BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43935.1
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494607 jgi|Araly1|494607|fgenesh2_kg.8__423__AT5G43935.1 1166 0.0
> Ahg494607 jgi|Araly1|494607|fgenesh2_kg.8__423__AT5G43935.1
Length=867
Score = 1166 bits (631), Expect = 0.0
Identities = 776/846 (92%), Gaps = 10/846 (1%)
Strand=Plus/Plus
Query 45 AACCAAGAAGATCCCTATCGTTGATCTAAGCGATCCAAGCGACGAGCTCGTGGCTCATGC 104
|||||||||||||||| | ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 24 AACCAAGAAGATCCCTGTGGTTGATCTAAGCGATCCCAGCGACGAGCTTGTGGCTCATGC 83
Query 105 AGTGGTGAAAGCGAGCGAAGAGTGGGGGATTTTTC-AGTTGGTTAACCACGGCATTCCTG 163
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 84 AGTGGTGAAAGCGAGCGAAGAGTGGGGGATTTTTCAAG-TGGTTAACCACGGCATTCCTG 142
Query 164 CCGAATTGATGCGGCGGCTGCAAGAAGTGGGGAGGCAGTTTTTCGAGCTCCCGGCTTCCG 223
| || || ||||| || || |||||||| ||||||||||||||||||||||||||| |||
Sbjct 143 CGGACTTAATGCGACGCCTTCAAGAAGTCGGGAGGCAGTTTTTCGAGCTCCCGGCTACCG 202
Query 224 AAAAAGAATCTGTCACAAGGCCAGCCGACTCCCAAGACATCGAAGGTTTCTTTTCCAAGG 283
|||| ||||||||||||||||| | |||||||||||||||||||||| |||| |||| |
Sbjct 203 AAAAGGAATCTGTCACAAGGCCGGTGGACTCCCAAGACATCGAAGGTTACTTTCCCAAAG 262
Query 284 ATCCaaaa-aaaCTAAAGGCTTGGGACGATCATCTGATTCACAATATCTGGCCACCATCG 342
| |||||| | | |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 263 ACCCAAAACATA-TAAAGGCTTGGGACGATCATCTGATTCACAATATCTGGCCACCAGCG 321
Query 343 TCCATCAACTATAGATATTGGCCTAACAATCCTTCAGATTACAGTGGTGATGGTTTCAGG 402
|| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||
Sbjct 322 TCTATCAACTATAGATATTGGCCTAACAATCCTTCAGATTACAGTGATGACGGTTTTAGG 381
Query 403 GAGGTGACTAAGGAGTACACAAGGAATGTTACAAATCTAACGGAGAAGATTGTTGG--T- 459
|| |||||| |||||||||||||||| || || || |||||||||||||||||||| |
Sbjct 382 GATGTGACTGAGGAGTACACAAGGAACGTGACGAAGCTAACGGAGAAGATTGTTGGTCTA 441
Query 460 GGC---GATAAAGCACAGTATGTGATGAGGATCAATTACTATCCGCCATCGGATTCAGCC 516
||| |||||| |||||||||||||||||||||||| ||||||||| ||||||| ||
Sbjct 442 GGCGGGGATAAAACACAGTATGTGATGAGGATCAATTGCTATCCGCCGTCGGATTTAGTT 501
Query 517 ATCGGAGCACCGGCGCACACAGATTTTTGTGGACTCGCACTTCTTGTCTCCAACGAGGTT 576
|||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct 502 ATCGGAGCACCGGCGCACACAGATCTCTGTGCACTCGCACTTCTTGTCTCCAACGAGGTT 561
Query 577 CCAGGGCTTCAAGTGTTCAAGGATGACCATTGGTTCGACGTTGAGTATATCAACTCCGCT 636
|||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||
Sbjct 562 CCAGGGCTTCAAGTGTTCAAGGATAACCACTGGTTTGACGTTGAGTATATCAACTCCGCA 621
Query 637 GTCATTGTCCTCATTGGGGATCAGATCATGAGGATGAGCAACGGGAAGTACAAGAACGTG 696
|||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 622 GTCATTGTACTCATCGGGGATCAGATCATGAGGATGAGCAACGGGAGGTACAAGAACGTG 681
Query 697 CTACACAGATCAATAATGGATGCGAAAAAGACAAGAATGTCGTGGCCGATTTTGGTAGAG 756
|||||||||||| ||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 682 TTACACAGATCAACAATGGATAAGGAAAAGACAAGAATGTCGTGGCCGGTTTTGGTAGAG 741
Query 757 CCTAAGCGTGGTTTGGTCGTGGGACCTTTGCCTGAGCTCACGGGAGACGAGAATCCTCCC 816
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 742 CCTAAGCATGGTTTGGTCGTGGGACCTTTGCCTGAGCTCACGGGAGATGAGAATCCTCCC 801
Query 817 AAGTTTGAGTCTTTAACTTTTGAAGACTATGTATACCGCAAGATCATAAAGGTTCTTCGT 876
||||||||||||||||||||| ||||||| |||||||||||||||| |||| ||||||||
Sbjct 802 AAGTTTGAGTCTTTAACTTTTCAAGACTACGTATACCGCAAGATCAAAAAGCTTCTTCGT 861
Query 877 GATTGA 882
||||||
Sbjct 862 GATTGA 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32671339869
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5