BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43920.1
Length=2515
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494611 jgi|Araly1|494611|fgenesh2_kg.8__427__AT5G43920.1 2745 0.0
> Ahg494611 jgi|Araly1|494611|fgenesh2_kg.8__427__AT5G43920.1
Length=2316
Score = 2745 bits (1486), Expect = 0.0
Identities = 1805/1950 (93%), Gaps = 58/1950 (3%)
Strand=Plus/Plus
Query 513 ATTTAGTGTTTGGG-AAATTATTT-A-ATTTAG-TGGTTATTTTCTGATTTAGTGATGA- 567
|||| || |||||| | | |||| | |||||| ||||| |||||||||| ||||| |
Sbjct 354 ATTTCGT-TTTGGGTGAGTGATTTGATATTTAGAGGGTTAATTTCTGATTTGGTGAT-AT 411
Query 568 TTTGAGAATTTTGTGTTGTTTA-TA-T-T-CTTGGTAGCGGGAAATTTGTACTTTCCTTT 623
||||||||||||| ||| |||| || | | ||||||||||||||||| ||| |||||||
Sbjct 412 TTTGAGAATTTTGGGTTCTTTATTATTATAATTGGTAGCGGGAAATTTATACGTTCCTTT 471
Query 624 GTGGACCTTTCAACTAT-TGAATGT-GGAAGATTTGCTGAGAATCTTAGAAAGTCATCAT 681
||||||||||||||| | ||||||| ||||||||| |||||||||||||||||||||||
Sbjct 472 GTGGACCTTTCAACT-TCTGAATGTGGGAAGATTT-TTGAGAATCTTAGAAAGTCATCAT 529
Query 682 CATCCATACGTAAGAGAACttttttttAGCTTGAGAGTGATTTTCAGATGGAGAATGGGT 741
||||| | | || | | ||||||| || ||||||||||||||||
Sbjct 530 CATCC-T---T------AC---------G--TAAGAGTGA-TTCCAGATGGAGAATGGGT 567
Query 742 TATGGGAGGTTTTAGGTTCAAAAGGGTTGTTGAAGAAACATGAATTCATTAGGATTTTGG 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 TATGGGAGGTTTTAGGTTCAAAAGGGTTGTTGAAGAAACATGAATTCATTAGGATTTTGG 627
Query 802 TTCAATGCTTATACTCGTTAGGATTCAAGAACTCTGCTTCTTGTCTGGAATTCGAGTCAA 861
|||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 628 TTCAATGCTTATACTCTTTAGGATTCAAGAACTCTGCTTCTTGTTTGGAAATCGAGTCGA 687
Query 862 AGATCTTGTATAAAACAGCTGATTCTGAGTTTCTTGAAAAGCAAGTTTTGAGTGG-GAAC 920
| |||| ||||||| | || |||| ||||| ||||||||||| |||||||||||| | |
Sbjct 688 ACATCTCGTATAAATCTGCGGATTATGAGTCTCTTGAAAAGCGAGTTTTGAGTGGTG-AT 746
Query 921 TGGGATAGTTGCGTA-CAGGTTCTAGACAGAATTTTTGATAATTCCATGGATGATACGAG 979
||||||||||||||| | ||| || ||||| ||||||||| |||||| ||||||||||||
Sbjct 747 TGGGATAGTTGCGTAGC-GGTCCTGGACAGGATTTTTGATCATTCCAAGGATGATACGAG 805
Query 980 GAACACGGCTTTATATCTAGTGTTCAAGCAATGTTTGTTGGAGTATTTGAAACGTGGGGA 1039
||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 806 AAACACGGCTGTATATTTAGTGTTTAAGCAATGTTTGTTGGAGTATTTGAAACGTGGGGA 865
Query 1040 TGTTTCTTTGGCCTTGAATGTGTTACGGAAGCAAGCTCCGTTGTTACGGATGGGAAAAGA 1099
|||||| |||||||||||||| || ||||||||||||||| ||||| ||||||| |||||
Sbjct 866 TGTTTCGTTGGCCTTGAATGTATTGCGGAAGCAAGCTCCGATGTTAAGGATGGGGAAAGA 925
Query 1100 GAAGATTCATAGGCTTGCTTGTGATATTGTTTATTCGAAAGAGATGGAATCCGGTGAAGT 1159
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 926 GAAGATTCACAGGCTTGCTTGTGATATTGTTTATTCGAAAGAGATGGAACCCGGTGAAGT 985
Query 1160 AGACAACTGTTTAGTTCTA-GATTTGAGGAGAAAGTTGTTGGTTGAACTGGAGAAGTTGA 1218
||||| |||||| |||| | | || ||||| |||||||||||||||||| ||||||||||
Sbjct 986 AGACAGCTGTTTGGTTC-AGGGTTGGAGGAAAAAGTTGTTGGTTGAACTCGAGAAGTTGA 1044
Query 1219 TTCCCTTGCCAATTGTTATTCCTGAGAGAAGGTTGGAACATTTGGTTGAGACTGCTGTGA 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 TTCCCTTGCCAATTGTTATTCCTGAGAGAAGGTTGGAACATTTGGTTGAGACTGCTGTGA 1104
Query 1279 TGGACCAGATTGATACGTGTATGTATCATAACTCATGTGATGCAGTATCGCTTTACAAGG 1338
|||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||
Sbjct 1105 TGGACCAGATTGATACATGTCTGTATCATAACTCATGGGATGCAGTATCACTTTACAAGG 1164
Query 1339 ATCACTGTTGCGGTAGAGACCAAATTCCTTCAGAGACAGTCCAGATTTTGGTGGCACACA 1398
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1165 ATCACTGTTGCGGTAGAGATCAAATTCCTTCAGAGACAGTCCAGATTTTGATGGCACACA 1224
Query 1399 AAAATGAAGTGTGGTTTGTGCAATTCTCTAATAGTGGCAAATATCTGGCCACTGCATCAA 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 AAAATGAAGTGTGGTTTGTGCAATTCTCTAATAGTGGCAAATATCTGGCCACTGCATCAA 1284
Query 1459 GCGATTGTACAGCTATAATATGGAAGGTACTGGATGACAACAAAGTCGAACTGAAGCACA 1518
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1285 GCGACTGTACAGCTATAATATGGAAGGTACTGGATGATAACAAAGTCGAACTGAAGCACA 1344
Query 1519 CACTTGAGAGCCACCAAAATCCAGTTTCTTTTGTCTCGTGGAGTCCTGACGATACTAAAC 1578
| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1345 CGCTTGAGAGCCACCAAAATCCAGTTTCTTTTGTCTCTTGGAGCCCTGACGATACTAAAC 1404
Query 1579 TGCTTACATGCGGAAACGCTGAGGTTCTTAAGCTATGGGATGTTGACACAGGTGTGTTGA 1638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405 TGCTTACATGCGGAAACGCTGAGGTTCTTAAGCTATGGGATGTTGACACAGGTGTGTTGA 1464
Query 1639 GACACACATTTGGAAACAACAATACTGGATTCACTGTCAGCTCTTGCGCATGGTTCCCTG 1698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1465 GACACACATTTGGAAACAACAATACTGGATTCACTGTCAGCTCTTGCGCATGGTTCCCTG 1524
Query 1699 ACTCAACTCGGCTTGTCTGTGGCAGTTCTGACCCAGAAAGAGGGATTGTAATGTGGGACA 1758
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1525 ACTCAACTCGGCTTGTCTGTGGCAGTTCTGACCCAGAAAGAGGGATTGTAATGTGGGATA 1584
Query 1759 CTGATGGAAACGAGATCAAAGCCTGGAGAGGAACGAGAATTCCAAAGGTGGTGGATTTGG 1818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1585 CTGATGGAAACGAGATCAAAGCCTGGAGAGGAACGAGAATTCCAAAGGTGGTGGATTTGG 1644
Query 1819 CTGTGACGCCGGATGGCGAGAGTATGATTACAGTGTTTTCGGATAAAGAGATCCGGATCT 1878
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1645 CTGTGACGCCGAATGGCGAGAGTATGATTACAGTGTTTTCGGATAAAGGGATCCGGATCT 1704
Query 1879 TGAATTTGGAGACAAAAGTCGAACGTGTTATCTCTGAGGAACAGCCAATTACTTCCCTTT 1938
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1705 TGAATTTAGAGACAAAAGTCGAACGTGTTATCTCTGAGGAACAGCCAATTACTTCCCTTT 1764
Query 1939 CAATTTCTGGTGATGGTAAGTTTTTTATAGTCAACTTGAGCTGCCAAGAGATACATCTTT 1998
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1765 CGATTTCTGGAGATGGTAAGTTTTTTATAGTCAACTTGAGCTGCCAAGAGATACATCTTT 1824
Query 1999 GGGATCTTGCTGGAGAGTGGAAACAACCATTGAAGTTCTCGGGTCACAGGCAGAGCAAAT 2058
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1825 GGGATCTTGCTGGAGAGTGGAAACAACCATTGAAGTTCTCGGGGCACAGGCAGAGCAAAT 1884
Query 2059 ACGTGATACGGTCATGTTTTGGTGGGTTGGATAGTTCGTTCATCGCCAGTGGAAGTGAGG 2118
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 1885 ACGTGATACGGTCATGTTTTGGTGGGTTGGACAGTTCGTTCATTGCCAGTGGAAGCGAGG 1944
Query 2119 ATTCACAGGTTTACATATGGAATCTAAAGAACACAAAGCCGCTTGAAGTGTTATCAGGTC 2178
||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1945 ATTCACAAGTTTACATATGGAATCTAAAGAACGCGAAGCCGCTTGAAGTGTTATCAGGTC 2004
Query 2179 ATTCGATGACCGTAAACTGTGTAAGCTGGAACCCGAAAAATCCTCGGATGCTAGCCTCTG 2238
|||| ||||| || |||||||| ||||||||||||||||||||||||||| | |||||||
Sbjct 2005 ATTCCATGACTGTGAACTGTGTGAGCTGGAACCCGAAAAATCCTCGGATGTTGGCCTCTG 2064
Query 2239 CTAGTGATGACCAAACCATCCGTATTTGGGGACCGGGCAAACCGAACAAACCACTGAACT 2298
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2065 CTAGTGATGACCAAACCATCCGTATTTGGGGACCGGGCAAACCGAACAAACCAGAGAACT 2124
Query 2299 GATTAGATAACCAGAAACCGTAGTAGCTTTAAACCAGGACCTAGTTCTAGTAGTTCCACA 2358
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2125 GATTAGATAACCATAAACCGTAGTAGCTTTAAACCAGGACTTAGTTCTAGTAGTTCCACA 2184
Query 2359 TTTGTGTATAGTTCATTTCTGGttttttcttttttGGTGGTCCTTATTGGCTTTGCAGAA 2418
||||||||||||| |||||| ||| | | ||||||||||||||||||||
Sbjct 2185 TTTGTGTATAGTTAATTTCT--TTT----------G-T--TCCTTATTGGCTTTGCAGAA 2229
Query 2419 CAATCTCTTGCTTTTTGAGTTTTGGTACAC 2448
|||| |||||||||||||||||||||||||
Sbjct 2230 CAATTTCTTGCTTTTTGAGTTTTGGTACAC 2259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94806619805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5