BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43990.2
Length=2637
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494600 jgi|Araly1|494600|fgenesh2_kg.8__416__AT5G43990.4 3212 0.0
Ahg338653 jgi|Araly1|338653|fgenesh1_pg.C_scaffold_2000752 1181 0.0
> Ahg494600 jgi|Araly1|494600|fgenesh2_kg.8__416__AT5G43990.4
Length=2576
Score = 3212 bits (1739), Expect = 0.0
Identities = 2130/2310 (92%), Gaps = 61/2310 (3%)
Strand=Plus/Plus
Query 208 AACGATGGCACCTAATCTGCATATCAAGAAAGCATTTATGGCTATGAGGGCTATGGGAAT 267
||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||
Sbjct 209 AACGATGGCACCTAATCCGCATATCAAGAAAGCATTTATGGCTATGAAGGCTCTGGGAAT 268
Query 268 AGAGGATGCGCGAGTGAAGCCGGTCTTGAAAAACCTTCTCGCCCTTTACGAGAAAAACTG 327
| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 269 AAAGGATGCGCAAGTGAAGCCGGTCTTGAAAAACCTTCTCTCCCTTTACGAGAAAAACTG 328
Query 328 GGAGTTAATTGCTGAAGACAATTACAGGGTTCTTGCTGATGCTATCTTCGATAGCCATGA 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 329 GGAGTTAATTGCTGAAGACAATTACAGGGTTCTTGCTGATGCTATCTTCGATAGCCAAGA 388
Query 388 AGATCAGGCTATTCAAGAAAGCGAAGAAAAGAAGGCAGACGAAGTTAAAGAGGATGAAGG 447
|| ||||| ||||||||||||| ||| |||||| || ||||||| ||||| |||||||||
Sbjct 389 AGCTCAGGATATTCAAGAAAGCAAAGGAAAGAAAGCTGACGAAGCTAAAGCGGATGAAGG 448
Query 448 CTGTGCCGCAGAAGTTGACAGAGGAAAGAAAAAGCTCCATGAATCTATCGAGGATGACGA 507
|||| || |||||||||||||||||||||| ||||||| ||||||||||||||| |||||
Sbjct 449 CTGTTCCACAGAAGTTGACAGAGGAAAGAAGAAGCTCCTTGAATCTATCGAGGAAGACGA 508
Query 508 AGATGTTA-TGGCTGAGTCTGATCGCCCTTTAAAGAGGCTGCGACGCAGAGGTGAAGGAG 566
|||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 509 TGATG-CACTGGCTGAGTCTGATCGCCCTTTAAAGAGGCTGCGGCGCAGAGGTGAAGGAG 567
Query 567 GCTCTGCTTTGGCAAGCCCTAGCTTGGGCAGTCCGACTTTAGAGGGA-CCTTC-AATTAA 624
||||||||||| |||||||||||||||| |||||||||||||| ||| ||||| | || |
Sbjct 568 GCTCTGCTTTGACAAGCCCTAGCTTGGGGAGTCCGACTTTAGA-GGAGCCTTCGACTT-A 625
Query 625 TGACGAAGAAAATGCTCCGATCCTATTGCCATATCATCCTGTACCAATTGAAAATGACCA 684
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 626 TGACGAAGAAAATGCTCCGATCCTATTGCCATATCATCCTGTACCAACTAAAAATGACCA 685
Query 685 TGATGCTGGTGAGCTCATTCTTACAAAAGTCGAGCCCATTACAAATATGCCTCTCAGTTC 744
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 686 TGATGCTGGTGAGCTCATTATTCCAAAAGTCGAGCCCATTACAAATATGGCTCTCAGTTC 745
Query 745 TA-T--TCCTGATTCAGTAGATAGAGGGGA--C-TC--TT-CCATGCTTGAGATAGACAA 795
|| | ||||||||||||||| ||| | | | || || ||||||||||||| || ||
Sbjct 746 TATTCATCCTGATTCAGTAGAGCGAGAGAACTCTTCAGTTCCCATGCTTGAGATGGAGAA 805
Query 796 ATCAAATGGACATGTGGAAGAGAAGGCTGGTGAAACAGTAAGTACTGCTGATGGTACTAC 855
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 806 AACAAATGGACATGTGGAAGAGGGGGCTGGTGAAACAGTAAGTACTGCTGATGGTACTAC 865
Query 856 CAATGACATTTCTCCTACAACTGTTGCGAGATTTAGTGATCACAAGCTAGCTGCAACCAT 915
|||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 866 CAATGATGTTTCTCCTACAACTGTTGGGAGATTTAGTGAGCACAAGCTAGCTGCAACCAC 925
Query 916 AGAAGAACC-TCCAGCACTTGAATTAGCTTCTTCTGCTTCAGGCGAGGTGAAGATTAATC 974
||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 926 AGAAGAACCAT-CAGCACTTGAATTAGCTTCTTCTGCTTCAGGCGAAGTGAAGATTAATC 984
Query 975 TTAGTTTTGCTCCTGCAACTGGAGGATCAAATCCCCATTTACCTTCTATGGAGGAACTAC 1034
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 985 TTAGTTTTGCTCCTGCAACTGGAGGATCAAATCTATATTTACCTTCTATGGAGGAACTTC 1044
Query 1035 GAAGAGCAATGGAGGAGAAGTGTCTCCGATCATACAAAATACTGGACCCCAACTTTTCTG 1094
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1045 GAAGAGCAATGGAGGAGAAGTGTCTTCGATCGTACAAAATACTGGACCCCAACTTTTCTG 1104
Query 1095 TGCTTGGTTTTATGAACGACATCTGTAGCTGCTACCTGGACCTGGCAACAAACGGGAGAG 1154
||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| ||
Sbjct 1105 TGCTTGGTTTTATGAACGACATCTGTAGCTGCTACATGGACTTGGCAACAAAGGGGAAAG 1164
Query 1155 ATTCAGCTAACCAATTGCCAAAAAACTTGCCGTTTGTCACAACGAACATTGATGCATTGA 1214
||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1165 ATTCAGCTAACCAGTTGCCAAAAAACTTGCCGTTTGTCACAGCAAACATTGATGCATTGA 1224
Query 1215 AGAAATCTGCAGCAAGGATGGCTTATACTTCTCAGGCCAGTAATGATGTTGTTGAAATCT 1274
|||||||||||||||||||||||| ||| | ||| | | | |
Sbjct 1225 AGAAATCTGCAGCAAGGATGGCTTTTAC-T-TCA---C-------A----G--G------ 1260
Query 1275 GCAGCAACGAACATATGCGTGATGCTGAAAACGGTGCAGTTGGTGATTCCATGGCTTTGG 1334
|||| || || ||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1261 GCAGTAATGATCATATGCGTGATGTTGAAAACGGTGCAGTTGGTGATTCCATGGGTTTGG 1320
Query 1335 TAGTTGTTCCTGAATGCCAACTTTCTGCAGATGAGTGGAGATTGATAAGCAGCGTCGGGG 1394
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1321 TAGTTGTTCCTGAATGCCAACTTTCTGCGGATGAGTGGAGATTGATAAGCAGCTTCGGGG 1380
Query 1395 ACATCAGTCTAGGGAAAGAAACTGTTGAGATTCCCTGGGTGAATGAGGTCAACGACAAAG 1454
|||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1381 ACATCACTCTAGGGAATGAAACTGTTGAGATTCCGTGGGTGAATGAGGTCAACGACAAGG 1440
Query 1455 TTCCTCCAGTTTTCCATTACATAGCCCAAAGTCTTGTGTATCAAGATGCTGCAGTGAAGT 1514
||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1441 TTCCTCCAGTTTTTCGTTACATAGTCCAAAGTCTTGTGTATCAAGATGCTGCAGTGAAGA 1500
Query 1515 TTTCGCTTGGGAATATCAGGGATGACCAATGCTGCTCCTCTTGCTGTGGAGATTGCTTGG 1574
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1501 TTTCGCTTGGGAATATCAGAGATGACCAATGCTGCTTCTCTTGCTGTGGAGATTGCTTGG 1560
Query 1575 CTCCGTCAATGGCATGCAGATGTGCAACTGCTTTTAATGGCTTTGCATACACAGTAGATG 1634
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1561 CTCCGTCAATGGCATGCAGTTGTGCAACTGCATTTAATGGCTTTGCATACACAGTAGATG 1620
Query 1635 GCCTCCTACAGGAAGATTTTCTGGAACAGTGTATCTCTGAGGCCCGTGATCCGCGGAAAC 1694
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 GCCTCCTACAAGAAGATTTTCTGGAACAGTGTATCTCTGAGGCCCGTGATCCGCGGAAAC 1680
Query 1695 AAATGTTACTGTATTGCAAAGAATGTCCTTTAGAGAAAGCCAAAAAAGAAGTAATCCTGG 1754
| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1681 ATATGGTACAGTATTGCAAAGAATGTCCTTTAGAGAAAGCCAAAAAAGAAGTAATTCTTC 1740
Query 1755 AACCGTGCAAAGGGCATCTAAAGAGAAAGGCCATTAAAGAATGTTGGAGCAAGTGTGGCT 1814
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1741 AACCGTGCAAGGGGCATCTAAAGAGAAAGGTCATTAAAGAATGTTGGAGCAAGTGTGGTT 1800
Query 1815 GCATGAAGAATTGTGGCAACCGAGTTGTCCAACAGGGCATTCACAACAAGCTGCAGGTGT 1874
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1801 GCATGAAGAAATGTGGCAACCGAGTTGTCCAACAGGGCATTCACAACAAGCTGCAAGTGT 1860
Query 1875 TTTTCACGCCCAATGGGAGAGGCTGGGGACTCAGAACTCTAGAAAAACTGCCTAAAGGAG 1934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 TTTTCACGCCCAATGGGAGAGGCTGGGGACTCAGAACTCTAGAAAAACTGCCTAAAGGAG 1920
Query 1935 CATTTGTCTGTGAGCTTGCTGGAGAGATATTGACCATTCCAGAGTTGTTCCAACGCATCT 1994
| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1921 CTTTTGTCTGTGAGTTTGCTGGAGAGATATTGACCCTTCCAGAGTTGTTCCAACGCAGCT 1980
Query 1995 CTGACAGGCCTACTTCTCCAGTAATATTGGATGCGTACTGGGGTTCTGAAGACATTTCAG 2054
|||| | || ||||||||| ||| |||||||||| |||||||||||||||||||||||||
Sbjct 1981 CTGAGATGCTTACTTCTCCGGTATTATTGGATGCATACTGGGGTTCTGAAGACATTTCAG 2040
Query 2055 GGGATGACAAAGCACTTTCTCTTGAAGGAACGCACTATGGAAATATTTCCAGGTTCATCA 2114
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 2041 GGGATGACAAAGCACTTTGTCTTGACGGAACGCACTATGGAAATATTTCCAGGTTCATCA 2100
Query 2115 ATCACAGATGCTTAGATGCAAATTTGATTGAGATCCCAGTTCATGCGGAGACTACTGATT 2174
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2101 ATCACAGATGCTTAGATGCAAATTTGATTGAGATCCCAGTTCATGTGGAGACTACTGATT 2160
Query 2175 CACACTACTATCATCTTGCATTCTTCACAACAAGAGAGATCGATGCTATGGAGGAACTTA 2234
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2161 TACACTACTATCATCTCGCATTCTTCACAACAAGAGAGATCGATGCTATGGAGGAACTTA 2220
Query 2235 CCTGGGATTATGGTGTCCCATTCAACCAAGATGTGTTTCCCACGAGTCCGTTCCATTGTC 2294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 CCTGGGATTATGGTGTCCCATTCAACCAAGATGTGTTTCCCACGAGTCCGTTCCATTGTC 2280
Query 2295 AATGTGGTAGCGACTTCTGCCGAGTCAGGAAGCAGATTAGCAAAGGCAAGAATGTGAAGA 2354
|||||||||||| ||||| || |||| |||||||| ||||||||||||||||||||||
Sbjct 2281 GATGTGGTAGCGAGTTCTGTCGGGTCATTAAGCAGATAAGCAAAGGCAAGAATGTGAAGA 2340
Query 2355 AGCGAGCATGAGAGAGAGCTTTACATTGGTAGGTTTTGAAGATATGTGGTGGGCGCAAAC 2414
|||||||||||||| |||||| ||||||| |||||||||||||||||||
Sbjct 2341 AGCGAGCATGAGAG----CTTTACTTTGGTAGTTTTTGAAGATATGTGGTGG-------- 2388
Query 2415 TCCTTTTTGTTGTGAATGAATTGGCaaaaaaaTTCCAATCGAAAAA-CGCTTTTTGTAAA 2473
| | |||||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 2389 T--T----GTTGTGAATGAATTGGCAAAAAAATTCCAATCGAAAAAACTCTTTTTGTCAA 2442
Query 2474 AAATTCCGACAATGCATATAAGCAAAGTCG 2503
|||| ||||||| |||||| ||||||||||
Sbjct 2443 AAAT-CCGACAAGGCATATCAGCAAAGTCG 2471
> Ahg338653 jgi|Araly1|338653|fgenesh1_pg.C_scaffold_2000752
Length=1122
Score = 1181 bits (639), Expect = 0.0
Identities = 762/819 (93%), Gaps = 17/819 (2%)
Strand=Plus/Plus
Query 456 CAGAAGTTGACAGAGGAAAGAAAAAGCTCCATGAATCTATCGAGGATGACGAAGATGTTA 515
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| |
Sbjct 38 CAGAAGTTGACAGAGGAAAGAAGAAGCTCCATGAATCTATCGAGGAAGACGATGATG-CA 96
Query 516 -TGGCTGAGTCTGATCGCCCTTTAAAGAGGCTGCGACGCAGAGGTGAAGGAGGCTCTGCT 574
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 97 CTGGCTGAGTCTGATCGCCCTTTAAAGAGGCTGCGGCGCAGAGGTGAAGGAGGCTCTGCT 156
Query 575 TTGGCAAGCCCTAGCTTGGGCAGTCCGACTTTAGAGGGA-CCTTC-AATTAATGACGAAG 632
||| |||||||||||||||| |||||||||||||| ||| ||||| | || |||||||||
Sbjct 157 TTGACAAGCCCTAGCTTGGGGAGTCCGACTTTAGA-GGAGCCTTCGACTT-ATGACGAAG 214
Query 633 AAAATGCTCCGATCCTATTGCCATATCATCCTGTACCAATTGAAAATGACCATGATGCTG 692
|||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 215 AAAATGCTCCAATCCTATTGCCATATCATCCTGTACCAACTAAAAATGACCATGATGCTG 274
Query 693 GTGAGCTCATTCTTACAAAAGTCGAGCCCATTACAAATATGCCTCTCAGTTCTA-T--TC 749
||||||||||| || ||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 275 GTGAGCTCATTATTCCAAAAGTCGAGCCCATTACAAATATGCCTCTCAGTTCTATTCATC 334
Query 750 CTGATTCAGTAGATAGAGGGGA--C-TC--TT-CCATGCTTGAGATAGACAAATCAAATG 803
||||||||||||| ||| | | | || || ||||||||||||| || ||| ||||||
Sbjct 335 CTGATTCAGTAGAGCGAGAGAACTCTTCAGTTCCCATGCTTGAGATGGAGAAAACAAATG 394
Query 804 GACATGTGGAAGAGAAGGCTGGTGAAACAGTAAGTACTGCTGATGGTACTACCAATGACA 863
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 GACATGTGGAAGAGGGGGCTGGTGAAACAGTAAGTACTGCTGATGGTACTACCAATGACG 454
Query 864 TTTCTCCTACAACTGTTGCGAGATTTAGTGATCACAAGCTAGCTGCAACCATAGAAGAAC 923
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 455 TTTCTCCTACAACTGTTGGGAGATTTAGTGAGCACAAGCTAGCTGCAACCATAGAAGAAC 514
Query 924 C-TCCAGCACTTGAATTAGCTTCTTCTGCTTCAGGCGAGGTGAAGATTAATCTTAGTTTT 982
| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 515 CAT-CAGCACTTGAATTAGCTTCTTCTGCTTCAGGCGAAGTGAAGATTAATCTTAGTTTT 573
Query 983 GCTCCTGCAACTGGAGGATCAAATCCCCATTTACCTTCTATGGAGGAACTACGAAGAGCA 1042
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 574 GCTCCTGCAACTGGAGGATCAAATCTATATTTACCTTCTATGGAGGAACTACGAAGAGCA 633
Query 1043 ATGGAGGAGAAGTGTCTCCGATCATACAAAATACTGGACCCCAACTTTTCTGTGCTTGGT 1102
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 634 ATGGAGGAGAAGTGTCTTCGATCGTACAAAATACTGGACCCCAACTTTTCTGTGCTTGGT 693
Query 1103 TTTATGAACGACATCTGTAGCTGCTACCTGGACCTGGCAACAAACGGGAGAGATTCAGCT 1162
||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||
Sbjct 694 TTTATGAACGACATCTGTAGCTGCTACATGGACCTGGCAACAAAGGGGAAAGATTCAGCT 753
Query 1163 AACCAATTGCCAAAAAACTTGCCGTTTGTCACAACGAACATTGATGCATTGAAGAAATCT 1222
||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 754 AACCAGTTGCCAAAAAACTTGCCGTTTGTCACAGCAAACATTGATGCATTGAAGAAATCT 813
Query 1223 GCAGCAAGGATGGCTTATACTTCTCAGGCCAGTAATGAT 1261
|||||||||||||||| |||||| |||| ||||||||||
Sbjct 814 GCAGCAAGGATGGCTTTTACTTCACAGGGCAGTAATGAT 852
Score = 78.7 bits (42), Expect = 2e-13
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 1286 CATATGCGTGATGCTGAAAACGGTGCAGTTGGTGATTCCATGGCT 1330
||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 853 CATATGCGTGATGTTGAAAACGGTGCAGTTGGTGATTCCATGGCT 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99453629695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5