BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44020.1
Length=1133
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948737 jgi|Araly1|948737|scaffold_800624.1 1358 0.0
Ahg470382 jgi|Araly1|470382|fgenesh2_kg.1__336__AT1G04040.1 440 1e-122
> Ahg948737 jgi|Araly1|948737|scaffold_800624.1
Length=868
Score = 1358 bits (735), Expect = 0.0
Identities = 815/854 (95%), Gaps = 4/854 (0%)
Strand=Plus/Plus
Query 20 TCAACATGGCTAGATCCTTGTTGCTCTCGCTAACCCTCACAT-TCCTCTTCGCCGGAATT 78
|||||||||||||||||||||||||||||||||| ||| | | |||||||| |||||||
Sbjct 17 TCAACATGGCTAGATCCTTGTTGCTCTCGCTAACTCTCGC-TGTCCTCTTCACCGGAATG 75
Query 79 GTCTCAGCTCGTGACTGGAACATCCTGAGCCAGCTCAAAGGAACCACAACCACCACGAAG 138
|||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||
Sbjct 76 GTCTCAGCTCGTGACTGGAACATCCTGAACCAGCTCAAAGGAACCACAACCACAACAAAG 135
Query 139 ACTAGCCAAACCGG-CGTCACATCTTTGAAAGCTCCCAACCTAAACGGATACTGTGAGAG 197
|||||||| ||||| | ||||||||||||||| || ||||||||||||||||| || ||
Sbjct 136 ACTAGCCAGACCGGTC-TCACATCTTTGAAAGGACCAAACCTAAACGGATACTGCGAAAG 194
Query 198 CTGGAGAGTCAACGTGGAGCTTAACAACATAAGGGACTTTAAGGTGGTTCCACAGGAATG 257
|||||||||||||||||||||||||||||| ||||||||| ||| || |||||||||||
Sbjct 195 CTGGAGAGTCAACGTGGAGCTTAACAACATCAGGGACTTTTTGGTTGTGCCACAGGAATG 254
Query 258 TGTATGGTTCGTCCAAAAGTACATGACCTCATCTCAATACGAAGATGACGTGGAGAGAGC 317
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 255 TGTATGGTTCGTCCAAAAGTACATGACCTCATCTCAATACGAGGATGACGTGGAGAGAGC 314
Query 318 CGTCGATGAAGCCATCCTCTACCTCGGAAAAACTTGTTGCGAGAAGAAGACATGCGATGG 377
||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 315 CGTTGATGAAGCCATCCTCTACCTCGGAAAAACTTGTTGCGAAAAGAAGAAATGCGATGG 374
Query 378 CATGGATGCTTGGATCTTTGACATTGATGACACTCTTCTCTCAACCATTCCTTACCACAA 437
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 375 CATGGATGCTTGGATCTTTGACATTGATGACACTCTTCTCTCCACCATTCCTTACCACAA 434
Query 438 GAGCAACGGTTGTTTCGGTGGTGAGCAACTGAACACGACCAAGTTCGAGGAATGGCAAAA 497
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 435 GAGCAACGGCTGTTTCGGTGGTGAGCAATTGAACACGACCAAGTTCGAGGAATGGCAAAA 494
Query 498 TTCGGGCAAGGCACCAGCGGTTCCACACATGGTGAAGTTGTACCATGAGATCAGAGAGAG 557
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 495 ATCGGGCAAGGCACCAGCGGTTCCAAACATGGTGAAGTTGTACCATGAGATCAGAGAGAG 554
Query 558 AGGTTTCAAGATCTTTTTGATCTCTTCTCGTAAAGAGTATCTCAGATCTGCCACCGTCGA 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 AGGTTTCAAGATCTTTTTGATCTCTTCTCGTAAAGAGTATCTCAGATCTGCCACCGTCGA 614
Query 618 AAATCTTATTGAAGCCGGTTACCACAGCTGGTCTAACCTCCTTCTGAGGGGAGAAGATGA 677
||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 615 AAACCTTATCGAAGCCGGTTACCACGGCTGGTCTAACCTCCTTCTCAGGGGAGAAGATGA 674
Query 678 TGAAAAGAAGAGTGTGAGCCAATACAAAGCAGATTTGAGGACATGGCTTACAAGTCTTGG 737
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 675 TGAGAAGAAGAGTGTGAGCCAATACAAAGCAGATTTGAGGTCATGGCTTACAAGTCTTGG 734
Query 738 GTACAGAGTTTGGGGAGTGATGGGTGCACAATGGAACAGCTTCTCTGGTTGTCCAGTTCC 797
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 GTACCGAGTTTGGGGAGTGATGGGTGCACAATGGAACAGCTTCTCTGGTTGTCCAGTTCC 794
Query 798 CAAGAGAACCTTCAAGCTCCCTAACTCCATCTACTATGTCGCCTGATTAAATCTTATTTA 857
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 795 CAAGAGAACCTTCAAGCTCCCTAACTCCATCTACTATGTCGCCTGATCAAATCTTATTTA 854
Query 858 CTAACAAAACAATA 871
||||||||||||||
Sbjct 855 CTAACAAAACAATA 868
> Ahg470382 jgi|Araly1|470382|fgenesh2_kg.1__336__AT1G04040.1
Length=1066
Score = 440 bits (238), Expect = 1e-122
Identities = 548/693 (79%), Gaps = 40/693 (6%)
Strand=Plus/Plus
Query 176 ACCT-AAACGGATACTGTGAGAGCTGGA-GAGTCAACGTGG-AGCTTAACAACATAAGGG 232
|||| ||| ||||||||||| ||||||| || ||||||||| || || ||||||| ||
Sbjct 192 ACCTGAAA-GGATACTGTGAAAGCTGGAGGA-TCAACGTGGAAG-TTCACAACATCAGAA 248
Query 233 ACTTTAAGGTGGTTCCACAGGAATGTGTATGGT-TCGTCCAAAAGTACATGACCTCATCT 291
|||| | ||||| || || || ||||||| | | || | | |||||||| |||||
Sbjct 249 ACTTCGATGTGGTGCCTCAAGAGTGTGTAT-CTCACATCGAGGATTACATGACGTCATCG 307
Query 292 CAATACGAA-GATGACGTGGAGAGAGCCGTCGATGAAGCCA-TCCTCTACCTCGGAAAAA 349
|| ||| || |||||||||| |||| |||| ||||| | || || || | |||||| |
Sbjct 308 CAGTAC-AAGGATGACGTGGCGAGAACCGTTGATGAGGTCATTCTTC-ATTTCGGAAGTA 365
Query 350 CT-TGTTGCGAG-AAGAAGACA-TGCGATGGCATGGATGCTTGGATCTTTGACATTGATG 406
| ||||| || |||| | | || ||||||||||| |||||||||||||| | ||||
Sbjct 366 -TGTGTTG-TAGCAAGACTA-AGTGTGATGGCATGGACGCTTGGATCTTTGATGTCGATG 422
Query 407 ACACTCTTCTCTCAACCATTCCTTACCACAAGAGCAACGG-TTGTTTCGGTGGTGAGCAA 465
|||| |||||||| ||||| ||||||||||||| || || || ||||| || ||| ||
Sbjct 423 ACACACTTCTCTCTACCATACCTTACCACAAGAAAAATGGCTT-CTTCGGAGGAGAGAAA 481
Query 466 CTGAACACGACCAAGTTCGAGGAATGGCA-AAATTCG-GGCAAGGCACCAGCGGTTCCAC 523
||||| | || || |||||||| ||| | || | | || |||||||| || ||||
Sbjct 482 TTGAACTCAACGAAATTCGAGGATTGG-ATGAAGAAGAAG-AAAGCACCAGCAGTGCCAC 539
Query 524 ACATGGTGAAGTTGTACCATGAGATCAGAGAGAGAGG-TTTCAAGATCTTTTTGATCTCT 582
||||| ||| |||||||||||||||||||| ||||| || |||||||| |||||||||
Sbjct 540 ACATGAAGAAATTGTACCATGAGATCAGAGAAAGAGGCATT-AAGATCTTCTTGATCTCT 598
Query 583 TCTCGTAAAGAGTATCTCAGATCTGCCACCGTCGAAAATCTTATTGAAGCCGGTTACCAC 642
|| || ||||| |||||||| |||||||||||||| || || || ||||||||||| |
Sbjct 599 TCCCGGAAAGAATATCTCAGGTCTGCCACCGTCGACAACCTCATCCAAGCCGGTTACTAT 658
Query 643 AGCTGGTCTAACCTCCTTCTGA-GGGG--AGAAGATGATG-AAAAGAAGAGTGTGAGCCA 698
||||||| ||||| | || | |||| ||||||||| | ||||| || |||| ||
Sbjct 659 GGCTGGTCCAACCTAATGCTCAGGGGGCTAGAAGATGA-GCAAAAG--GA-AGTGAAACA 714
Query 699 ATACAAAG-CAGATTTGAGGACATGGCTTACAAGTCTTGGGTACAGAGTTTGGGGAGTGA 757
|||| ||| |||| ||| |||||||| | |||||||| |||||||||||||||||||
Sbjct 715 ATAC-AAGTCAGAAAAGAGAACATGGCTGATGAGTCTTGGTTACAGAGTTTGGGGAGTGA 773
Query 758 TGGGTGCA-CAATGGAACAGCTTCT-CTGGTTGTCCAGTTCCCAAGAGAACCTTCAAGCT 815
|||| | | ||||||| |||||| | | |||||||| |||| |||||||||||||||||
Sbjct 774 TGGGAG-ACCAATGGAGCAGCTT-TGCAGGTTGTCCTCTTCCTAAGAGAACCTTCAAGCT 831
Query 816 CCCTAACTCCATCTACTATGTCGCCTGATTAAA 848
||||||||||||||||||||||||||||| |||
Sbjct 832 CCCTAACTCCATCTACTATGTCGCCTGATCAAA 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42240192036
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5