BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43960.1
Length=2005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948747 jgi|Araly1|948747|scaffold_800634.1 2252 0.0
> Ahg948747 jgi|Araly1|948747|scaffold_800634.1
Length=1398
Score = 2252 bits (1219), Expect = 0.0
Identities = 1340/1399 (96%), Gaps = 6/1399 (0%)
Strand=Plus/Plus
Query 266 GATCTTGGGTTTTGTTAAATAATGGCGACTCCTTATCCTGGAGCGACGCAGGTGGGTTCG 325
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATCTTGGGTTTTGTTAAATAATGGCGACTCCTTATCCTGGAGCGACGCAGGTGGGTTCT 60
Query 326 TACTTTGTGGGGCAGTATTATCAAGTGTTGCAGCAGCAGCCAGATCTTATTCATCAGTTT 385
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 TACTTTGTTGGGCAGTATTATCAAGTGTTGCAGCAACAGCCAGATCTTATTCATCAGTTT 120
Query 386 TATTCTGAGCCTAGTAGAGCTATTCGTATCGATGGTGATTCCACCGAGACTGCTAATTCT 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 TATTCTGAGCCTAGTAGAGCTATTCGTATCGATGGTGATTCCACCGAGACTGCTAATACT 180
Query 446 TTGCTGCATATTCATAACATGGTTATGTCACTGAATTTCACTGCGATTGAAGTGAAGACG 505
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 TTACTGCATATTCATAACATGGTTATGTCACTGAACTTCACTGCGATTGAAGTGAAGACT 240
Query 506 ATTAATTCAGTCGAGTCGTGGGAAGGTGGTGTTCTTGTGGTGGTTTCAGGATCTGTGAAA 565
|| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 241 ATCAATTCAGTCGAGTCGTGGGAAGGTGGTGTTCTTGTGGTGATTTCAGGCTCTGTGAAA 300
Query 566 ACCAAGGAATTTAGCAACAGAAGGAGTTTTGTGCAGACCTTTTTTCTCGCTCCTCAGGAA 625
|| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 ACAAAGGAATTTACCAACAGAAGGAGTTTCGTGCAGACCTTTTTTCTCGCTCCTCAGGAA 360
Query 626 AAGGGTTATTTTGTTCTCAGTGATGTATTTCTGTTTGTTGATGAGGGTACTGTTTACTAT 685
||||||||||||||||||| |||| |||||| ||||||||||||||| ||||||||||||
Sbjct 361 AAGGGTTATTTTGTTCTCAATGATATATTTCAGTTTGTTGATGAGGGGACTGTTTACTAT 420
Query 686 CATCAGCCTTCTTATTTATCTGAAATCAAGCATGAGGCTCAGCTTAATCCTCCTACCCGT 745
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 421 CATCAGCCTTCTTATTTATCTGAAACCAAGCATGAGGCTCAGCTTAATCCTCCTACCCAT 480
Query 746 CATCCAGATCCCCAAGTTTCTGACTATGTGCTGGAGGAAGAGGCAAGCGATTATGTGAAC 805
|||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||||||||
Sbjct 481 CATCCAGAACCCCAAGTTCCTGACTATGTTCTGGAGGAAGAGGCAAGAGATTATGTGAAC 540
Query 806 GCAGTCCAAATCAAAGATGATCTTGTTGATAAGTACAGTCTGCAAGAGGACCAACATCAA 865
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 GCAGTCCAAATCAAAGATGATCTTGTCGATAAGTACAGTCTGCAAGAGGACCAACATCAA 600
Query 866 CCTCAGCATGAAGACTATGAAGATGAAGTTGCGATTGAGGAAACACCTAGGGAAGAAGTT 925
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CCTCAGCATGAAGTCTATGAAGATGAAGTTGCGATTGAGGAAACACCTAGGGAAGAAGTT 660
Query 926 GCAGTTGATGTGGTACATGAACATCGGGCTGCACCAGTAGAGGAACCAGTTGGTGAAAAA 985
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 661 GCAGTTGATGTGGTACATGAACATCGGGCTGCACCACTAGAGGAACCCGTTGGTGAAAAA 720
Query 986 TCAAAGATGAGTTATGCTTCCATTTTAAAAGTTGCAAAGGAAGCAGCAACTGTACCTGTA 1045
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 721 TCAAAGATGAGTTATGCTTCCATTTTAAAGGTTGCAAAGGAAGCAGCAGCTGTACCTGTA 780
Query 1046 GCTGCTACACAACCATCATATAACAAGAGCTCTCAAGATATTAATGAGTGGGATCAACCA 1105
| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 781 GTTGCTACACAACCATCGTATAACAAGAACTCTCAAGATATTAATGAGTGGGATCAACCA 840
Query 1106 ATGCGGACTCCTTCCCCTCAGCTGGCTGCGCCTCTTGCCCCTATTCAGCAATCAAAC--T 1163
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 841 ATGCGGACTCCTTCCCCTCAGCTGGCTGCGCCTCTTGCCCCTGTTCAGCAATCAAACGCT 900
Query 1164 -CATCCACATATGTTTCCGACTATGGAGCAGAGGCAGAAGATGGCTCCGGTTTTGAAGAC 1222
||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 901 TCATCCACGTATGTTTCCGACTATGGAGCAGAGGCAGAAGATGGCTCTGGATTTGAAGAC 960
Query 1223 TTTGAGTTCAAATCAGTGTACGTTAGGAATTTGCCTTCCGACATATCTGCTTCTGAAATA 1282
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 961 TTTGAGTTCAAATCAGTGTACGTTAGGAATTTGCCGTCCGACATATCTGCTTCTGAAATC 1020
Query 1283 GAGGAAGAGTTTAAGAACTTCGGTACAATCAAGCCTGATGGTGTGTTCCTCAGAACCCGC 1342
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GAGGAAGAGTTTAAGAACTTTGGTACAATCAAGCCTGATGGTGTGTTCCTCAGAACCCGC 1080
Query 1343 AAGGATGTTATGGGCGTATGTTATGCATTTGTTGAGTTTGAGGACATGACTTCCGTTGAG 1402
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AAGGATGTTATGGGCGTTTGTTATGCATTTGTTGAGTTTGAGGACATGACTTCCGTTGAG 1140
Query 1403 AATGCGATTAAGGCTTCTCCTATATACTTGGGTGGAAGGCAAGTATACATTGAGGAACGA 1462
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AATGCCATTAAGGCTTCTCCTATATACTTGGGTGGAAGGCAAGTATACATTGAGGAACGA 1200
Query 1463 AGACCAAATCCCGCTGGTGTTCGCGGAGCAAGAAGAGGAGGAGGACGTGGAAGGGGTGGT 1522
||||| ||||||||||||||||| || |||||| |||||||||||||||||||||||||
Sbjct 1201 AGACCCAATCCCGCTGGTGTTCGTGGTGCAAGACGAGGAGGAGGACGTGGAAGGGGTGGC 1260
Query 1523 TACCCAACAGAAGCACCAAGAGGCCGGTTTGGTGGGCGTGGGTCTGGCAGAGGAAACCAG 1582
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1261 TACCCAACAGAAGCACCAAGAGGCCGGTTTGGTGCCCGTGGGTCTGGCAGAGGAAACCAG 1320
Query 1583 GATGGAGGTGACTACAGGCCAAGAGGAAATGGTTACTACCGCGGTGGTGGTCGCTAA--A 1640
|||||||||||||||||||||||||| || |||||||||||||| |||||||| ||| |
Sbjct 1321 GATGGAGGTGACTACAGGCCAAGAGGTAACGGTTACTACCGCGGAGGTGGTCGTTAAGGA 1380
Query 1641 AGAAAAAAGAATCTCGTCA 1659
| ||||||||||||| |||
Sbjct 1381 A-AAAAAAGAATCTCTTCA 1398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75380594855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5