BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G44005.1

Length=656
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg948739 jgi|Araly1|948739|scaffold_800626.1                        472    2e-132


> Ahg948739 jgi|Araly1|948739|scaffold_800626.1
Length=328

 Score =  472 bits (255),  Expect = 2e-132
 Identities = 303/326 (93%), Gaps = 3/326 (1%)
 Strand=Plus/Plus

Query  47   TAAACT-AACTCT-AAAAGCTATGAACAAACAAAGTTTGAAGAGACTTCAGTTCCGGAGA  104
            |||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    TAAACTAAACTTTAAAAAGCTATGAACAAACAAAGTTTGAAGAGACTTCAGTTCCGGAGA  60

Query  105  TGGGGAAAGCGAATCGGAAGCTCGACGACGGCTTCAGCAACGCTAGGAAACACCGAGGAA  164
            ||||||||||||||||||||||||||||||| |||||  || ||||||||| | ||||||
Sbjct  61   TGGGGAAAGCGAATCGGAAGCTCGACGACGGTTTCAGGGACACTAGGAAACTCGGAGGAA  120

Query  165  AGAACGATTGTGGCGTTTGCGTTCTCATGTTGTGGAAAACCACGTGTTCTCGTGAAGCAG  224
            |||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| |||
Sbjct  121  AGAACGATTGTGGCGTTTGCGTTCTCATGTTGTGGACAACCGCGTGTTCTTGTGAAACAG  180

Query  225  TTTGTTTGGAGGCTTAAATCGCGCTTAAGGTGGTCTCGGAAGAGTGATCATAATAATATT  284
            ||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct  181  TTTGTTTGGAGGCTTAAATCGCGTTTGAGGTGGTCGCGGAAGAGTGATCATAATAATATT  240

Query  285  CAGTGTAGTTATGATCTCCGGAGCTATCATCTGAATTTCGACGACGGTTGGTCTCGCCGA  344
            ||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |||
Sbjct  241  CAGTGTAGTTATGATCTCCGGAGTTATCATCTTAACTTCGACGACGGTTGGTCTCGACGA  300

Query  345  CGGTGATTTT-AATTACATAGACGTT  369
            |||||||||| || || |||||||||
Sbjct  301  CGGTGATTTTTAAATAAATAGACGTT  326



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24055560627


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5