BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44010.1
Length=1333
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494595 jgi|Araly1|494595|fgenesh2_kg.8__411__AT5G44010.1 1781 0.0
> Ahg494595 jgi|Araly1|494595|fgenesh2_kg.8__411__AT5G44010.1
Length=1297
Score = 1781 bits (964), Expect = 0.0
Identities = 1131/1212 (93%), Gaps = 9/1212 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTGGAATTACCCAGAAATTTCCAAGGAAGATTTCAT-AAAGCTATTGAAAGGAAG 59
||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||
Sbjct 1 ATGGTTTGGAATTACCCAGAAATCTCCAAGGAAGATTTCATCAAA-CTATTGAAAGGAAG 59
Query 60 CATAAATAGTTCAGATACGTTTGGGGAATCTATGAGAGAGCTTGACGAAGCTATATCAGA 119
||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 60 CATAAATGGTTCAGATACGTTTGGGGAATCTGTGAGAGAGCTTGACGAAGCAATATCAGA 119
Query 120 GATGAAATCTAACCCTTTGTTCCCAAAGGGTTTGGAGAATTTATCATCAGATAATCTTTC 179
|| ||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 120 TATAAAAACCAACCCTTTGTTCCCAAAGGGTTTGGAGAATTTATCATCAGATACTCTTTC 179
Query 180 AAAGGGGAGAGAGTTTGTCTTAGAGCATTTGATGAATAACTCGACATTGAAGGATAAACA 239
||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAATGGGAGAGAATTTGTGTTAGAGCATTTGATGAATAACTCGACATTGAAGGATAAACA 239
Query 240 ACTCCAAGCTATTCTAGTTGCTGCGGTGGAATCAGGTGACGGTATTAGAGAGATAATTGA 299
||||| |||| |||| ||||| |||||||||||||| |||||||||||||| ||||| ||
Sbjct 240 ACTCCGAGCTGTTCTGGTTGCAGCGGTGGAATCAGGAGACGGTATTAGAGATATAATCGA 299
Query 300 TGGGAAACTCTGTAAGAGGCAATCTGTTGTGTCCTGTGTATCAGCACTTGAAACTGGTTT 359
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 300 TGGGAAGCTCTGTAAGAGGCAATCTGTTGTGTCCTGTGTATCAGCACTTGAGACTGGTTT 359
Query 360 GAAGATCCTTTCTAAGCACATAGAGCCTAAAGAGTCCCTACATAGAGAAGACAATGATGC 419
||| ||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 360 GAATATCCTTTCTAAGCACATAGAGCCTAAAGAGTTGTTACATAGAGAAGACAATAATAC 419
Query 420 AACTTTCTTGGGTTTGGGACAACAGCCTATTGAGCTTTTAAGATGGAATATCTGGCAGTC 479
|||||||||| | | || | ||||||||||||||||||| | ||||| |||||||| ||
Sbjct 420 AACTTTCTTGAGCTCGGAAAAACAGCCTATTGAGCTTTTGACCTGGAACATCTGGCAATC 479
Query 480 GAAAGCGATATCTTATTTTCTTAGTAAGAGAACGTTAAGATTAGTATCAGGAGCCAGCTT 539
|||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 480 GAAAGCTATATCTTATTTTCTTAGTAAGAGAACCTTAAGATTGGTATCGGGAGCCAGCTT 539
Query 540 GATATTTTCTGCACCAAAAGCTCAGTGGGTAGAAATGTTGAGAAGGTTGCGTGTTTCAGA 599
|||||||||||||||||||||||||||||||||| |||| |||||| ||||||| |||||
Sbjct 540 GATATTTTCTGCACCAAAAGCTCAGTGGGTAGAAGTGTTAAGAAGGCTGCGTGTCTCAGA 599
Query 600 TAAGAATGATGACGATATATTCATCGAAAAGATTGAGCTATTGTTACTAGGATGTGTAAC 659
||||||||||||||||||||||| ||||||||| |||||||||||| ||||||| || ||
Sbjct 600 TAAGAATGATGACGATATATTCAACGAAAAGATCGAGCTATTGTTAATAGGATGCGTTAC 659
Query 660 AAGCAGATGGACCCATTTAATCGAAGGTATCATGTCAGTTTCCTACAAATCTGTCACTGT 719
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 AAGCAGATGGACTCATTTAATCGAAGGTATCATGTCAGTTTCATACAAATCTGTCACTGT 719
Query 720 GTCAGAAGAATACGAGGAGTTATGCAAGCTTCTTCTTCAAAGATCTAAATGCTTAAAACA 779
||||||| |||||||||||||||||||||| |||||||||||||||||| | ||||| ||
Sbjct 720 GTCAGAACAATACGAGGAGTTATGCAAGCTGCTTCTTCAAAGATCTAAAAGTTTAAAGCA 779
Query 780 GAACGAGATTGCTTTGAATTCTAAGGTTGAAGAGATTCTAGAGTATCTAACAGAAATACT 839
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAACGAGATTGCTTTGAATTCAAAGGTTGAAGAGATTCTAGAGTATCTAACAGAAATACT 839
Query 840 TGAGAGTCGTTTTCATCAGCTCTGGAAATTGCCTTCTGCCCTTACCGCAGCTGCAATTCC 899
||||||||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 840 AGAGAGTCGTTTACATCACCTCTGGAAATTACCTTCCGCCCTTACCGCAGCAGCAATTCC 899
Query 900 ATCATGGTCACCGCTGTTTGGTCTGTATTTTGGCGGAATAGAGAAACAGTTGAAACTAGA 959
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 900 ATCATGGTCACCGCTGTTTGGTCTGTATTTTGGTGAAATAGAGAAACAGTTGAAACTAGA 959
Query 960 CCACTCAACAACAAGATTTTGCAGCTGCGATAAAGATCTAAACGAGCACAATGACTGTGA 1019
||||||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 960 CCACTCAACAACAAGATGTTGTAGCTGTGATAAAGATCTAAACGAGCACAAGGACTGTGA 1019
Query 1020 GCTCGCGGAAAGAGTTTGGTGCTTGTACGTATTCCATATCTGCATATGCCACTAGA-A-A 1077
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 1020 GCTCGCGGAAAGAGTTTGGTGCTTGTACGTATTCCATATCTGCAAATGCCACTAGATAGA 1079
Query 1078 AA-CTAATGGTCATTGATCAATACAAGAAGATCAG-TTTCTTCAAGGTAAG-ATCACATT 1134
|| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1080 AAACTAATGGTCATTGATCAATACAAGAAGATCAGCTTTCTTCAAGGTAAGGATCACATT 1139
Query 1135 GATGCAGATGTTTTGTCAAAATATCTTATGAAAACTCT-GTTTTCTTGCGTTTGCGATTA 1193
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1140 GATGCAGATGTTTTGTCAATATATCTTATGAAAACTCTTGTTTTCTTGCGTTTGCGATTA 1199
Query 1194 GATGATAA-AGA 1204
|||||||| |||
Sbjct 1200 GATGATAACAGA 1211
Score = 152 bits (82), Expect = 6e-36
Identities = 93/98 (95%), Gaps = 2/98 (2%)
Strand=Plus/Plus
Query 1224 GATGAGTAACAGAAAGATCCAGAAATG-AATTGATTTCTAGTTCGAGATATTTCCTTAGC 1282
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1200 GATGA-TAACAGAAAGATCCAGAAATGAAATTGATTTCTAGTTCGAGATATTTCCTTTGC 1258
Query 1283 TTTATTTTGGTTGTTTAAAATTGAATTCTCTTTGTTTA 1320
||||||||| || |||||||||||||||||||||||||
Sbjct 1259 TTTATTTTGTTTCTTTAAAATTGAATTCTCTTTGTTTA 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49864775436
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5