BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G43990.2 Length=2637 Score E Sequences producing significant alignments: (Bits) Value Ahg494600 jgi|Araly1|494600|fgenesh2_kg.8__416__AT5G43990.4 3212 0.0 Ahg338653 jgi|Araly1|338653|fgenesh1_pg.C_scaffold_2000752 1181 0.0 > Ahg494600 jgi|Araly1|494600|fgenesh2_kg.8__416__AT5G43990.4 Length=2576 Score = 3212 bits (1739), Expect = 0.0 Identities = 2130/2310 (92%), Gaps = 61/2310 (3%) Strand=Plus/Plus Query 208 AACGATGGCACCTAATCTGCATATCAAGAAAGCATTTATGGCTATGAGGGCTATGGGAAT 267 ||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| Sbjct 209 AACGATGGCACCTAATCCGCATATCAAGAAAGCATTTATGGCTATGAAGGCTCTGGGAAT 268 Query 268 AGAGGATGCGCGAGTGAAGCCGGTCTTGAAAAACCTTCTCGCCCTTTACGAGAAAAACTG 327 | ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 269 AAAGGATGCGCAAGTGAAGCCGGTCTTGAAAAACCTTCTCTCCCTTTACGAGAAAAACTG 328 Query 328 GGAGTTAATTGCTGAAGACAATTACAGGGTTCTTGCTGATGCTATCTTCGATAGCCATGA 387 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 329 GGAGTTAATTGCTGAAGACAATTACAGGGTTCTTGCTGATGCTATCTTCGATAGCCAAGA 388 Query 388 AGATCAGGCTATTCAAGAAAGCGAAGAAAAGAAGGCAGACGAAGTTAAAGAGGATGAAGG 447 || ||||| ||||||||||||| ||| |||||| || ||||||| ||||| ||||||||| Sbjct 389 AGCTCAGGATATTCAAGAAAGCAAAGGAAAGAAAGCTGACGAAGCTAAAGCGGATGAAGG 448 Query 448 CTGTGCCGCAGAAGTTGACAGAGGAAAGAAAAAGCTCCATGAATCTATCGAGGATGACGA 507 |||| || |||||||||||||||||||||| ||||||| ||||||||||||||| ||||| Sbjct 449 CTGTTCCACAGAAGTTGACAGAGGAAAGAAGAAGCTCCTTGAATCTATCGAGGAAGACGA 508 Query 508 AGATGTTA-TGGCTGAGTCTGATCGCCCTTTAAAGAGGCTGCGACGCAGAGGTGAAGGAG 566 |||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 509 TGATG-CACTGGCTGAGTCTGATCGCCCTTTAAAGAGGCTGCGGCGCAGAGGTGAAGGAG 567 Query 567 GCTCTGCTTTGGCAAGCCCTAGCTTGGGCAGTCCGACTTTAGAGGGA-CCTTC-AATTAA 624 ||||||||||| |||||||||||||||| |||||||||||||| ||| ||||| | || | Sbjct 568 GCTCTGCTTTGACAAGCCCTAGCTTGGGGAGTCCGACTTTAGA-GGAGCCTTCGACTT-A 625 Query 625 TGACGAAGAAAATGCTCCGATCCTATTGCCATATCATCCTGTACCAATTGAAAATGACCA 684 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 626 TGACGAAGAAAATGCTCCGATCCTATTGCCATATCATCCTGTACCAACTAAAAATGACCA 685 Query 685 TGATGCTGGTGAGCTCATTCTTACAAAAGTCGAGCCCATTACAAATATGCCTCTCAGTTC 744 ||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||| Sbjct 686 TGATGCTGGTGAGCTCATTATTCCAAAAGTCGAGCCCATTACAAATATGGCTCTCAGTTC 745 Query 745 TA-T--TCCTGATTCAGTAGATAGAGGGGA--C-TC--TT-CCATGCTTGAGATAGACAA 795 || | ||||||||||||||| ||| | | | || || ||||||||||||| || || Sbjct 746 TATTCATCCTGATTCAGTAGAGCGAGAGAACTCTTCAGTTCCCATGCTTGAGATGGAGAA 805 Query 796 ATCAAATGGACATGTGGAAGAGAAGGCTGGTGAAACAGTAAGTACTGCTGATGGTACTAC 855 | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 806 AACAAATGGACATGTGGAAGAGGGGGCTGGTGAAACAGTAAGTACTGCTGATGGTACTAC 865 Query 856 CAATGACATTTCTCCTACAACTGTTGCGAGATTTAGTGATCACAAGCTAGCTGCAACCAT 915 |||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 866 CAATGATGTTTCTCCTACAACTGTTGGGAGATTTAGTGAGCACAAGCTAGCTGCAACCAC 925 Query 916 AGAAGAACC-TCCAGCACTTGAATTAGCTTCTTCTGCTTCAGGCGAGGTGAAGATTAATC 974 ||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 926 AGAAGAACCAT-CAGCACTTGAATTAGCTTCTTCTGCTTCAGGCGAAGTGAAGATTAATC 984 Query 975 TTAGTTTTGCTCCTGCAACTGGAGGATCAAATCCCCATTTACCTTCTATGGAGGAACTAC 1034 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 985 TTAGTTTTGCTCCTGCAACTGGAGGATCAAATCTATATTTACCTTCTATGGAGGAACTTC 1044 Query 1035 GAAGAGCAATGGAGGAGAAGTGTCTCCGATCATACAAAATACTGGACCCCAACTTTTCTG 1094 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1045 GAAGAGCAATGGAGGAGAAGTGTCTTCGATCGTACAAAATACTGGACCCCAACTTTTCTG 1104 Query 1095 TGCTTGGTTTTATGAACGACATCTGTAGCTGCTACCTGGACCTGGCAACAAACGGGAGAG 1154 ||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| || Sbjct 1105 TGCTTGGTTTTATGAACGACATCTGTAGCTGCTACATGGACTTGGCAACAAAGGGGAAAG 1164 Query 1155 ATTCAGCTAACCAATTGCCAAAAAACTTGCCGTTTGTCACAACGAACATTGATGCATTGA 1214 ||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 1165 ATTCAGCTAACCAGTTGCCAAAAAACTTGCCGTTTGTCACAGCAAACATTGATGCATTGA 1224 Query 1215 AGAAATCTGCAGCAAGGATGGCTTATACTTCTCAGGCCAGTAATGATGTTGTTGAAATCT 1274 |||||||||||||||||||||||| ||| | ||| | | | | Sbjct 1225 AGAAATCTGCAGCAAGGATGGCTTTTAC-T-TCA---C-------A----G--G------ 1260 Query 1275 GCAGCAACGAACATATGCGTGATGCTGAAAACGGTGCAGTTGGTGATTCCATGGCTTTGG 1334 |||| || || ||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1261 GCAGTAATGATCATATGCGTGATGTTGAAAACGGTGCAGTTGGTGATTCCATGGGTTTGG 1320 Query 1335 TAGTTGTTCCTGAATGCCAACTTTCTGCAGATGAGTGGAGATTGATAAGCAGCGTCGGGG 1394 |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 1321 TAGTTGTTCCTGAATGCCAACTTTCTGCGGATGAGTGGAGATTGATAAGCAGCTTCGGGG 1380 Query 1395 ACATCAGTCTAGGGAAAGAAACTGTTGAGATTCCCTGGGTGAATGAGGTCAACGACAAAG 1454 |||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||| | Sbjct 1381 ACATCACTCTAGGGAATGAAACTGTTGAGATTCCGTGGGTGAATGAGGTCAACGACAAGG 1440 Query 1455 TTCCTCCAGTTTTCCATTACATAGCCCAAAGTCTTGTGTATCAAGATGCTGCAGTGAAGT 1514 ||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||| Sbjct 1441 TTCCTCCAGTTTTTCGTTACATAGTCCAAAGTCTTGTGTATCAAGATGCTGCAGTGAAGA 1500 Query 1515 TTTCGCTTGGGAATATCAGGGATGACCAATGCTGCTCCTCTTGCTGTGGAGATTGCTTGG 1574 ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 1501 TTTCGCTTGGGAATATCAGAGATGACCAATGCTGCTTCTCTTGCTGTGGAGATTGCTTGG 1560 Query 1575 CTCCGTCAATGGCATGCAGATGTGCAACTGCTTTTAATGGCTTTGCATACACAGTAGATG 1634 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 1561 CTCCGTCAATGGCATGCAGTTGTGCAACTGCATTTAATGGCTTTGCATACACAGTAGATG 1620 Query 1635 GCCTCCTACAGGAAGATTTTCTGGAACAGTGTATCTCTGAGGCCCGTGATCCGCGGAAAC 1694 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1621 GCCTCCTACAAGAAGATTTTCTGGAACAGTGTATCTCTGAGGCCCGTGATCCGCGGAAAC 1680 Query 1695 AAATGTTACTGTATTGCAAAGAATGTCCTTTAGAGAAAGCCAAAAAAGAAGTAATCCTGG 1754 | ||| ||| ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1681 ATATGGTACAGTATTGCAAAGAATGTCCTTTAGAGAAAGCCAAAAAAGAAGTAATTCTTC 1740 Query 1755 AACCGTGCAAAGGGCATCTAAAGAGAAAGGCCATTAAAGAATGTTGGAGCAAGTGTGGCT 1814 |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 1741 AACCGTGCAAGGGGCATCTAAAGAGAAAGGTCATTAAAGAATGTTGGAGCAAGTGTGGTT 1800 Query 1815 GCATGAAGAATTGTGGCAACCGAGTTGTCCAACAGGGCATTCACAACAAGCTGCAGGTGT 1874 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1801 GCATGAAGAAATGTGGCAACCGAGTTGTCCAACAGGGCATTCACAACAAGCTGCAAGTGT 1860 Query 1875 TTTTCACGCCCAATGGGAGAGGCTGGGGACTCAGAACTCTAGAAAAACTGCCTAAAGGAG 1934 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1861 TTTTCACGCCCAATGGGAGAGGCTGGGGACTCAGAACTCTAGAAAAACTGCCTAAAGGAG 1920 Query 1935 CATTTGTCTGTGAGCTTGCTGGAGAGATATTGACCATTCCAGAGTTGTTCCAACGCATCT 1994 | |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| || Sbjct 1921 CTTTTGTCTGTGAGTTTGCTGGAGAGATATTGACCCTTCCAGAGTTGTTCCAACGCAGCT 1980 Query 1995 CTGACAGGCCTACTTCTCCAGTAATATTGGATGCGTACTGGGGTTCTGAAGACATTTCAG 2054 |||| | || ||||||||| ||| |||||||||| ||||||||||||||||||||||||| Sbjct 1981 CTGAGATGCTTACTTCTCCGGTATTATTGGATGCATACTGGGGTTCTGAAGACATTTCAG 2040 Query 2055 GGGATGACAAAGCACTTTCTCTTGAAGGAACGCACTATGGAAATATTTCCAGGTTCATCA 2114 |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 2041 GGGATGACAAAGCACTTTGTCTTGACGGAACGCACTATGGAAATATTTCCAGGTTCATCA 2100 Query 2115 ATCACAGATGCTTAGATGCAAATTTGATTGAGATCCCAGTTCATGCGGAGACTACTGATT 2174 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2101 ATCACAGATGCTTAGATGCAAATTTGATTGAGATCCCAGTTCATGTGGAGACTACTGATT 2160 Query 2175 CACACTACTATCATCTTGCATTCTTCACAACAAGAGAGATCGATGCTATGGAGGAACTTA 2234 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2161 TACACTACTATCATCTCGCATTCTTCACAACAAGAGAGATCGATGCTATGGAGGAACTTA 2220 Query 2235 CCTGGGATTATGGTGTCCCATTCAACCAAGATGTGTTTCCCACGAGTCCGTTCCATTGTC 2294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2221 CCTGGGATTATGGTGTCCCATTCAACCAAGATGTGTTTCCCACGAGTCCGTTCCATTGTC 2280 Query 2295 AATGTGGTAGCGACTTCTGCCGAGTCAGGAAGCAGATTAGCAAAGGCAAGAATGTGAAGA 2354 |||||||||||| ||||| || |||| |||||||| |||||||||||||||||||||| Sbjct 2281 GATGTGGTAGCGAGTTCTGTCGGGTCATTAAGCAGATAAGCAAAGGCAAGAATGTGAAGA 2340 Query 2355 AGCGAGCATGAGAGAGAGCTTTACATTGGTAGGTTTTGAAGATATGTGGTGGGCGCAAAC 2414 |||||||||||||| |||||| ||||||| ||||||||||||||||||| Sbjct 2341 AGCGAGCATGAGAG----CTTTACTTTGGTAGTTTTTGAAGATATGTGGTGG-------- 2388 Query 2415 TCCTTTTTGTTGTGAATGAATTGGCaaaaaaaTTCCAATCGAAAAA-CGCTTTTTGTAAA 2473 | | |||||||||||||||||||||||||||||||||||||| | |||||||| || Sbjct 2389 T--T----GTTGTGAATGAATTGGCAAAAAAATTCCAATCGAAAAAACTCTTTTTGTCAA 2442 Query 2474 AAATTCCGACAATGCATATAAGCAAAGTCG 2503 |||| ||||||| |||||| |||||||||| Sbjct 2443 AAAT-CCGACAAGGCATATCAGCAAAGTCG 2471 > Ahg338653 jgi|Araly1|338653|fgenesh1_pg.C_scaffold_2000752 Length=1122 Score = 1181 bits (639), Expect = 0.0 Identities = 762/819 (93%), Gaps = 17/819 (2%) Strand=Plus/Plus Query 456 CAGAAGTTGACAGAGGAAAGAAAAAGCTCCATGAATCTATCGAGGATGACGAAGATGTTA 515 |||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| | Sbjct 38 CAGAAGTTGACAGAGGAAAGAAGAAGCTCCATGAATCTATCGAGGAAGACGATGATG-CA 96 Query 516 -TGGCTGAGTCTGATCGCCCTTTAAAGAGGCTGCGACGCAGAGGTGAAGGAGGCTCTGCT 574 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 97 CTGGCTGAGTCTGATCGCCCTTTAAAGAGGCTGCGGCGCAGAGGTGAAGGAGGCTCTGCT 156 Query 575 TTGGCAAGCCCTAGCTTGGGCAGTCCGACTTTAGAGGGA-CCTTC-AATTAATGACGAAG 632 ||| |||||||||||||||| |||||||||||||| ||| ||||| | || ||||||||| Sbjct 157 TTGACAAGCCCTAGCTTGGGGAGTCCGACTTTAGA-GGAGCCTTCGACTT-ATGACGAAG 214 Query 633 AAAATGCTCCGATCCTATTGCCATATCATCCTGTACCAATTGAAAATGACCATGATGCTG 692 |||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 215 AAAATGCTCCAATCCTATTGCCATATCATCCTGTACCAACTAAAAATGACCATGATGCTG 274 Query 693 GTGAGCTCATTCTTACAAAAGTCGAGCCCATTACAAATATGCCTCTCAGTTCTA-T--TC 749 ||||||||||| || ||||||||||||||||||||||||||||||||||||||| | || Sbjct 275 GTGAGCTCATTATTCCAAAAGTCGAGCCCATTACAAATATGCCTCTCAGTTCTATTCATC 334 Query 750 CTGATTCAGTAGATAGAGGGGA--C-TC--TT-CCATGCTTGAGATAGACAAATCAAATG 803 ||||||||||||| ||| | | | || || ||||||||||||| || ||| |||||| Sbjct 335 CTGATTCAGTAGAGCGAGAGAACTCTTCAGTTCCCATGCTTGAGATGGAGAAAACAAATG 394 Query 804 GACATGTGGAAGAGAAGGCTGGTGAAACAGTAAGTACTGCTGATGGTACTACCAATGACA 863 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 395 GACATGTGGAAGAGGGGGCTGGTGAAACAGTAAGTACTGCTGATGGTACTACCAATGACG 454 Query 864 TTTCTCCTACAACTGTTGCGAGATTTAGTGATCACAAGCTAGCTGCAACCATAGAAGAAC 923 |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 455 TTTCTCCTACAACTGTTGGGAGATTTAGTGAGCACAAGCTAGCTGCAACCATAGAAGAAC 514 Query 924 C-TCCAGCACTTGAATTAGCTTCTTCTGCTTCAGGCGAGGTGAAGATTAATCTTAGTTTT 982 | | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 515 CAT-CAGCACTTGAATTAGCTTCTTCTGCTTCAGGCGAAGTGAAGATTAATCTTAGTTTT 573 Query 983 GCTCCTGCAACTGGAGGATCAAATCCCCATTTACCTTCTATGGAGGAACTACGAAGAGCA 1042 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 574 GCTCCTGCAACTGGAGGATCAAATCTATATTTACCTTCTATGGAGGAACTACGAAGAGCA 633 Query 1043 ATGGAGGAGAAGTGTCTCCGATCATACAAAATACTGGACCCCAACTTTTCTGTGCTTGGT 1102 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 634 ATGGAGGAGAAGTGTCTTCGATCGTACAAAATACTGGACCCCAACTTTTCTGTGCTTGGT 693 Query 1103 TTTATGAACGACATCTGTAGCTGCTACCTGGACCTGGCAACAAACGGGAGAGATTCAGCT 1162 ||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||| Sbjct 694 TTTATGAACGACATCTGTAGCTGCTACATGGACCTGGCAACAAAGGGGAAAGATTCAGCT 753 Query 1163 AACCAATTGCCAAAAAACTTGCCGTTTGTCACAACGAACATTGATGCATTGAAGAAATCT 1222 ||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 754 AACCAGTTGCCAAAAAACTTGCCGTTTGTCACAGCAAACATTGATGCATTGAAGAAATCT 813 Query 1223 GCAGCAAGGATGGCTTATACTTCTCAGGCCAGTAATGAT 1261 |||||||||||||||| |||||| |||| |||||||||| Sbjct 814 GCAGCAAGGATGGCTTTTACTTCACAGGGCAGTAATGAT 852 Score = 78.7 bits (42), Expect = 2e-13 Identities = 44/45 (98%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 1286 CATATGCGTGATGCTGAAAACGGTGCAGTTGGTGATTCCATGGCT 1330 ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 853 CATATGCGTGATGTTGAAAACGGTGCAGTTGGTGATTCCATGGCT 897 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 99453629695 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5