BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G44000.1 Length=1370 Score E Sequences producing significant alignments: (Bits) Value Ahg494596 jgi|Araly1|494596|fgenesh2_kg.8__412__AT5G44000.1 1881 0.0 Ahg356687 jgi|Araly1|356687|fgenesh1_pg.C_scaffold_8000474 1229 0.0 Ahg907895 jgi|Araly1|907895|Al_scaffold_0002_976 660 0.0 Ahg338653 jgi|Araly1|338653|fgenesh1_pg.C_scaffold_2000752 322 4e-87 > Ahg494596 jgi|Araly1|494596|fgenesh2_kg.8__412__AT5G44000.1 Length=1233 Score = 1881 bits (1018), Expect = 0.0 Identities = 1162/1233 (94%), Gaps = 3/1233 (0%) Strand=Plus/Plus Query 24 TCAGCCATGGCCAATTGCTTCGCGCCACAATTAACCTTCCCGTCCTTCTCGCCACGCCAT 83 |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 1 TCAGCCATGGCCAATTGCTTCGCGCCACAATTAACCTTCCCGTCATTCACGCCACGCCAC 60 Query 84 TTCAGCCCTAGAATGTCGCACCAATCACCAAAACCAAGCACGAGCACCACC-AC--AAGC 140 ||||||||||||||||| ||||||||||||||||||||||| ||||||||| || |||| Sbjct 61 TTCAGCCCTAGAATGTCACACCAATCACCAAAACCAAGCACAAGCACCACCAACAAAAGC 120 Query 141 ATCTTCACCTCCGCCACAAAGCTACTATGGGGACCATCTCTTCCTCCAGGTCTACTTATC 200 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 121 ATCTTCACCTCCGCCACAAAGCTACTTTGGGGACCATCTCTTCCTCCAGGTCTACTTATC 180 Query 201 TCCACCGCTCGAACAGCTTGGACAACCGTGTGGCAGCTCATGATGACCCAACTCGCTCCA 260 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 181 TCCACCGCTCGAACAGCTTGGACCACCGTCTGGCAGCTCATGATGACCCAACTCGCTCCA 240 Query 261 TCCGATTCATCCGGGTCATACACCCGACCCACTTCAAAATTTCGTCTCGACCCGACCCAA 320 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 241 TCCGATTCATCCGGGTCATACACCCGACCCACTTCCAAATTTCGTCTCGACCCGACCCAA 300 Query 321 TTCACTTCCGCTGCTTCCTCCGAGCTCCACCTCTACGTTGGTCTTCCTTGCCCTTGGGCT 380 ||| |||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| Sbjct 301 TTCCCTTCCGCTGCTTCCTCGGAGCTCCATCTCTACGTTGGTCTTCCTTGTCCTTGGGCT 360 Query 381 CACCGAACCCTAATTGTCCGTGCTCTCAAGGGTTTAAACGACGCCGTTCCGGTCTCAATC 440 || ||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||| Sbjct 361 CATCGAACCCTAATTGTCCGAGCTCTCAAGGGTTTAAACGACGCCGTTACAGTCTCAATC 420 Query 441 GCATCACCTGGTCAAGATGGATCATGGGAATTCAAGAATAATAATATCCCAATCAAGGAT 500 ||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 421 GCATCGCCTGGTCAAGATGGATCATGGGAATTCAAGGATAACAATATCCCAATCAAGGAT 480 Query 501 AAGGATAAACTTATCCCGAGTTTGGATAAAGCAAACCGGTGCCGGAATCTTAAGGAAGTG 560 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 481 AAGGATAAACTTATCCCGAGTTTGGATAAGGCAAACCGGTGCCGGAATCTTAAGGAAGTG 540 Query 561 TACAAATCTAGAAGTGGAGGTTACGATGGGAGGTGTACTGTTCCAATGCTGTGGGATTTA 620 |||||||| |||| ||||||||||| || |||||||| ||||||||||||||||||| | Sbjct 541 TACAAATCAAGAACCGGAGGTTACGACGGTAGGTGTACCGTTCCAATGCTGTGGGATTCA 600 Query 621 AGGAAGAAAGATGTTGTTTGTAACGAAAGCTATGATATTATCGAGTTCTTCAATTCAGGT 680 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 601 AGGAAGAAAGAAGTTGTTTGTAACGAAAGCTACGATATTATCGAGTTCTTCAATTCGGGT 660 Query 681 TTAAACAAATTGGCCCGAAATGATAACTTGGATCTCTCGCCACCAGAGTTGAAAGAGATG 740 |||||| ||||||| ||||| | | | || ||||| |||||||||||||||||||||||| Sbjct 661 TTAAACGAATTGGCACGAAACGCTGATTTAGATCTTTCGCCACCAGAGTTGAAAGAGATG 720 Query 741 ATACAAGGTTGGAATCAGATTGTGTATCCTAAAGTTAACAATGGCGTTTACAGGTGCGGG 800 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 ATCCAAGATTGGAATCAGATTGTGTATCCTAAAGTTAACAATGGCGTTTACAGGTGCGGG 780 Query 801 TTTGCGCAGAGCCAAGAAGCGTATGATGGAGCAGTGAATGAACTCTTTAGTACCTTAGAT 860 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 781 TTTGCGCAGAGCCAAGAAGCGTATGATGGAGCAGTGAATGAACTCTTTAGTACCTTGGAT 840 Query 861 GAGATTGAGGATCACTTGGGTAGTAATAGATACTTGTGTGGAGAAAGGTTGACATTGGCT 920 |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 841 GAGATTGAGGATCACTTGGGTAGTAATAGATACTTGTGTGGAGAAAGGTTAACCTTGGCG 900 Query 921 GATGTATGTCTGTTCACAACTCTGATTCGTTTTGATTCGGTTTACAACATTCTATTCAAA 980 ||||| ||||| || ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 901 GATGTGTGTCTCTTTACAACTCTGATTCGTTTTGATCCGGTTTACAACATTCTATTCAAA 960 Query 981 TGCACCAAGAAGAAGCTTGTTGAATACCCAAATCTCTATGGCTATTTGCGCGAGATTTAC 1040 |||||||||||||| |||||||| || || |||||||||||||||||||| || || ||| Sbjct 961 TGCACCAAGAAGAAACTTGTTGAGTATCCGAATCTCTATGGCTATTTGCGGGACATGTAC 1020 Query 1041 CAGATTCCTGGTGTTGCGGCTACTTGTGATATTTCGGCTATAATGGATGGCTACTACAAG 1100 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1021 CAGATTCCTGGTGTTGCGGCTACTTGTGATATTTCGGCTATAATGGATGGGTACTACAAA 1080 Query 1101 ACGCTGTTTCCGCTAAACGCTAGTGGAATTCAACCGGCCATTTCTTCATCTGGCGATCAA 1160 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 1081 ACGCTGTTTCCGCTAAACGCAAGTGGAATTCAACCGGCTATTTCTTCATCTGGCGATCAA 1140 Query 1161 GATTCTCTCTGGAGACCTCATAACCGAGACTTGGTAGGTAAAGCCATTGAAGCACAGCTT 1220 || ||||||| |||||||||||||||||||||||| ||||||||| |||||||||| || Sbjct 1141 GAATCTCTCTTGAGACCTCATAACCGAGACTTGGTGGGTAAAGCCGTTGAAGCACAACTC 1200 Query 1221 TCGGTTTAAGCGTAGAAAACTGTACATAACTCA 1253 | |||||||||||||||||||||||||||||| Sbjct 1201 GCTGTTTAAGCGTAGAAAACTGTACATAACTCA 1233 > Ahg356687 jgi|Araly1|356687|fgenesh1_pg.C_scaffold_8000474 Length=1752 Score = 1229 bits (665), Expect = 0.0 Identities = 763/812 (94%), Gaps = 0/812 (0%) Strand=Plus/Plus Query 408 AAGGGTTTAAACGACGCCGTTCCGGTCTCAATCGCATCACCTGGTCAAGATGGATCATGG 467 ||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| Sbjct 931 AAGGGTTTAAACGACGCCGTTACAGTCTCAATCGCATCGCCTGGTCAAGATGGATCATGG 990 Query 468 GAATTCAAGAATAATAATATCCCAATCAAGGATAAGGATAAACTTATCCCGAGTTTGGAT 527 ||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 991 GAATTCAAGGATAACAATATCCCAATCAAGGATAAGGATCAACTTATCCCGAGTTTGGAT 1050 Query 528 AAAGCAAACCGGTGCCGGAATCTTAAGGAAGTGTACAAATCTAGAAGTGGAGGTTACGAT 587 || |||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 1051 AAGGCAAACCGATGCCGGAATCTTAAGGAAGTGTACAAATCAAGAACCGGAGGTTACGAT 1110 Query 588 GGGAGGTGTACTGTTCCAATGCTGTGGGATTTAAGGAAGAAAGATGTTGTTTGTAACGAA 647 ||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 1111 GGGAGGTGTACCGTTCCAATGCTGTGGGATTCAAGGAAGAAAGAAGTTGTTTGTAACGAA 1170 Query 648 AGCTATGATATTATCGAGTTCTTCAATTCAGGTTTAAACAAATTGGCCCGAAATGATAAC 707 ||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||| | | | Sbjct 1171 AGCTACGATATTATCGAGTTCTTCAATTCGGGTTTAAACGAATTGGCACGAAACGCTGAT 1230 Query 708 TTGGATCTCTCGCCACCAGAGTTGAAAGAGATGATACAAGGTTGGAATCAGATTGTGTAT 767 || ||||| |||||||||||||||||||||| ||| |||| ||||||||||||||||||| Sbjct 1231 TTAGATCTTTCGCCACCAGAGTTGAAAGAGAAGATCCAAGATTGGAATCAGATTGTGTAT 1290 Query 768 CCTAAAGTTAACAATGGCGTTTACAGGTGCGGGTTTGCGCAGAGCCAAGAAGCGTATGAT 827 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1291 CCTAAAGTTAACAATGGCGTTTACAGGTGCGGGTTTGCGCAGAGCCAAGAAGCGTATGAT 1350 Query 828 GGAGCAGTGAATGAACTCTTTAGTACCTTAGATGAGATTGAGGATCACTTGGGTAGTAAT 887 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1351 GGAGCAGTGAATGAACTCTTTAGTACCTTAGATAAGATTGAGGATCACTTGGGTAGTAAT 1410 Query 888 AGATACTTGTGTGGAGAAAGGTTGACATTGGCTGATGTATGTCTGTTCACAACTCTGATT 947 ||||||||||||||||||||||| || ||||| ||||| ||||| || |||||||||||| Sbjct 1411 AGATACTTGTGTGGAGAAAGGTTAACCTTGGCGGATGTGTGTCTCTTTACAACTCTGATT 1470 Query 948 CGTTTTGATTCGGTTTACAACATTCTATTCAAATGCACCAAGAAGAAGCTTGTTGAATAC 1007 ||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||| ||| Sbjct 1471 CGTTTTGATCCGGTTTACAACAATCTATTCAAGTGCACCAAGAAGAAGCTTGTTGAGTAC 1530 Query 1008 CCAAATCTCTATGGCTATTTGCGCGAGATTTACCAGATTCCTGGTGTTGCGGCTACTTGT 1067 || |||||||||||||||||||| || || |||||||||||||||||||||||||||||| Sbjct 1531 CCGAATCTCTATGGCTATTTGCGGGACATGTACCAGATTCCTGGTGTTGCGGCTACTTGT 1590 Query 1068 GATATTTCGGCTATAATGGATGGCTACTACAAGACGCTGTTTCCGCTAAACGCTAGTGGA 1127 ||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| Sbjct 1591 GATATTTCGGCTATAATGGATGGGTACTACAAAACGCTGTTTCCGCTAAACGCAAGTGGA 1650 Query 1128 ATTCAACCGGCCATTTCTTCATCTGGCGATCAAGATTCTCTCTGGAGACCTCATAACCGA 1187 ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 1651 ATTCAACCGGCTATTTCTTCATCTGGCGATCAAGAATCTCTCTTGAGACCTCATAACCGA 1710 Query 1188 GACTTGGTAGGTAAAGCCATTGAAGCACAGCT 1219 |||||||| ||||||||||||||||||||||| Sbjct 1711 GACTTGGTGGGTAAAGCCATTGAAGCACAGCT 1742 > Ahg907895 jgi|Araly1|907895|Al_scaffold_0002_976 Length=513 Score = 660 bits (357), Expect = 0.0 Identities = 411/438 (94%), Gaps = 0/438 (0%) Strand=Plus/Plus Query 792 AGGTGCGGGTTTGCGCAGAGCCAAGAAGCGTATGATGGAGCAGTGAATGAACTCTTTAGT 851 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76 AGGTGCGGGTTTGCGCAGAGCCAAGAAGCGTATGATGGAGCAGTGAATGAACTCTTTAGT 135 Query 852 ACCTTAGATGAGATTGAGGATCACTTGGGTAGTAATAGATACTTGTGTGGAGAAAGGTTG 911 ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 136 ACCTTAGATAAGATCGAGGATCACTTGGGTAGTAATAGATACTTGTGTGGAGAAAGGTTA 195 Query 912 ACATTGGCTGATGTATGTCTGTTCACAACTCTGATTCGTTTTGATTCGGTTTACAACATT 971 || ||||| ||||| ||||| || ||||||||||||||||||||| |||||||||||| | Sbjct 196 ACCTTGGCGGATGTGTGTCTCTTTACAACTCTGATTCGTTTTGATCCGGTTTACAACAAT 255 Query 972 CTATTCAAATGCACCAAGAAGAAGCTTGTTGAATACCCAAATCTCTATGGCTATTTGCGC 1031 |||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 256 CTATTCAAGTGCACCAAGAAGAAGCTTGTTGAGTACCCGAATCTCTATGGCTATTTGCGG 315 Query 1032 GAGATTTACCAGATTCCTGGTGTTGCGGCTACTTGTGATATTTCGGCTATAATGGATGGC 1091 || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 316 GACATGTACCAGATTCCTGGTGTTGCGGCTACTTGTGATATTTCGGCTATAATGGATGGG 375 Query 1092 TACTACAAGACGCTGTTTCCGCTAAACGCTAGTGGAATTCAACCGGCCATTTCTTCATCT 1151 |||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 376 TACTACAAAACGCTGTTTCCGCTAAACGCAAGTGGAATTCAACCGGCTATTTCTTCATCT 435 Query 1152 GGCGATCAAGATTCTCTCTGGAGACCTCATAACCGAGACTTGGTAGGTAAAGCCATTGAA 1211 ||||||||||| ||||||| |||||||||||||||||||||||| ||| ||||||| ||| Sbjct 436 GGCGATCAAGAATCTCTCTTGAGACCTCATAACCGAGACTTGGTGGGTGAAGCCATGGAA 495 Query 1212 GCACAGCTTTCGGTTTAA 1229 ||||| ||| |||||||| Sbjct 496 GCACAACTTGCGGTTTAA 513 > Ahg338653 jgi|Araly1|338653|fgenesh1_pg.C_scaffold_2000752 Length=1122 Score = 322 bits (174), Expect = 4e-87 Identities = 191/199 (96%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 20 aaaT-TCAGCCATGGCCAATTGCTTCGCGCCACAATTAACCTTCCCGTCCTTCTCGCCAC 78 |||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 1093 AAATCTCAGCCATGGCCAATTGCTTCGCGCCACAATTAACCTTCCCGGCCTTCACGCCAC 1034 Query 79 GCCATTTCAGCCCTAGAATGTCGCACCAATCACCAAAACCAAGCACGAGCACCACCACAA 138 |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 1033 GCCACCTCAGCCCTAGAATGTCACACCAATCACCAAAACCAAGCACGAGCACCACCACCA 974 Query 139 GCATCTTCACCTCCGCCACAAAGCTACTATGGGGACCATCTCTTCCTCCAGGTCTACTTA 198 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 973 GCATATTCACCTCCGCCACAAAGCTACTATGGGGACCATCTCTTCCTCCAGGTCTACTTA 914 Query 199 TCTCCACCGCTCGAACAGC 217 ||||||||||||||||||| Sbjct 913 TCTCCACCGCTCGAACAGC 895 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51275323365 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5