BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44000.1
Length=1370
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494596 jgi|Araly1|494596|fgenesh2_kg.8__412__AT5G44000.1 1881 0.0
Ahg356687 jgi|Araly1|356687|fgenesh1_pg.C_scaffold_8000474 1229 0.0
Ahg907895 jgi|Araly1|907895|Al_scaffold_0002_976 660 0.0
Ahg338653 jgi|Araly1|338653|fgenesh1_pg.C_scaffold_2000752 322 4e-87
> Ahg494596 jgi|Araly1|494596|fgenesh2_kg.8__412__AT5G44000.1
Length=1233
Score = 1881 bits (1018), Expect = 0.0
Identities = 1162/1233 (94%), Gaps = 3/1233 (0%)
Strand=Plus/Plus
Query 24 TCAGCCATGGCCAATTGCTTCGCGCCACAATTAACCTTCCCGTCCTTCTCGCCACGCCAT 83
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1 TCAGCCATGGCCAATTGCTTCGCGCCACAATTAACCTTCCCGTCATTCACGCCACGCCAC 60
Query 84 TTCAGCCCTAGAATGTCGCACCAATCACCAAAACCAAGCACGAGCACCACC-AC--AAGC 140
||||||||||||||||| ||||||||||||||||||||||| ||||||||| || ||||
Sbjct 61 TTCAGCCCTAGAATGTCACACCAATCACCAAAACCAAGCACAAGCACCACCAACAAAAGC 120
Query 141 ATCTTCACCTCCGCCACAAAGCTACTATGGGGACCATCTCTTCCTCCAGGTCTACTTATC 200
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 ATCTTCACCTCCGCCACAAAGCTACTTTGGGGACCATCTCTTCCTCCAGGTCTACTTATC 180
Query 201 TCCACCGCTCGAACAGCTTGGACAACCGTGTGGCAGCTCATGATGACCCAACTCGCTCCA 260
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 181 TCCACCGCTCGAACAGCTTGGACCACCGTCTGGCAGCTCATGATGACCCAACTCGCTCCA 240
Query 261 TCCGATTCATCCGGGTCATACACCCGACCCACTTCAAAATTTCGTCTCGACCCGACCCAA 320
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 TCCGATTCATCCGGGTCATACACCCGACCCACTTCCAAATTTCGTCTCGACCCGACCCAA 300
Query 321 TTCACTTCCGCTGCTTCCTCCGAGCTCCACCTCTACGTTGGTCTTCCTTGCCCTTGGGCT 380
||| |||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 301 TTCCCTTCCGCTGCTTCCTCGGAGCTCCATCTCTACGTTGGTCTTCCTTGTCCTTGGGCT 360
Query 381 CACCGAACCCTAATTGTCCGTGCTCTCAAGGGTTTAAACGACGCCGTTCCGGTCTCAATC 440
|| ||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||
Sbjct 361 CATCGAACCCTAATTGTCCGAGCTCTCAAGGGTTTAAACGACGCCGTTACAGTCTCAATC 420
Query 441 GCATCACCTGGTCAAGATGGATCATGGGAATTCAAGAATAATAATATCCCAATCAAGGAT 500
||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 421 GCATCGCCTGGTCAAGATGGATCATGGGAATTCAAGGATAACAATATCCCAATCAAGGAT 480
Query 501 AAGGATAAACTTATCCCGAGTTTGGATAAAGCAAACCGGTGCCGGAATCTTAAGGAAGTG 560
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 AAGGATAAACTTATCCCGAGTTTGGATAAGGCAAACCGGTGCCGGAATCTTAAGGAAGTG 540
Query 561 TACAAATCTAGAAGTGGAGGTTACGATGGGAGGTGTACTGTTCCAATGCTGTGGGATTTA 620
|||||||| |||| ||||||||||| || |||||||| ||||||||||||||||||| |
Sbjct 541 TACAAATCAAGAACCGGAGGTTACGACGGTAGGTGTACCGTTCCAATGCTGTGGGATTCA 600
Query 621 AGGAAGAAAGATGTTGTTTGTAACGAAAGCTATGATATTATCGAGTTCTTCAATTCAGGT 680
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 601 AGGAAGAAAGAAGTTGTTTGTAACGAAAGCTACGATATTATCGAGTTCTTCAATTCGGGT 660
Query 681 TTAAACAAATTGGCCCGAAATGATAACTTGGATCTCTCGCCACCAGAGTTGAAAGAGATG 740
|||||| ||||||| ||||| | | | || ||||| ||||||||||||||||||||||||
Sbjct 661 TTAAACGAATTGGCACGAAACGCTGATTTAGATCTTTCGCCACCAGAGTTGAAAGAGATG 720
Query 741 ATACAAGGTTGGAATCAGATTGTGTATCCTAAAGTTAACAATGGCGTTTACAGGTGCGGG 800
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATCCAAGATTGGAATCAGATTGTGTATCCTAAAGTTAACAATGGCGTTTACAGGTGCGGG 780
Query 801 TTTGCGCAGAGCCAAGAAGCGTATGATGGAGCAGTGAATGAACTCTTTAGTACCTTAGAT 860
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 781 TTTGCGCAGAGCCAAGAAGCGTATGATGGAGCAGTGAATGAACTCTTTAGTACCTTGGAT 840
Query 861 GAGATTGAGGATCACTTGGGTAGTAATAGATACTTGTGTGGAGAAAGGTTGACATTGGCT 920
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 841 GAGATTGAGGATCACTTGGGTAGTAATAGATACTTGTGTGGAGAAAGGTTAACCTTGGCG 900
Query 921 GATGTATGTCTGTTCACAACTCTGATTCGTTTTGATTCGGTTTACAACATTCTATTCAAA 980
||||| ||||| || ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 901 GATGTGTGTCTCTTTACAACTCTGATTCGTTTTGATCCGGTTTACAACATTCTATTCAAA 960
Query 981 TGCACCAAGAAGAAGCTTGTTGAATACCCAAATCTCTATGGCTATTTGCGCGAGATTTAC 1040
|||||||||||||| |||||||| || || |||||||||||||||||||| || || |||
Sbjct 961 TGCACCAAGAAGAAACTTGTTGAGTATCCGAATCTCTATGGCTATTTGCGGGACATGTAC 1020
Query 1041 CAGATTCCTGGTGTTGCGGCTACTTGTGATATTTCGGCTATAATGGATGGCTACTACAAG 1100
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1021 CAGATTCCTGGTGTTGCGGCTACTTGTGATATTTCGGCTATAATGGATGGGTACTACAAA 1080
Query 1101 ACGCTGTTTCCGCTAAACGCTAGTGGAATTCAACCGGCCATTTCTTCATCTGGCGATCAA 1160
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1081 ACGCTGTTTCCGCTAAACGCAAGTGGAATTCAACCGGCTATTTCTTCATCTGGCGATCAA 1140
Query 1161 GATTCTCTCTGGAGACCTCATAACCGAGACTTGGTAGGTAAAGCCATTGAAGCACAGCTT 1220
|| ||||||| |||||||||||||||||||||||| ||||||||| |||||||||| ||
Sbjct 1141 GAATCTCTCTTGAGACCTCATAACCGAGACTTGGTGGGTAAAGCCGTTGAAGCACAACTC 1200
Query 1221 TCGGTTTAAGCGTAGAAAACTGTACATAACTCA 1253
| ||||||||||||||||||||||||||||||
Sbjct 1201 GCTGTTTAAGCGTAGAAAACTGTACATAACTCA 1233
> Ahg356687 jgi|Araly1|356687|fgenesh1_pg.C_scaffold_8000474
Length=1752
Score = 1229 bits (665), Expect = 0.0
Identities = 763/812 (94%), Gaps = 0/812 (0%)
Strand=Plus/Plus
Query 408 AAGGGTTTAAACGACGCCGTTCCGGTCTCAATCGCATCACCTGGTCAAGATGGATCATGG 467
||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 931 AAGGGTTTAAACGACGCCGTTACAGTCTCAATCGCATCGCCTGGTCAAGATGGATCATGG 990
Query 468 GAATTCAAGAATAATAATATCCCAATCAAGGATAAGGATAAACTTATCCCGAGTTTGGAT 527
||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 991 GAATTCAAGGATAACAATATCCCAATCAAGGATAAGGATCAACTTATCCCGAGTTTGGAT 1050
Query 528 AAAGCAAACCGGTGCCGGAATCTTAAGGAAGTGTACAAATCTAGAAGTGGAGGTTACGAT 587
|| |||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1051 AAGGCAAACCGATGCCGGAATCTTAAGGAAGTGTACAAATCAAGAACCGGAGGTTACGAT 1110
Query 588 GGGAGGTGTACTGTTCCAATGCTGTGGGATTTAAGGAAGAAAGATGTTGTTTGTAACGAA 647
||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1111 GGGAGGTGTACCGTTCCAATGCTGTGGGATTCAAGGAAGAAAGAAGTTGTTTGTAACGAA 1170
Query 648 AGCTATGATATTATCGAGTTCTTCAATTCAGGTTTAAACAAATTGGCCCGAAATGATAAC 707
||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||| | | |
Sbjct 1171 AGCTACGATATTATCGAGTTCTTCAATTCGGGTTTAAACGAATTGGCACGAAACGCTGAT 1230
Query 708 TTGGATCTCTCGCCACCAGAGTTGAAAGAGATGATACAAGGTTGGAATCAGATTGTGTAT 767
|| ||||| |||||||||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 1231 TTAGATCTTTCGCCACCAGAGTTGAAAGAGAAGATCCAAGATTGGAATCAGATTGTGTAT 1290
Query 768 CCTAAAGTTAACAATGGCGTTTACAGGTGCGGGTTTGCGCAGAGCCAAGAAGCGTATGAT 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 CCTAAAGTTAACAATGGCGTTTACAGGTGCGGGTTTGCGCAGAGCCAAGAAGCGTATGAT 1350
Query 828 GGAGCAGTGAATGAACTCTTTAGTACCTTAGATGAGATTGAGGATCACTTGGGTAGTAAT 887
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1351 GGAGCAGTGAATGAACTCTTTAGTACCTTAGATAAGATTGAGGATCACTTGGGTAGTAAT 1410
Query 888 AGATACTTGTGTGGAGAAAGGTTGACATTGGCTGATGTATGTCTGTTCACAACTCTGATT 947
||||||||||||||||||||||| || ||||| ||||| ||||| || ||||||||||||
Sbjct 1411 AGATACTTGTGTGGAGAAAGGTTAACCTTGGCGGATGTGTGTCTCTTTACAACTCTGATT 1470
Query 948 CGTTTTGATTCGGTTTACAACATTCTATTCAAATGCACCAAGAAGAAGCTTGTTGAATAC 1007
||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||| |||
Sbjct 1471 CGTTTTGATCCGGTTTACAACAATCTATTCAAGTGCACCAAGAAGAAGCTTGTTGAGTAC 1530
Query 1008 CCAAATCTCTATGGCTATTTGCGCGAGATTTACCAGATTCCTGGTGTTGCGGCTACTTGT 1067
|| |||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 1531 CCGAATCTCTATGGCTATTTGCGGGACATGTACCAGATTCCTGGTGTTGCGGCTACTTGT 1590
Query 1068 GATATTTCGGCTATAATGGATGGCTACTACAAGACGCTGTTTCCGCTAAACGCTAGTGGA 1127
||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 1591 GATATTTCGGCTATAATGGATGGGTACTACAAAACGCTGTTTCCGCTAAACGCAAGTGGA 1650
Query 1128 ATTCAACCGGCCATTTCTTCATCTGGCGATCAAGATTCTCTCTGGAGACCTCATAACCGA 1187
||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1651 ATTCAACCGGCTATTTCTTCATCTGGCGATCAAGAATCTCTCTTGAGACCTCATAACCGA 1710
Query 1188 GACTTGGTAGGTAAAGCCATTGAAGCACAGCT 1219
|||||||| |||||||||||||||||||||||
Sbjct 1711 GACTTGGTGGGTAAAGCCATTGAAGCACAGCT 1742
> Ahg907895 jgi|Araly1|907895|Al_scaffold_0002_976
Length=513
Score = 660 bits (357), Expect = 0.0
Identities = 411/438 (94%), Gaps = 0/438 (0%)
Strand=Plus/Plus
Query 792 AGGTGCGGGTTTGCGCAGAGCCAAGAAGCGTATGATGGAGCAGTGAATGAACTCTTTAGT 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 AGGTGCGGGTTTGCGCAGAGCCAAGAAGCGTATGATGGAGCAGTGAATGAACTCTTTAGT 135
Query 852 ACCTTAGATGAGATTGAGGATCACTTGGGTAGTAATAGATACTTGTGTGGAGAAAGGTTG 911
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 ACCTTAGATAAGATCGAGGATCACTTGGGTAGTAATAGATACTTGTGTGGAGAAAGGTTA 195
Query 912 ACATTGGCTGATGTATGTCTGTTCACAACTCTGATTCGTTTTGATTCGGTTTACAACATT 971
|| ||||| ||||| ||||| || ||||||||||||||||||||| |||||||||||| |
Sbjct 196 ACCTTGGCGGATGTGTGTCTCTTTACAACTCTGATTCGTTTTGATCCGGTTTACAACAAT 255
Query 972 CTATTCAAATGCACCAAGAAGAAGCTTGTTGAATACCCAAATCTCTATGGCTATTTGCGC 1031
|||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 256 CTATTCAAGTGCACCAAGAAGAAGCTTGTTGAGTACCCGAATCTCTATGGCTATTTGCGG 315
Query 1032 GAGATTTACCAGATTCCTGGTGTTGCGGCTACTTGTGATATTTCGGCTATAATGGATGGC 1091
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GACATGTACCAGATTCCTGGTGTTGCGGCTACTTGTGATATTTCGGCTATAATGGATGGG 375
Query 1092 TACTACAAGACGCTGTTTCCGCTAAACGCTAGTGGAATTCAACCGGCCATTTCTTCATCT 1151
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 376 TACTACAAAACGCTGTTTCCGCTAAACGCAAGTGGAATTCAACCGGCTATTTCTTCATCT 435
Query 1152 GGCGATCAAGATTCTCTCTGGAGACCTCATAACCGAGACTTGGTAGGTAAAGCCATTGAA 1211
||||||||||| ||||||| |||||||||||||||||||||||| ||| ||||||| |||
Sbjct 436 GGCGATCAAGAATCTCTCTTGAGACCTCATAACCGAGACTTGGTGGGTGAAGCCATGGAA 495
Query 1212 GCACAGCTTTCGGTTTAA 1229
||||| ||| ||||||||
Sbjct 496 GCACAACTTGCGGTTTAA 513
> Ahg338653 jgi|Araly1|338653|fgenesh1_pg.C_scaffold_2000752
Length=1122
Score = 322 bits (174), Expect = 4e-87
Identities = 191/199 (96%), Gaps = 1/199 (1%)
Strand=Plus/Minus
Query 20 aaaT-TCAGCCATGGCCAATTGCTTCGCGCCACAATTAACCTTCCCGTCCTTCTCGCCAC 78
|||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1093 AAATCTCAGCCATGGCCAATTGCTTCGCGCCACAATTAACCTTCCCGGCCTTCACGCCAC 1034
Query 79 GCCATTTCAGCCCTAGAATGTCGCACCAATCACCAAAACCAAGCACGAGCACCACCACAA 138
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1033 GCCACCTCAGCCCTAGAATGTCACACCAATCACCAAAACCAAGCACGAGCACCACCACCA 974
Query 139 GCATCTTCACCTCCGCCACAAAGCTACTATGGGGACCATCTCTTCCTCCAGGTCTACTTA 198
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 GCATATTCACCTCCGCCACAAAGCTACTATGGGGACCATCTCTTCCTCCAGGTCTACTTA 914
Query 199 TCTCCACCGCTCGAACAGC 217
|||||||||||||||||||
Sbjct 913 TCTCCACCGCTCGAACAGC 895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51275323365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5