BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43930.4
Length=2831
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494609 jgi|Araly1|494609|fgenesh2_kg.8__425__AT5G43930.3 2846 0.0
Ahg470391 jgi|Araly1|470391|fgenesh2_kg.1__345__AT1G04140.2 1007 0.0
> Ahg494609 jgi|Araly1|494609|fgenesh2_kg.8__425__AT5G43930.3
Length=2488
Score = 2846 bits (1541), Expect = 0.0
Identities = 1741/1837 (95%), Gaps = 16/1837 (1%)
Strand=Plus/Plus
Query 756 TTGGTTGGTCAGATTCCACCCGCATCATTCAGAAATAGTTGCGAGTGGAAGTTTAGATCT 815
|||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 605 TTGGGTGGTCAGATTCCACCCGCTTCATTCAGAAATAGTTGCTAGTGGAAGTTTAGATCT 664
Query 816 CGAGGTCCGCTTATGGAATACCACAACTTCTGAATGCATTAGATCTCATCTATTCTATCG 875
|||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||
Sbjct 665 TGAGGTCCGCTTATGGAATACCACAACTTGTGAATGTATTAGATCTCATGTATTCTATCG 724
Query 876 GCCTATTGCTTCTATCGCTTTCCATGCTGAGGGTGAACTACTTGCTGTTGCTTCTGGTCA 935
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 TCCTATTGCTTCTATAGCTTTCCATGCTGAGGGTGAACTACTTGCTGTTGCTTCTGGTCA 784
Query 936 TAAGCTGCACATGTGGCACTACAATAGGAGAGGAGAGGGATCATCACCAACT-GTTGTAT 994
|||||||||||||| ||||||||||||||||||||||| ||||||||||| | |||||||
Sbjct 785 TAAGCTGCACATGTAGCACTACAATAGGAGAGGAGAGGAATCATCACCAA-TCGTTGTAT 843
Query 995 TGAAGACGAGGCGATCTTTGAGAGCTGTACACTTTCACCCTCATGGGGCTCCATTACTTT 1054
||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| || |
Sbjct 844 TGAAGACGAGGCGCTCTCTGAGAGCTGTACACTTTCACCCTCATGGGGCACCATTTCTCT 903
Query 1055 TGACCGCAGAGTGGCAGGTGAATGAGATTGATTCATTAGATTCTTCAATGTCTAGAGCAA 1114
||||||| | | |||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 904 TGACCGC--A---G-AGGTGAATGAAATTGATTCATTAGATTCTTCGATGTCTAGAGCAA 957
Query 1115 CATCTATGGGCTACTTGAGGTATCCGCCCCCTGCTATTTTGTTCACAAGCACGGAAAGCA 1174
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 958 CATGTATGGGCTACTTGAGGTATCCGCCCCCTGCTATTTTATTCACAAGCACGGAAAGCA 1017
Query 1175 ATCAAACTAGTTTGGCAGCAGAAAATGAGAACAGAACATCGTCTCCTCCTCTTCCCTTGG 1234
||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1018 ATCGAACTAGTTTGGCATCAGAAAATGAGAACAGAACATCGTCTCCTCCTTTTCCCTTGG 1077
Query 1235 CTACATCCAGTGGTCCTTCTGGTCCAAATAGTGTTCCAGGAAATTCTCCCAGCAACATAT 1294
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct 1078 CTACATCCAGTGGTCCTTCTGGTTCAAATAGTGTTCCAGGAAATTCTCCTAGCAATATAT 1137
Query 1295 TTCTTACCCGAGCTGGAGATAGAACTTCTCCTGCAGTTGATGGCATGGATGTAGATGAAG 1354
|| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1138 TTTTTACCCGAGCTGGAGATAGAA---CTCCTGCAGTTGATGGCATCAATGTAGATGAAG 1194
Query 1355 CTCAACCTGTTGGAAGAAATGGAATCCCTAGCCAAGTTTCAAATAGATCAGATTTCCCTG 1414
||||||||||||||||||| ||||| |||||||||||||||| | |||||||||||||||
Sbjct 1195 CTCAACCTGTTGGAAGAAACGGAATTCCTAGCCAAGTTTCAACTCGATCAGATTTCCCTG 1254
Query 1415 AGCTTGGACAGATTCGGCAATTATTTCACTTTAGGGATCGAGTTTCCTGGGAGTTACCTT 1474
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1255 AGCTTGGACAGATTCGGCAATTATTTCACTTTAGGGATAGAGTTTCCTGGGAGTTACCTT 1314
Query 1475 TTCTACAAGGATGGTTGATGGCTCAAGGTCATGGTGTTGCTAATCCAGTGGTTACTCCTA 1534
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1315 TTCTACAAGGATGGTTGATGGCTCAAGGTCATGGTGTTGCTAATCCAGTGGTTCCTCCTA 1374
Query 1535 CTGGCAGTAGTAATCATGGCATCTCAGCTCCATCCTCAACAGCCAGTCTGGAGGCTGCAG 1594
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1375 CTGGCAGTAGTAATCATGGCATCTCAGCTCCATCTTCAACATCCAGTCTGGAGGCTGCAG 1434
Query 1595 TAGCGTTATTAGAAATCCCGAGTGGTGTTAACTTACATGCGGTGTCTAGAAGAGGCGGGG 1654
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 1435 TAGCGTCATTAGAAATCCCGAGTGGTGTTAACTTACATGCGGTGTCTGGAAGAGGCAGAG 1494
Query 1655 CTCAGGAACAAACTTCACAACCCCAATTCTCGAGAACTGGATTACCGGAAGGTGTATCTT 1714
| |||||||||||||||||||||||||||| | || |||||||||||| |||||| ||||
Sbjct 1495 CCCAGGAACAAACTTCACAACCCCAATTCTTGGGATCTGGATTACCGGGAGGTGTGTCTT 1554
Query 1715 CTCGTAACACTCAACATGGAAGTGATGCTCAACCTGTAGTAAATAGGGTCCAGTCTGAGC 1774
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1555 CTCGTAACACGCAACATGGAAGTGATGCTCAACCTGTAGTGAACAGGGTCCAGTCTGAGC 1614
Query 1775 TTGCTACCTCAATTGCTGCTTC-G--GCTGCAGCAGCTGCTGCTGCAGAATTACCTTGTA 1831
|||||||||||||||||||||| | || |||||||| ||||||||||||||||||||||
Sbjct 1615 TTGCTACCTCAATTGCTGCTTCGGCAGCAGCAGCAGCAGCTGCTGCAGAATTACCTTGTA 1674
Query 1832 CTGTCAAACTCAGAATGTGGTCGCATGACATCAAAGACCCATATGCACAACTGAAATCCG 1891
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 CTGTCAAACTCAGAGTGTGGTCGCATGACATCAAAGACCCATATGCACAACTGAAATCCG 1734
Query 1892 ACAGATGTCTATTTACAATACCGCATGCCGTCCTTTGCAGTGAAATGGGAGCTCATTATT 1951
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1735 ACAGATGTCTATTTACAATACCGCATGATGTCCTTTGCAGTGAAATGGGAGCTCATTTTT 1794
Query 1952 CGCCATGTGGGAGATATTTAGCGGCCTGTGTTGCGTGTGTTTTTCCTCATGGTGAGATAG 2011
||||||| ||||||||||||| ||||||||||| |||||||||||||||| |||||||
Sbjct 1795 CGCCATGCAGGAGATATTTAGCAGCCTGTGTTGCATGTGTTTTTCCTCATGCCGAGATAG 1854
Query 2012 ATCCTGGACTGCAGACACAAGCTCAACAAGATTCAGGGCTTGCAACTTCCCCAACTCGAC 2071
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1855 ATCCTGGACTCCAGACACAAGCCCAACAAGATTCAGGGCTTGCAACTTCCCCAACTCGAC 1914
Query 2072 ACCCTGTCACAGCACACCAAGTCATTTACGAGCTTCGTGTGTATTCTCTCCAGAAGGAAA 2131
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1915 ACCCTGTCACAGCACACCAAGTCATTTACGACCTTCGTGTGTATTCTCTCCAGAAGGAAA 1974
Query 2132 GTTTTGGTTCAGTACTTGTGTCACGGGCAATTAGAGCTGCACATTGCTTGACCTCTATCC 2191
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 GTTTTGGTTCAGTACTCGTGTCACGGGCAATTAGAGCTGCACATTGCTTGACCTCTATCC 2034
Query 2192 AGTTCTCACCCACTTCGGAGCATATACTACTTGCATATGGGCGGCGTCATGGTTCTCTTT 2251
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2035 AGTTCTCACCCACCTCGGAGCATATACTTCTTGCATATGGGCGGCGTCATGGTTCTCTTT 2094
Query 2252 TGAGGAGCATCGTTAGTGATGGTGAAACAACATCACATTTTTTCACAGTATTGGAGATAT 2311
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 2095 TGAGGAGCATCGTTAGTGATGGTGAAGCAACATCACATTTTTTCACAGTGTTGGAGATAT 2154
Query 2312 ACAGAGTTTCAGATATGGAGCTTGTGAGAGTACTGCCAAGTTCAGAGGATGAAGTGAACG 2371
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 2155 ACAGAGTTTCAGATATGGAGCTTGTGAGAGTACTGCCAAGTTCAGATGATGAAGTGAATG 2214
Query 2372 TTGCGTGTTTTCATCCTTCTCCTGGAGGAGGTCTTGTTTATGGGACAAAGGAGGGGAAAC 2431
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2215 TTGCTTGTTTTCATCCTTCTCCTGGAGGAGGTCTTGTTTATGGGACAAAGGAGGGGAAAC 2274
Query 2432 TGAGGATCTTCCAGTACAATACAGCTGCTACCTCAAACTTCACAGGACCAAACACCTAAC 2491
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2275 TGAGGATCTTCCAGTACAATACAGCTGCTACCTCAAACTTCACTGGACCAAACACCTAAC 2334
Query 2492 CTGAGGTAGCGTAGAATTATAATAAAGAAGGTGCATTAGAGTGGTAAGCAAGCAAGAAGC 2551
|||||||||||||||||||| ||||||||| ||||||| |||| || |||||||||||||
Sbjct 2335 CTGAGGTAGCGTAGAATTATTATAAAGAAGATGCATTATAGTGTTA-GCAAGCAAGAAGC 2393
Query 2552 AAACATAGGTTTCATCGAATCTTTTCCACTC-CTCTT 2587
||||||||||||||| ||||||||||||| | |||||
Sbjct 2394 AAACATAGGTTTCATTGAATCTTTTCCACACTCTCTT 2430
Score = 647 bits (350), Expect = 0.0
Identities = 430/468 (92%), Gaps = 8/468 (2%)
Strand=Plus/Plus
Query 226 TTCAAGATGACTCAATCTATCTGTTCGTCGTCACAAGATCAATCTTCTTCTCCTCGCTCT 285
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 147 TTCAAGATGACTCAATCTTTCTGTTCGTCGTCACAAGATCAATCTTCTTCTCCTCGTTCT 206
Query 286 TTGA-TCACACCACGCAAATCGGCGACGAAGTTTCACCGCCGCAGGGGGAGGAGTGTATT 344
|||| || |||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 207 TTGATTC-CACCACGCAAATCGGCGACGAATTTTCACCGCCGCAGGTGGAGGAGTGTATT 265
Query 345 TAACATGCTGGTTCAGAGGGAAATGTCACCAAAGGCTAAGTTTGTGCCAAGGAAACGATG 404
|| ||| ||||||||||| |||||||||| ||||| | |||||||||||||||||| ||
Sbjct 266 TAGTATGTTGGTTCAGAGGAAAATGTCACCGAAGGCGACGTTTGTGCCAAGGAAACGGTG 325
Query 405 GGGTAAGAGTAGATGGTATACTGATTCTTCATGCGGAACCAACAACGAGTC-TATGAAAG 463
||| ||||||||||||||| |||||||||||||||||| ||||| ||| | | ||| ||
Sbjct 326 GGGGAAGAGTAGATGGTATGCTGATTCTTCATGCGGAATCAACAGTGAGCCGT-TGAGAG 384
Query 464 AGACGGGACAAAGTCTTACCTCATGGGTTGAGGCAGAGTCATTGCAGCATTTATCTGCAA 523
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 385 AGGCGGGACAAAGTCTTACTTCATGGGTTGAGGCAGAGTCATTGCAGCATTTATCTGCAA 444
Query 524 AATATTGTCCTCTTGGAGCTCCTCCAAGGTCAACTATTGCTGCGGCTTTTAGTACTGATG 583
|||||| ||||||||||||||| || ||||| |||||||| |||||||||| ||||||||
Sbjct 445 AATATTATCCTCTTGGAGCTCCCCCGAGGTCGACTATTGCAGCGGCTTTTAATACTGATG 504
Query 584 GAAGAACTCTTGCTTCTACACATGGTGATCATACTGTGAAGATTATTGATTGTGAAACTG 643
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 505 GAAGAACTCTTGCTTCTACACATGGTGATCATACTGTAAAGATTATTGATTGTGAAACTG 564
Query 644 GAAACTGCTTAAAAGTTTTGA-CTGGCCAT-AGGAGGACTCCTTGGGT 689
||||||||||||||||||||| | | |||| | ||||||||||||||
Sbjct 565 GAAACTGCTTAAAAGTTTTGAAC-GACCATCAA-AGGACTCCTTGGGT 610
Score = 189 bits (102), Expect = 1e-46
Identities = 137/152 (90%), Gaps = 9/152 (6%)
Strand=Plus/Plus
Query 39 AAAAACCA-AACTGTTTAGGTTTCGTCGTCGACGCGCTCTCATCAACAAAGTCCCATACG 97
||||| || |||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1 AAAAA-CACAACTGTTTAGGTTTCGTCGTCGACGCGCTC--ATCAACAAAGTCCCAGACG 57
Query 98 AA-A--TTTAACCAAAACTATATATCGAGGGACGAAGCGCGTGACG-TT-AGATCGGAGA 152
|| | ||||||||| || |||| |||||||||||||||||| ||| || ||||||||||
Sbjct 58 AAGAAATTTAACCAATACCATATCTCGAGGGACGAAGCGCGTTACGATTTAGATCGGAGA 117
Query 153 TCTCACCGAGATCGCCGGTGAATTAGGGTTTC 184
|| |||||||||||||||||||||||||||||
Sbjct 118 TCACACCGAGATCGCCGGTGAATTAGGGTTTC 149
> Ahg470391 jgi|Araly1|470391|fgenesh2_kg.1__345__AT1G04140.2
Length=3064
Score = 1007 bits (545), Expect = 0.0
Identities = 1055/1291 (82%), Gaps = 75/1291 (6%)
Strand=Plus/Plus
Query 1220 CTCCTCTTCCCTTGGCTACATCCAG-TGGTCCTTCTGG-TCCAAAT-AGTGTTCCAGGA- 1275
||||||||||| ||||||| | | | || || |||||| ||| || | ||| ||| ||
Sbjct 1338 CTCCTCTTCCCATGGCTACGT-CTGCTGATCTTTCTGGTTCC-TATCA-TGTCCCA-GAC 1393
Query 1276 AATTCTCCCAGCAACATATTT-CTTACCCGAGCTGGAGATAGAACTTCT--C-CTGCAGT 1331
|||||| | | || | |||| | | ||| |||||||| ||||| |||| | |||||||
Sbjct 1394 AATTCTGCTGGTAATACATTTAC-TGCCCAAGCTGGAGCTAGAAATTCTACCACTGCAGT 1452
Query 1332 TGATGGCATGGATGTAGATGAAGCTCAACCTGTTGGAAGAAATGGA-ATCCCTAGCCAAG 1390
||||| |||||||||||||||||||||||||| |||||||||| || |||| || ||||
Sbjct 1453 TGATGCCATGGATGTAGATGAAGCTCAACCTGCTGGAAGAAATAGAGTTCCC-AGTCAAG 1511
Query 1391 TTTCAAAT-AGATCAGATTTCCCT-GAGCTTGGACAGA-TTCGGCAATTATTTCACTTTA 1447
|||||| | | | ||||||| || ||| ||||||| | ||| ||| |||||||| ||||
Sbjct 1512 TTTCAAGTCA-ACCAGATTT-ACTCGAGTTTGGACA-ACTTCAGCAGTTATTTCAATTTA 1568
Query 1448 GGGATC-GAGTTTCCTGGGAGTTACCTTTTCTACAAGGATGGTTGATGGCTCAAGGTCAT 1506
| || | ||| ||||||||||||||||||||||||||| ||||||||||||||| | ||
Sbjct 1569 GAGA-CAGAGGTTCCTGGGAGTTACCTTTTCTACAAGGGTGGTTGATGGCTCAAAGCCA- 1626
Query 1507 GG-TGTTGCTAATCCAGTGGTTAC-TCCTACTGGCAGTAGTAATCATGGCATCTCAGCTC 1564
|| || ||||||| |||||| | | ||||||||| |||||| ||||| || |||| |||
Sbjct 1627 GGCTGGTGCTAATTCAGTGGCT-CTTCCTACTGGTAGTAGTGGTCATGTCAACTCAACTC 1685
Query 1565 C--AT-C-----C-TCA---ACAGCCAGTCTGGAGGCTGCAGTAGCGTTATTAGAAA-TC 1611
| || | | ||| ||||||||||| ||||| | |||||||| |||||||| ||
Sbjct 1686 CTTATACGGGTTCTTCATCCACAGCCAGTCTAGAGGCCGGAGTAGCGTCATTAGAAATTC 1745
Query 1612 CCGAGTGGTGTTAACTTACATGCGGTGTCTAG-AAGAGGCGGGGCTCAGGAACAAACTTC 1670
| | | |||||||||||| ||| ||| ||| | |||||| | | | ||| | || |||
Sbjct 1746 CTG-GAGGTGTTAACTTATATGGGGTTTCT-GCAAGAGGTGACTCCCGGGACCGAA-TTC 1802
Query 1671 -ACAACCCCAATTCTCGA-GAACTGGATTACCGGAAGGTGTATCTTCTCGTAACACTCAA 1728
||| ||| ||| | | || |||| ||| | |||||| | || |||||||||||||||
Sbjct 1803 TACAGTCCCGCTTCGC-AGGATCTGGTTTAGCAGAAGGTCTTTCCTCTCGTAACACTCAA 1861
Query 1729 CATG--GAAG-TGATGCTCAACCTGTAGTAAATAGGGTCCAGTCTGAGCTTGCTACCTCA 1785
|||| | || |||| |||||||||| ||||| || ||| ||||| || ||||| |||
Sbjct 1862 CATGAAGGAGCTGATACTCAACCTGTGGTAAACAGAATCCCTTCTGAACTGGCTACTTCA 1921
Query 1786 ATTGCTGCTTCGGCTGCAGCAGCTGCTGCTGCAGAATTACCTTGTACTGTCAAACTCAGA 1845
||||||| | | |||| | | | | | ||||| || |||||||| |||
Sbjct 1922 ATTGCTG---C--C-GCAG-A---G-T--T---G-----CCTTGCACCGTCAAACTGAGA 1960
Query 1846 ATGTGGTCGCATGACATCAAAGACCCATATGCACA-ACTGAAATCCGACAGATGTCTATT 1904
||||||| ||||||||||||||||||| |||| | |||||| || |||| ||||| |||
Sbjct 1961 GTGTGGTCACATGACATCAAAGACCCATGTGCA-ATACTGAAGTCTGACAAATGTCGATT 2019
Query 1905 TACAATACCGCATGCCGTCCTTTGCAGTGAAATGGGAGCTCATTATTCGCCATGTGGGAG 1964
||||||| ||||| || ||||||||||| |||||||| |||| ||| |||||||||||
Sbjct 2020 AACAATACATCATGCTGTTCTTTGCAGTGAGATGGGAGCCCATTTTTCTCCATGTGGGAG 2079
Query 1965 ATATTTAGCGGCCTGTGTTGCGTGTGTTTTTCCTCATGGTGAGATAGATCCTGGACTGCA 2024
||||||||| ||||||||||| |||||| |||||||| ||| | |||||| || ||||
Sbjct 2080 ATATTTAGCAGCCTGTGTTGCATGTGTTATTCCTCATACTGAAACAGATCCAGGTTTGCA 2139
Query 2025 GACACAAGCT-CAACAAGATTCAGGGCTTGCAACTTCCCCAACTCGACACCCTGTCACAG 2083
||||| | | ||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 2140 GACAC-TGGTCCAACAAGATTCAGGGCTCGCAACTTCCCCTACTCGACATCCTGTCACAG 2198
Query 2084 CACACCAAGTCATTTACGAGCTTCGTGTGTATTCTCTCCAGAAGGAAAGTTTTGGTTCAG 2143
|||| |||||||| || || |||||||||||||||||| | |||||| |||||||| |
Sbjct 2199 CACATCAAGTCATGTATGAACTTCGTGTGTATTCTCTCGAAAAGGAATCATTTGGTTCGG 2258
Query 2144 TACTTGTGTCACGGGCAATTAGAGCTGCACATTGCTTGACCTCTATCCAGTTCTCACCCA 2203
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 2259 TACTTGTGTCCCGGGCAATTAGGGCTGCACATTGCTTGACCTCTATCCAGTTCTCACCAA 2318
Query 2204 CTTCGGAGCATATACTACTTGCATATGGGCGGCGTCATGGTTCTCTTTTGAGGAGCATCG 2263
| || ||||| || || ||||||||||| |||||||||||||||||||||| |||||| |
Sbjct 2319 CCTCCGAGCACATTCTGCTTGCATATGGTCGGCGTCATGGTTCTCTTTTGAAGAGCATTG 2378
Query 2264 TTAGTGATGGTGAAACAACATCACATTTTTTCACAGTATTGGAGATATACAGAGTTTCAG 2323
| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 2379 TGAGTGATGGAGAAACAACATCACATTTTTTCACAGTGTTGGAGATTTACAGAGTTTCAG 2438
Query 2324 ATATGGAGCTTGTGAGAGTACTGCCAAGTTCAGAGGATGAAGTGAACGTTGCGTGTTTTC 2383
||||||| || ||||||||||| ||||| |||||||||||||| || ||||| || ||||
Sbjct 2439 ATATGGAACTGGTGAGAGTACTCCCAAGCTCAGAGGATGAAGTTAATGTTGCTTGCTTTC 2498
Query 2384 ATCCTTCTCCTGGAGGAGGTCTTGTTTATGGGACAAAGGAGGGGAAACTGAGGATCTTCC 2443
||||||||||||| ||||||||||| ||||| ||||||||||| ||||| ||||||||||
Sbjct 2499 ATCCTTCTCCTGGGGGAGGTCTTGTCTATGGAACAAAGGAGGGAAAACTAAGGATCTTCC 2558
Query 2444 AGTACAATACAGCTGCTACCTCAAACTTCAC 2474
|||||| ||||||||| | || ||| ||||
Sbjct 2559 GGTACAACACAGCTGCTGCGTCCAACCTCAC 2589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106843137225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5