BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G43970.1

Length=597
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg494602 jgi|Araly1|494602|fgenesh2_kg.8__418__AT5G43970.1          671    0.0  


> Ahg494602 jgi|Araly1|494602|fgenesh2_kg.8__418__AT5G43970.1
Length=509

 Score =  671 bits (363),  Expect = 0.0
 Identities = 455/497 (92%), Gaps = 16/497 (3%)
 Strand=Plus/Plus

Query  12   CTCACTCTCCGAAGCG---ATTCAGAAAGTTTTAACCCaaaaaagcaaaaaaaaaaaaaC  68
            ||||||||||||||||   |||||||||||||||| ||  |||| |   ||||||||| |
Sbjct  1    CTCACTCTCCGAAGCGATTATTCAGAAAGTTTTAA-CC--AAAA-C---AAAAAAAAATC  53

Query  69   TT-TTGTTCACTCGATGGCGGCGAAGAGAATCGGAGCCGGTAAATCTGGCGGCGGAGATC  127
            || ||  ||| || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  54   TTCTT-ATCAATCAATGGCGGCGAAGAGAATCGGAGCCGGTAAATCTGGAGGCGGAGATC  112

Query  128  CAAACATATTAGCGAGGATTTCAAACTCCGAGATCGTGTCCCAAGGAAGACGCGCAGCAG  187
            |||||||||| |||||||| |||||||||||||||||||| |||||||||||||| || |
Sbjct  113  CAAACATATTGGCGAGGATATCAAACTCCGAGATCGTGTCTCAAGGAAGACGCGCCGCTG  172

Query  188  GAGATGCCGTCGAAGTATCGAAGAAACTGCTCCGGAGCACCGGAAAAGCAGCGTGGATCG  247
            ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct  173  GAGATGCCGTCGAAGTATCAAAGAAACTGCTACGGAGCACCGGAAAAGCAGCGTGGATCG  232

Query  248  CTGGGACAACTTTTCTCATACTTGTTGTTCCATTGATCATCGAGATGGATCGAGAGGCAC  307
            |||| |||||||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct  233  CTGGAACAACTTTTCTCATCCTTGTTGTTCCATTGATCATTGAGATGGATCGCGAGGCAC  292

Query  308  AAATCAACGAAATTGAGCTTCAACAGGCCAGTCTCCTCGGAGCTCCACCATCTCCAATGC  367
            ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct  293  AAATCAACGAAATTGAGCTTCAAAATGCCAGTCTCCTCGGAGCTCCACCATCTCCAATGC  352

Query  368  AAAGGGGATTGTAAGAATCCCTTATTATGGATTAGGGTCCTCTGTTTTACGAGt-ttttt  426
            |||||||||||||||||||||| ||||||||||||||| |||||||||||  || |||||
Sbjct  353  AAAGGGGATTGTAAGAATCCCT-ATTATGGATTAGGGTTCTCTGTTTTACCTGTGTTTTT  411

Query  427  tGGTTATATGTTGTTGTTTG-AATTTGAATTTCGTATAAGAGTGGTTTAATTCACATCGT  485
            || ||||||| |||| |||| ||||||||||||||||||||||| |||| || |||||||
Sbjct  412  TG-TTATATGGTGTTTTTTGGAATTTGAATTTCGTATAAGAGTGCTTTACTTTACATCGT  470

Query  486  TGGATTCATAAAGTTCA  502
            |||||||||||||||||
Sbjct  471  TGGATTCATAAAGTTCA  487



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21863152497


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5