
Query 593 TCGGATGTGGAAACTCCGGCATGGAAGTCTCTCTTGATCTCGCAAATCACAATGCTAATG 652
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
Sbjct 584 TCGGATGTGGAAACTCCGGCATGGAAGTCTCTCTTGATCTTGCTAATCACAATGCTA-T- 641
Query 653 CA-T-CCATGGTTGTTCGTAGCTCGGTTCATGTGTTACCAAGAGAGATTTTAGGCAAATC 710
|| | ||||||| ||| | |||||||||||||| ||||| || |||||| | || |||||
Sbjct 642 CACTTCCATGGTCGTTAGAAGCTCGGTTCATGTTTTACCGAGGGAGATTATGGGGAAATC 701
Query 711 TAGTTTTGAAATCTCCA-TGATGTTGATGAAGTGGTTTCCTCTGTGGCTAGTAGACAAGA 769
| |||| |||||| | ||||| ||||||||||| | ||||| ||||| |||||||||
Sbjct 702 AACATTTGGAATCTC-AGTGATGATGATGAAGTGGCTACCTCTATGGCTCGTAGACAAGC 760
Query 770 TTCTACTGATTCTTG-CATGGCT-GATTTTAGGAAATTTGA-CAAAGTATGGCCTAAAGA 826
|||| || || ||| | ||||| | || |||| | || | |||||||||| || ||||
Sbjct 761 TTCTGCTAAT-CTTATCGTGGCTTG-TTCTAGGGAGCTT-ATCAAAGTATGGGCTCAAGA 817
Query 827 GGCCC-ACGATGGGCCCAATGGAGCTCAAGATTGTTTCAGGTAAGACTCCAGTTCTAGAC 885
||||| || || ||||| ||||||||||| | | |||| ||||| || ||||| |||
Sbjct 818 GGCCCGAC-ATCGGCCCGATGGAGCTCAAAAGCATGACAGGGAAGACGCCGGTTCTTGAC 876
Query 886 ATCGGAGCTATGGAGAAAATCAAATCCGGTGAAGTAGAAATCGTCCCGGGAATTAAACGG 945
||||| ||| ||||||| || |||||||| || |||||||| || || | ||| |||| |
Sbjct 877 ATCGGTGCTCTGGAGAAGATAAAATCCGGCGACGTAGAAATTGTACCTGCAATCAAACAG 936
Query 946 TTCTCTCGT-AGTCACGTGGAGCTAGTAGACGGTCAGA-GATTAGATCTCGATGCGGTGG 1003
||||| ||| | ||||||||||||||||| ||||||| | | || | |||| || ||||
Sbjct 937 TTCTCGCGTCAC-CACGTGGAGCTAGTAGATGGTCAGAAGCT-AGGTATCGACGCCGTGG 994
Query 1004 TTCTGGCCACGGGTTACCGTAGCAACGTCCCATCATGGCTCCAAGAAAATGA-TCTGTTT 1062
|||| ||||| || || |||||||| ||||| || ||||| ||||||| ||| | | |||
Sbjct 995 TTCTCGCCACCGGCTATCGTAGCAATGTCCCTTCTTGGCTTCAAGAAAGTGAAT-TCTTT 1053
Query 1063 TCGAAAAACGGGTTCCCGAAATCGCCGTTTCCAAACGCGTGGAAAGGGAAATCGGGACTT 1122
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1054 TCGAAAAACGGGTTTCCGAAATCGCCGTTTCCAAACGCGTGGAAAGGGAAATCGGGA-TT 1112
Query 1123 -TACGCGGCTGGATTCACAAGGAAAGGATTGGCTGGAGCATCAGCAGACGCCGTTAACAT 1181
|||||||| |||||||| || |||||||||||||| ||||||| |||||||||||||||
Sbjct 1113 ATACGCGGCCGGATTCACGAGAAAAGGATTGGCTGGGGCATCAGTAGACGCCGTTAACAT 1172
Query 1182 CGCTCAAGATATTGGAAACGTGTGGAGAGAAGAAACCAAACGACAGAAAATGAGAACACG 1241
||||||||| |||||||| || ||||||||||| |||||||||||||| ||||||| |
Sbjct 1173 CGCTCAAGACATTGGAAATGTATGGAGAGAAGAGACCAAACGACAGAAGATGAGAAGAA- 1231
Query 1242 A-GTGGGTCACCGCAGATGCATTTCAGTTGCTTA 1274
| ||||||||||| |||||||| |||||||||||
Sbjct 1232 ATGTGGGTCACCGAAGATGCATCTCAGTTGCTTA 1265
> Ahg901141 jgi|Araly1|901141|Al_scaffold_0004_1791
Length=1296
Score = 191 bits (103), Expect = 1e-47
Identities = 488/669 (73%), Gaps = 45/669 (7%)
Strand=Plus/Plus
Query 55 TGCATTTGGGTTAACGGTCCTGTAATCGTCGGAGCCGGGCCATCGGGGCTAGC---CACG 111
||||| ||||| ||||| || || |||||||| || || ||||| || ||||| | ||
Sbjct 76 TGCATCTGGGTGAACGGGCCGGTCATCGTCGGTGCTGGCCCATCAGGCCTAGCTGTCGCG 135
Query 112 GCAG-CCTGCCTCCGCGAGGAAGGTGTTCCCTTTGTGGTATTGGAGAGAGC-AGATTGCA 169
|| | |||| ||| | ||| ||||| ||| | | | ||| |||| | | ||||
Sbjct 136 GCCGACCTG-AAACGCCAAGAA---GTTCCGTTTATAATCCTCGAGCGAGCTA-ACTGCA 190
Query 170 TAGCTTCACTATGGCAAAAAC-GAACTTACGATAGAATCAAACTTCATTTACCAAAGAAA 228
||||||| || |||| ||||| |||| || ||| | |||| |||||| | || ||| |
Sbjct 191 TAGCTTCTCTGTGGC-AAAACAGAACCTATGATCGTCTCAAGCTTCATCTCCCCAAGCGA 249
Query 229 GTT-TGTCAATTACCCAAAATGCCCTTCCCGGAAGACTACCCGGAATATCCAA-CAA-AA 285
|| |||||||||||||| | ||||| |||||||| | |||||| ||||||| ||| |
Sbjct 250 -TTCTGTCAATTACCCAATTTACCCTTTCCGGAAGATTTCCCGGAGTATCCAACCAAGTA 308
Query 286 CGACAGTTCATCGAGTACCTTGAGTCCTACGCAAACAAATTCGAAAT-TAC-TCCTCAGT 343
| ||||| || |||||||||||||| ||||||| | | || | || | | || |||
Sbjct 309 C--CAGTTTATTGAGTACCTTGAGTCGTACGCAACCCACTTTG--ATCTCCGCCCAAAGT 364
Query 344 TCAACGAGTGTGTCCAGTCTGCTCGATACGACGAGACAAGTGGTCTCTGGCGCATCAAGA 403
|||| ||| ||| ||||| ||| ||| ||| ||| ||| || ||||| || |||
Sbjct 365 TCAATGAGACTGTTCAGTCAGCTAAATATGACAAGAGGTTTGGGCTGTGGCGGGTCCAGA 424
Query 404 CAACATCTT------C-CTCTTCCTCGG-GGTCG-GAGATGGAATATATCTGCCGGTGGT 454
| | || | | | ||||| | | ||| | || ||||| ||| |||||
Sbjct 425 C--TGTTTTGAGAAGCGAGC-TGCTCGGTTATTGTGAGTTCGAGTATATTTGCAGGTGGC 481
Query 455 TAGTGGTGGCGACGGGAGAAAACGCGGAGAAAGTTGTTCCAGAGATCGATGGGCTCACAA 514
| ||||| ||||| |||||||| || |||||||| || || ||| | || ||| | | ||
Sbjct 482 TCGTGGTAGCGACCGGAGAAAATGCTGAGAAAGTGGTGCCGGAGTTTGA-GGGTTTAGAA 540
Query 515 CGGAGTTTGAAGGCGAGGTGATCCACTCG-T-GTGAGTACAAATCCGGCGAGAAATACAG 572
|| |||| || || || | || | | | |||| |||||||| || |||| ||| |
Sbjct 541 --GATTTTGGTGGTGATGTTCTTCA-T-GCTGGTGATTACAAATCTGGTGAGAGGTACCG 596
Query 573 AGGAAAGAGTGTTCTTGTCGTCGGATGTGGAAACTCCGGCATGGAAGTCTCTCTTGATCT 632
||||| | ||||| || ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 597 CGGAAACCGAGTTCTGGTAGTCGGATGTGGAAACTCCGGCATGGAAGTATCTCTCGATCT 656
Query 633 CGCAAATCACAATGCTAATGC--ATCCATGGTTGTTCGTAGCTCGGTTCATGTGTTACCA 690
|||| ||| |||| || || ||| ||||| ||||||||||| |||||||| |||||
Sbjct 657 ATCAAACCACGATGC-AA-GCCCATCAATGGTCGTTCGTAGCTCCGTTCATGTATTACCG 714
Query 691 AGAGAGATT 699
| |||||||
Sbjct 715 ATAGAGATT 723
> Ahg942140 jgi|Araly1|942140|scaffold_602684.1
Length=1294
Score = 63.9 bits (34), Expect = 3e-09
Identities = 50/57 (88%), Gaps = 3/57 (5%)
Strand=Plus/Plus
Query 583 GTTCTTGTCGTCGGATGTGGAAACTCCGGCATGGAAGTCTCTCTTG-ATCTC-GCAA 637
||||||||||||||||||||||||||||| ||||| || | | ||| ||||| ||||
Sbjct 618 GTTCTTGTCGTCGGATGTGGAAACTCCGGTATGGAGGTTTGT-TTGGATCTCTGCAA 673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47653646250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5