BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43910.2
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494614 jgi|Araly1|494614|fgenesh2_kg.8__430__AT5G43910.2 1842 0.0
> Ahg494614 jgi|Araly1|494614|fgenesh2_kg.8__430__AT5G43910.2
Length=1301
Score = 1842 bits (997), Expect = 0.0
Identities = 1119/1180 (95%), Gaps = 0/1180 (0%)
Strand=Plus/Plus
Query 106 CTCCCTCTCTCTGCCACTACGAATTTAGCACATAGCCGGAGCTCCGATCATGTCATCTTG 165
|||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 1 CTCCCTCTCTCTGCCACTTCGAATTTAACACATTCCCGGAGCTCCGATCATGTCATCTTG 60
Query 166 CTCCGACGAAGCGATTCCCGGCCAACCAATCGTCCTCGGTTGTGGTCAACTTTGTCTAGA 225
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 61 CTCCGACGACGCAATTCCCGGCCAACCAATCGTCCTTGGTTGTGGTCAACTTTGTCTGGA 120
Query 226 TTACTTAGTCACAGTGGCGTCTTTTCCAATTCCCGATCAAAAGATCCGAGGCACAAGCTT 285
||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||
Sbjct 121 TTACTTAGTCACAGTATCGTCTTTTCCAATTCCCGATCAAAAGATTCGAGGCACGAGCTT 180
Query 286 CAAGGTCCAAGGAGGTGGTAACACTGGGAATGCTTTAACATGTGTTGCTCGTTTGGGTTT 345
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 CAAGGTCCAAGGAGGTGGAAACACTGGGAATTCTTTAACATGTGTTGCTCGTTTGGGTTT 240
Query 346 GCCTTGTCGAATCTTGGCTAAGGTTGCTGATGATTCTCACGGGCGATATATGGTAGAAGA 405
||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 241 GCCTTCTCGAATCTTAGCTAAGGTTGCTGATGATTCTCACGGGCGTTATATGGTAGAGGA 300
Query 406 ACTCGAATCTAGCGGTGTGGATACTTCGTTTTGTATGAGTGCTAAAGATGGAGCTTCACA 465
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 301 ACTCGAATCTAGCGGTGTGGATACTTCGTTTTGTATGAATGCTAAAGACGGAGCTTCACA 360
Query 466 TTTTAATTACGTCATTGTAGATAACCAAACGAATACTCGTACTTGTATTTACACTCCAGG 525
||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 361 TTTTAATTACGCCATTGTAGATAACCAAACGAATACTCGAACGTGTATTTACACTCCAGG 420
Query 526 ATATCCTCCTTTGCTACCAGATGACCTTACTGAATCTCTACTTCTAGATGTTCTTGATGG 585
||||||||||||||| |||||||||||||| |||||||| ||| | ||||||||||||||
Sbjct 421 ATATCCTCCTTTGCTCCCAGATGACCTTACGGAATCTCTCCTTTTTGATGTTCTTGATGG 480
Query 586 AGTAAGAGTTCTATATGTAAATGGAAGGTCCCGTGAAGCCGAATTGCTTCTTGCGCAAAA 645
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 AGTAAGAGTTCTATATGTTAATGGAAGGTCCCGTGAAGCCGAATTGCTTCTTGCACAAAA 540
Query 646 GGCACATAGCAAGAATATACCAATCTTAATTAATGCAGAGaaaaaaaGGACAGGGCTAGA 705
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 GGCACATAGCAAGAATATATCAATCTTAATTAATGCAGAGAAAAAAAGGGCAGGGCTAGA 600
Query 706 TGAGCTCATTGACTTAGCTGATTATGCTATTTGTTCTACTAACTTCCCTCAGGAATGGAC 765
||||||| ||||||| ||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 601 TGAGCTCCTTGACTTGGCTGATTATGCTATTTGCTCTACTAACTTCCCTCAGCAATGGAC 660
Query 766 AGGGGCACCCTCATCTCCCAGTGCACTTCTCTCTATGCTCATAAGATTACCAAAGCTAAA 825
|| | |||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 661 AGAGTCACCATCTTCTCCCAGTGCACTTCTCTCTATGCTCATAAGATTACCGAAGCTAAA 720
Query 826 ATTTGTGATCATGACTTTGGGGGAACACGGTTGTGTGATGCTTGAGAGATGTTCCAGTGA 885
|||||||||| ||||||||||||||||||||||||||||||| || |||||||||| |||
Sbjct 721 ATTTGTGATCGTGACTTTGGGGGAACACGGTTGTGTGATGCTCGAAAGATGTTCCAATGA 780
Query 886 GGTTTCAGGGTCAGAAGAAGAGACAGACATAGATGAATTACACGAGTCTCTGAAACAAAG 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGTTTCAGGGTCAGAAGAAGAGACAGACATAGATGAATTACACGAGTCTCTGAAACAAAG 840
Query 946 CACAGACTTTACAAGTGTCTTACCGGTCTGCAATTCATCGCTAGTGACTAGACTGACAGG 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CACAGACTTTACAAGTGTCTTACCGGTCTGCAATTCATCGCTAGTGACTAGACTGACAGG 900
Query 1006 GAATGTTACAGGGAGATTGGTTATAGTAACAGCTGAGAAAATACCTTCATCGGAACTCAT 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 901 GAATGTTACAGGGAGATTGGTTATAGTAACAGCTGAGAAAATACCTTCATCGGAACTTAT 960
Query 1066 AGACACAACCGGTGCTGGAGATGCGTTTACCGGAGCTTTGCTTTATGGTTTGTGCACAGG 1125
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 961 AGACACAACTGGTGCTGGAGATGCGTTTACGGGAGCTTTGCTTTATGGTTTGTGCACAGA 1020
Query 1126 CATGGCTTTAGAGGAAATGTTGACATTTGCATCTCGAGTCGCTGCTTGCTGCTGCAGAGG 1185
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CATGGCTACAGAGGAAATGTTGACATTTGCATCTCGAGTCGCTGCTTGCTGCTGCAGAGG 1080
Query 1186 TTTAGGAGCTCGAACAAGTCTTCCATATCGTACTGATCCAAACCTTGCAACGTTCTTAGG 1245
||||||||||||||| | |||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1081 TTTAGGAGCTCGAACTACTCTTCCATTTCGTACTGATCCAAACCTTGCAACGTTCTTGGG 1140
Query 1246 GACATGACCGTAATTTTCTTTGTTTTCTTGACGTATAAAA 1285
| ||| |||||||||||| |||| ||||| |||| |||||
Sbjct 1141 GGCATAACCGTAATTTTCATTGTCTTCTTTACGTCTAAAA 1180
Score = 97.1 bits (52), Expect = 3e-19
Identities = 56/58 (97%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 1414 CGTTTGTGTGTGTGACACCGTCTTACTTTACGTGTACCATGTGAACAAAGTTCTAATG 1471
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1244 CGTTTGTGTGTGTGACACCGTCGTACTTTACGTGTACCATGTGAACAAAGTACTAATG 1301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55345125985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5