BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43940.2
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494606 jgi|Araly1|494606|fgenesh2_kg.8__422__AT5G43940.1 1910 0.0
> Ahg494606 jgi|Araly1|494606|fgenesh2_kg.8__422__AT5G43940.1
Length=1259
Score = 1910 bits (1034), Expect = 0.0
Identities = 1133/1180 (96%), Gaps = 9/1180 (1%)
Strand=Plus/Plus
Query 180 CTGCGGTGGCTTACGAGCCGAACAAGCCTCTGGTCATCGAAGATGTGCAAGTGGCTCCAC 239
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 64 CTGCGGTGGCTTACGAGCCGAACAAGCCTCTGGTCATCGAAGATGTGCAAGTAGCTCCTC 123
Query 240 CTCAAGCTGGTGAGGTTCGGATCAAGATCCTCTACACTGCTCTTTGTCACACCGACGCTT 299
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 CTCAAGCCGGTGAGGTTCGGATCAAGATCCTCTACACTGCTCTTTGTCACACCGACGCTT 183
Query 300 ACACTTGGAGCGGCAAGGATCCTGAAGGTCTCTTTCCTTGTATTCTAGGTCATGAGGCTG 359
||||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||
Sbjct 184 ACACTTGGAGCGGCAAGGATCCTGAAGGTCTCTTTCCATGTATCCTCGGTCATGAAGCTG 243
Query 360 CTGGGATTGTTGAGAGTGTTGGTGAAGGAGTAACTGAAGTTCAAGCTGGAGATCATGTTA 419
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 244 CTGGGGTTGTTGAGAGTGTTGGTGAAGGAGTAACAGAAGTTCAAGCTGGAGATCATGTAA 303
Query 420 TCCCTTGTTATCAAGCTGAGTGTCGTGAATGCAAGTTTTGCAAATCTGGGAAGACTAACC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 TCCCTTGTTATCAAGCTGAGTGTCGTGAATGCAAGTTTTGCAAATCTGGGAAGACTAACC 363
Query 480 TTTGTGGCAAGGTGAGATCTGCTACTGGTGTTGGGATTATGATGAATGACCGTAAGTCGA 539
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 364 TTTGTGGCAAGGTGAGATCTGCTACTGGTGTTGGGATTATGATGAACGACCGTAAGTCGA 423
Query 540 GGTTCTCGGTTAATGGGAAACCCATTTATCACTTCATGGGTACTTCCACGTTTAGTCAGT 599
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 GGTTCTCGGTTAATGGAAAACCCATTTATCACTTCATGGGTACTTCCACGTTTAGTCAGT 483
Query 600 ATACTGTTGTTCATGATGTTAGCGTCGCCAAAATTGATCCT-ACTGCTCCTTTGGATAAA 658
|||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||
Sbjct 484 ATACTGTTGTTCATGATGTTAGCGTCGCTAAAATTGATCCTCA-TGCTCCTTTGGATAAA 542
Query 659 GTTTGCCTTCTTGGATGTGGTGTTCCCACTGGCCTTGGAGCAGTTTGGAATACTGCAAAA 718
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 GTCTGCCTTCTTGGATGTGGTGTTCCCACTGGCCTTGGAGCAGTTTGGAATACTGCAAAA 602
Query 719 GTAGAACCAGGGTCAAATGTTGCCATTTTCGGTCTTGGCACTGTTGGACTTGCTGTTGCC 778
||||||||||| ||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 603 GTAGAACCAGGTTCAAATGTTGCCATTTTTGGTCTTGGCACTGTGGGGCTTGCTGTTGCT 662
Query 779 GAGGGTGCGAAAACAGCTGGTGCTTCAAGGATCATTGGCATTGACATCGATAGCAAGAAG 838
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 663 GAGGGTGCGAAAACAGCTGGTGCTTCAAGGATCATTGGCATTGATATCGATAGCAAGAAG 722
Query 839 TATGAAACTGCAAAGAAGTTTGGTGTTAACGAATTTGTGAACCCAAAGGATCACGACAAG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 TATGAAACTGCAAAGAAGTTTGGTGTTAACGAATTTGTGAACCCAAAGGATCACGACAAG 782
Query 899 CCAATTCAGGAAGTGATTGTCGATCTCACTGATGGCGGTGTTGACTACAGCTTTGAGTGC 958
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 783 CCAATTCAGGAAGTGATTGTCGAGCTCACTGATGGTGGTGTTGACTACAGCTTTGAGTGC 842
Query 959 ATCGGGAATGTCTCCGTGATGAGAGCTGCATTGGAGTGCTGTCACAAGGGATGGGGAACT 1018
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 ATCGGGAATGTATCCGTGATGAGAGCTGCATTGGAGTGCTGTCACAAGGGATGGGGAACT 902
Query 1019 TCGGTCATAGTTGGTGTTGCAGCATCAGGACAAGAGATATCAACTCGTCCGTTCCAACTC 1078
||||| ||||| ||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 903 TCGGTTATAGTGGGTGTAGCAGCATCAGGACAAGAGATATCAACTCGACCATTCCAACTA 962
Query 1079 GTGACTGGCCGTGTGTGGAAAGGAACAGCTTTTGGTGGTTTCAAGAGTCGAACCCAAGTG 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GTGACTGGCCGTGTGTGGAAAGGAACAGCTTTTGGTGGTTTCAAGAGTCGAACCCAAGTG 1022
Query 1139 CCTTGGCTTGTAGAAAAGTA-CATGAACAAGGAGATAAAAGTGGATGAATACATAACACA 1197
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1023 CCTTGGCTTGTAGAAAAGTATC-TGAACAAGGAGATAAAAGTGGATGAATACATAACACA 1081
Query 1198 CAACTTGACCTTGGGAGAAATCAATAAGGCTTTCGATCTATTGCACGAAGGTACTTGCCT 1257
|||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1082 CAACTTGACCTTGGGAGAGATCAATAAGGCCTTCGATCTATTGCACGAAGGTAGTTGCCT 1141
Query 1258 TCGTTGTGTCCTCGATACCAGCAAATGACTATA----TGGGTCCTCTCTGCTTTAATCTA 1313
|||||||||||||||||||||| |||||| | | ||| |||||||||||| ||||||
Sbjct 1142 TCGTTGTGTCCTCGATACCAGCGAATGACAACACCAATGG-TCCTCTCTGCTTCAATCTA 1200
Query 1314 TGTGTTCTTGTGACTTTCGTCTTTTATCGGTATTGACATT 1353
|||||||||||||||||||||||||||| ||| |||||||
Sbjct 1201 TGTGTTCTTGTGACTTTCGTCTTTTATCAGTAATGACATT 1240
Score = 95.3 bits (51), Expect = 1e-18
Identities = 59/63 (94%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 81 ctctatctctctcATTTCTTCCTGCGTCAATGGCGACTCAAGGTCAGGTTATCACTTGCA 140
|||||||||||| || ||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1 CTCTATCTCTCTAATCTCTTCCTTCGTCAATGGCGACTCAAGGTCAGGTTATCACATGCA 60
Query 141 AAG 143
|||
Sbjct 61 AAG 63
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53859606430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5