BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44030.1
Length=3377
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494593 jgi|Araly1|494593|fgenesh2_kg.8__409__AT5G44030.1 5144 0.0
> Ahg494593 jgi|Araly1|494593|fgenesh2_kg.8__409__AT5G44030.1
Length=3349
Score = 5144 bits (2785), Expect = 0.0
Identities = 3159/3337 (95%), Gaps = 35/3337 (1%)
Strand=Plus/Plus
Query 49 AGAGCTCAG-TGTACCTCGCCATGGAACCAAACACCATGGCCAGCTTCGACGATGAGCAT 107
||||||||| | | ||| ||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 25 AGAGCTCAGCT-TGCCTTGCCATGGAACCAAACACCATGGCCACCTTTGACCATGAGCAT 83
Query 108 CGTCATTCCTCATTCTCGGCTAAGATTTGCAAAGTCTGTGGCGATGAGGTCAAAGACGAT 167
||||| | |||| | |||||||||| || | ||| ||||||||||||||||||||||||
Sbjct 84 CGTCA-T--TCATCCCCGGCTAAGATCTGTAGAGTTTGTGGCGATGAGGTCAAAGACGAT 140
Query 168 GACAATGGTCAGACTTTTGTGGCGTGTCACGTGTGCGTTTACCCGGTTTGCAAACCTTGC 227
|||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 141 GACAATGGCCAGACTTTTGTGGCGTGCCACGTGTGCGCTTACCCGGTTTGCAAACCTTGC 200
Query 228 TATGAATATGAGCGTAGCAACGGTAACAAATGTTGCCCTCAATGCAACACTCTTTACAAA 287
|||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 201 TATGAATACGAGCGTAGCAACGGTAACAAATGTTGCCCTCAATGCAATACTATTTACAAA 260
Query 288 CGCCACAAAGGCTCTCCAAAAATCGCCGGAGATGAAGAAAACAATGGTCCTGATGATTCA 347
||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 261 CGCCACAGAGGCTCTCCGAAAATCGCTGGAGATGAAGAAAACAATGGTCCTGATGATTCA 320
Query 348 GATGATGAGTTGAATATCAA-ATATCGCCAGGATGGTTCCTCCATTCACCAGAATTTTGC 406
|||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||
Sbjct 321 GATGATGAGTTGAATATCAAGA-ATCGCCAGGATGCTTCCTCCATTCACCAGAATTTTGC 379
Query 407 CTATGGATCGGAAAATGGAGACTACAACAGTAAGCAGCAATGGCGTCCAAATGGTCGAGC 466
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||
Sbjct 380 CTATGGATCGGAAAATGGAGATTACAATAGTAAGCAGCAATGGCGTCCAAATGGGCGGGC 439
Query 467 CTTTTCTTCCACCGGAAGTGTGTTGGGGAAAGACTTTGAAGCTGAGAGAGATGGCTACAC 526
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 440 CTTTTCTTCCACCGGAAGTGTGTTGGGGAAAGACTTTGAAGCTGAAAGAGATGGCTACAC 499
Query 527 AGATGCGGAGTGGAAAGAACGTGTAGATAAATGGAAAGCGAGGCAAGAGAAGAGAGGTTT 586
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 500 AGATGCAGAGTGGAAAGAACGAGTAGATAAATGGAAAGCGAGGCAAGAGAAGAGAGGTTT 559
Query 587 AGTGACTAAAGGAGAACAAACAAACGAAGACAAAGAAGATGATGAAGAAGAATACCTAGA 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 560 AGTGACTAAAGGAGAACAAACAAACGAAGACAAAGAAGATGATGAAGAAGAATACCTCGA 619
Query 647 TGCTGAAGCAAGACAACCTCTCTGGAGAAAAGTCCCAATCTCTTCGAGCAAAATCAGTCC 706
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 620 TGCTGAAGCAAGACAACCTCTCTGGAGAAAAGTCCCAATCTCATCGAGCAAAATCAGTCC 679
Query 707 TTACCGCATCGTGATCGTTCTTCGCCTTGTGATCTTAGTTTTCTTCTTCCGTTTCCGTAT 766
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 680 TTACCGCATTGTGATCGTTCTTCGTCTTGTGATCTTAGTTTTCTTCTTCCGTTTCCGTAT 739
Query 767 CTTGACACCAGCCAAAGACGCATACCCTCTCTGGCTTATCTCAGTCATCTGCGAGATCTG 826
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 740 CTTGACACCAGCCAAAGACGCATACCCTCTCTGGCTTATCTCAGTCATCTGTGAGATCTG 799
Query 827 GTTCGCTCTCTCTTGGATCCTTGATCAGTTCCCGAAATGGTTTCCGATTAACCGAGAAAC 886
|||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 800 GTTCGCACTTTCTTGGATCCTTGATCAGTTCCCGAAATGGTTTCCAATTAACCGAGAAAC 859
Query 887 CTACCTTGACCGTCTCTCTATGAGATTTGAACGGGATGGGGAAAAGAACAAGCTTGCACC 946
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 860 CTATCTTGACCGTCTCTCTATGAGATTTGAACGGGATGGCGAAAAGAACAAGCTTGCACC 919
Query 947 GGTTGATGTGTTTGTCAGTACAGTGGATCCGCTCAAGGAACCTCCCATAATCACAGCCAA 1006
||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 920 GGTTGATGTGTTTGTCAGTACGGTGGATCCGCTCAAGGAGCCTCCGATAATCACAGCCAA 979
Query 1007 CACAATTCTTTCGATCTTAGCCGTTGATTACCCAGTGAATAAGGTGAGCTGCTATGTGTC 1066
||| ||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||
Sbjct 980 CACTATTCTTTCGATCTTATCCGTTGATTACCCAGTAAATAAGGTTAGCTGCTATGTGTC 1039
Query 1067 TGATGACGGTGCATCAATGCTCCTGTTCGATACATTGTCCGAAACTTCCGAGTTTGCAAG 1126
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1040 TGATGACGGTGCATCAATGCTACTGTTCGATACATTGTCTGAAACTTCCGAGTTTGCAAG 1099
Query 1127 GAGATGGGTTCCGTTTTGCAAGAAGTACAATGTTGAGCCAAGAGCTCCAGAGTTTTACTT 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 GAGATGGGTTCCGTTTTGCAAGAAGTACAATGTTGAGCCAAGAGCTCCAGAGTTTTACTT 1159
Query 1187 CTCAGAGAAGATTGATTACCTAAAGGATAAAGTCCAAACTACATTCGTCAAAGATCGCAG 1246
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 CTCTGAGAAGATTGATTACTTAAAGGATAAAGTCCAAACTACATTCGTCAAAGATCGCAG 1219
Query 1247 AGCAATGAAGAGAGAATATGAAGAATTCAAAGTGAGGATCAATGCTTTAGTAGCTAAAGC 1306
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1220 AGCAATGAAGAGAGAATATGAAGAATTCAAAGTGAGGATCAATGCTTTAGTGGCTAAAGC 1279
Query 1307 TCAAAAGAAGCCTGAAGAAGGTTGGGTTATGCAAGATGGTACACCATGGCCTGGGAATAA 1366
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1280 TCAGAAGAAGCCTGAAGAAGGTTGGGTGATGCAAGATGGTACACCATGGCCTGGGAACAA 1339
Query 1367 CACTCGTGATCATCCCGGGATGATTCAGGTGTATCTCGGCAAAGAAGGAGCATTCGACAT 1426
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1340 CACTCGTGATCATCCCGGGATGATTCAGGTGTATCTCGGTAAAGAAGGAGCATTCGACAT 1399
Query 1427 TGATGGTAACGAATTGCCACGTCTCGTGTATGTATCAAGAGAGAAGCGTCCTGGTTACGC 1486
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1400 TGATGGTAACGAATTGCCACGCCTCGTGTATGTATCAAGAGAGAAGCGTCCTGGTTACGC 1459
Query 1487 ACACCACAAGAAAGCTGGAGCCATGAATGCAATGGTTCGAGTCTCTGCAGTACTCACTAA 1546
||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||
Sbjct 1460 ACACCACAAGAAAGCTGGAGCTATGAATGCAATGGTTCGAGTCTCAGCAGTGCTCACAAA 1519
Query 1547 TGCTCCATTCATGCTTAATCTCGACTGTGACCATTACATCAACAACAGTAAAGCCATAAG 1606
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1520 TGCTCCATTCATGCTTAATCTTGACTGTGATCATTACATCAACAACAGTAAAGCCATAAG 1579
Query 1607 AGAATCAATGTGCTTTCTAATGGATCCACAGCTTGGTAAAAAGCTCTGTTATGTCCAATT 1666
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1580 AGAATCAATGTGCTTTCTAATGGATCCACAGCTTGGTAAAAAGCTTTGTTATGTTCAATT 1639
Query 1667 CCCACAAAGATTCGACGGAATCGATCTTAACGATCGATACGCCAACAGAAACATCGTCTT 1726
||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1640 CCCTCAAAGATTCGACGGAATCGATCATAACGATCGATACGCTAACAGAAACATCGTCTT 1699
Query 1727 CTTCGATATAAACATGAGAGGCTTAGATGGAATCCAAGGACCAGTCTATGTAGGAACAGG 1786
||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1700 CTTCGATGTAAACATGAGAGGCTTAGATGGAATTCAAGGACCAGTCTACGTAGGAACAGG 1759
Query 1787 ATGTGTATTCAATAGACCAGCATTATACGGATACGAACCTCCGGTATCGGAAAAACGAAA 1846
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1760 ATGTGTATTCAATAGACCAGCATTATACGGATACGAACCACCGGTATCGGAAAAAAGAAA 1819
Query 1847 GAAA-ATGACATGTGATTGTTGGCCGTCGTGGATCTGCTGTTGTTGCGGCGGAGGTAACC 1905
||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1820 -AAAGATGACCTGTGATTGTTGGCCGTCGTGGATTTGCTGTTGTTGCGGCGGAGGTAACC 1878
Query 1906 GTAATCACAAATC-A--------GATTCGTCAAAGAAGAAATCAGGAATCAAGAGCTTGT 1956
||||||||||||| | ||||||||||||||||||||||||||||| |||||||
Sbjct 1879 GTAATCACAAATCGAAATCATCAGATTCGTCAAAGAAGAAATCAGGAATCAAAAGCTTGT 1938
Query 1957 TCTCGAAACTAAAGAAGAAGA-CTAAGAAGAAGAGTGATGA-TA-AA--ACGATGAGCAG 2011
||||||||||||||||||||| | | ||||||||||||| | || || |||||||| ||
Sbjct 1939 TCTCGAAACTAAAGAAGAAGAAC-ATGAAGAAGAGTGAT-ACTACAACGACGATGAGTAG 1996
Query 2012 CTATAGTAGAAAACGATCATCGACGGAGGCGATTTTTGATTTGGAAGATATTGAGGAAGG 2071
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1997 CTATAGTAGAAAACGATCATCGACGGAGGCGATTTTTGATTTGGAAGATATTGAAGAAGG 2056
Query 2072 GCTTGAAGGATATGATGAGCTTGAGAAATCTTCGTTAATGTCGCAGAAGAATTTTGAGAA 2131
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2057 ACTTGAAGGATATGATGAGCTTGAGAAATCGTCGTTAATGTCGCAGAAGAATTTTGAGAA 2116
Query 2132 GAGATTTGGAATGTCTCCTGTGTTTATTGCGTCGACGTTGATGGAGAACGGAGGATTGCC 2191
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2117 GAGATTTGGGATGTCTCCTGTGTTTATTGCGTCGACGTTGATGGAGAACGGAGGTTTGCC 2176
Query 2192 GGAGGCGACGAACACGAGCTCGTTGATCAAAGAAGCTATTCATGTTATTAGCTGTGGTTA 2251
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2177 GGAGGCGACGAACACGAGCTCGTTGATCAAAGAAGCGATTCATGTTATTAGCTGTGGTTA 2236
Query 2252 TGAAGAGAAGACTGAATGGGGCAAAGAGATTGGATGGATTTATGGATCAGTAACAGAAGA 2311
||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 2237 TGAAGAGAAGACTGAATGGGGCAAAGAGATTGGATGGATATATGGATCAGTCACGGAAGA 2296
Query 2312 TATCCTCACTGGATTTAGAATGCATTGTAGAGGTTGGAAATCAGTTTACTGTATGCCTAA 2371
||||| || ||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 2297 CATCCTTACGGGATTCAGGATGCATTGTAGAGGTTGGAAATCAGTTTATTGTATGCCTAA 2356
Query 2372 AAGACCAGCTTTCAAAGGATCAGCTCCGATCAATTTATCTGATCGGTTGCACCAAGTTCT 2431
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2357 AAGGCCAGCTTTCAAAGGATCAGCTCCGATCAATTTATCCGATCGGTTGCACCAAGTACT 2416
Query 2432 TAGATGGGCTCTTGGTTCCGTCGAAATCTTCTTTAGTCGTCATTGTCCTTTGTGGTATGC 2491
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2417 TAGATGGGCACTCGGTTCCGTCGAAATCTTCTTTAGTCGTCATTGTCCTTTGTGGTATGC 2476
Query 2492 TTGGGGAGGCAAGCTTAAGATTCTAGAACGTCTTGCTTACATCAACACAATTGTTTATCC 2551
||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2477 CTGGGGAGGCAAACTCAAGATTCTTGAACGTCTTGCTTACATCAACACAATTGTTTATCC 2536
Query 2552 TTTCACTTCTATTCCTCTACTTGCCTATTGTACTATTCCGGCCGTTTGTCTTCTCACCGG 2611
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 2537 TTTCACTTCTATTCCTCTGCTTGCTTATTGTACTATTCCGGCTGTTTGTCTTCTCACCGG 2596
Query 2612 CAAGTTCATCATTCCTACGATCAACAATTTCGCAAGCATATGGTTCTTAGCTCTGTTCCT 2671
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2597 CAAGTTCATCATTCCTACGATCAACAATTTCGCAAGCATATGGTTCCTAGCTCTGTTCCT 2656
Query 2672 ATCAATCATTGCAACGGCTATCTTAGAACTCCGGTGGAGTGGTGTAAGCATCAATGACCT 2731
|||||||||||| ||||| |||||||| |||||||||||||| || ||||| || |||||
Sbjct 2657 ATCAATCATTGCGACGGCGATCTTAGAGCTCCGGTGGAGTGGCGTGAGCATAAACGACCT 2716
Query 2732 CTGGCGTAACGAGCAATTCTGGGTGATTGGCGGTGTCTCAGCTCATCTCTTCGCTGTCTT 2791
||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 2717 TTGGCGTAACGAGCAATTCTGGGTAATTGGTGGTGTCTCAGCTCATCTCTTCGCAGTCTT 2776
Query 2792 TCAAGGTCTTCTTAAAGTTCTCTTTGGTGTTGACACTAACTTCACCGTCACGTCAAAAGG 2851
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2777 TCAAGGTCTTCTCAAAGTTCTCTTCGGTGTTGACACTAACTTCACCGTCACGTCAAAAGG 2836
Query 2852 AGCCAGTGACGAAGCCGATGAGTTTGGAGATCTTTACCTCTTTAAATGGACAACCCTTCT 2911
||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2837 AGCCAGTGACGAAGCTGATGAGTTTGGAGATCTTTACCTCTTCAAATGGACAACTCTTCT 2896
Query 2912 CATCCCTCCGACAACTCTCATTATTCTCAACATGGTCGGTGTTGTTGCCGGAGTTTCTGA 2971
|||||||||||| || ||||| || || |||||||| |||||||| ||||||||||||||
Sbjct 2897 CATCCCTCCGACTACGCTCATCATCCTTAACATGGTTGGTGTTGTCGCCGGAGTTTCTGA 2956
Query 2972 CGCTATTAACAATGGATATGGTTCTTGGGGACCGCTTTTTGGGAAACTGTTTTTCGCGTT 3031
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2957 CGCTATTAACAATGGATATGGTTCTTGGGGACCGCTCTTTGGGAAACTGTTTTTCGCGTT 3016
Query 3032 TTGGGTCATTGTTCATCTTTATCCTTTCCTCAAAGGTTTGATGGGTAGACAAAACCGAAC 3091
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 3017 TTGGGTCATTGTTCATCTTTACCCTTTCCTCAAAGGTTTGATGGGTCGACAAAACCGAAC 3076
Query 3092 ACCGACGATTGTTGTTCTTTGGTCTATCCTTCTCGCTTCGATCTTCTCTTTGGTTTGGGT 3151
|||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 3077 ACCGACAATCGTTGTTCTTTGGTCTATCCTTCTCGCCTCGATCTTCTCGTTGGTTTGGGT 3136
Query 3152 TCGGATTGATCCGTTCTTGCCGAAACAGACTGGTCCGTTACTGAAGCAATGTGGCGTCGA 3211
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3137 TCGGATCGATCCGTTCTTGCCGAAACAGACTGGTCCGTTACTGAAGCAGTGTGGCGTCGA 3196
Query 3212 CTGTTAAATGAGGAACCGCATTT---T---CGTTTTGGACCGCTATTTTGAGCCATTTTG 3265
||||||| ||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 3197 CTGTTAA-TGAGGAACCGCATTTGCGTTTGCGTTTTGGACCTCTATTTTGAGCCATTTTG 3255
Query 3266 CTTGGCCTATTTTTCCGATTTGGGTGTTCTTTGTTGGATTATATGGATTTGTAAGGAGGa 3325
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3256 CTTGGCCTATTTTTCAGATTTGGGTGTTCTTTGTTGGATTATATGGATTTGTAAGGAG-A 3314
Query 3326 aaaaaaaTACAAAACTTTGATTCACTTGTGAAATAAA 3362
|||| | | || | |||| | ||||||||||||||||
Sbjct 3315 AAAAGATT-CATA-CTTTAAATCACTTGTGAAATAAA 3349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127492869550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5