BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44040.1
Length=1720
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494592 jgi|Araly1|494592|fgenesh2_kg.8__408__AT5G44040.1 1736 0.0
> Ahg494592 jgi|Araly1|494592|fgenesh2_kg.8__408__AT5G44040.1
Length=1485
Score = 1736 bits (940), Expect = 0.0
Identities = 1249/1393 (90%), Gaps = 41/1393 (3%)
Strand=Plus/Plus
Query 224 TAGAAGAGAATGGGTTGCTTACTTGGTTGCTTCGGTCGTCGGAAGAATCGTCGCCGTCAG 283
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 76 TAGAAGAGAATGGGTTGCTTACTTGGTTGCTTTGGTCGTCGGAAGAATCGTCGCCGTCAA 135
Query 284 AGACG-CAGAGAATCTTTTC-AGCCACGTTTAAACAGAATCTCTGAGGAAGCTGCAAAGG 341
||||| | ||||||| |||| | || ||||||||||||||||||||||| || |||||
Sbjct 136 AGACGTC-GAGAATC-TTTCAATCCTTGTTTAAACAGAATCTCTGAGGAATCTATAAAGG 193
Query 342 ATGTTCTTTTGAATCTTAGGGTTCCTACTGTTGAAGAAGTCCCAAAGTATGCAAAAGATT 401
||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||
Sbjct 194 ATGTTCTTTTGAATCTTAGGGTTTCTAATGTTGAACAAGTCCCAAAGTATGCAAAAGATT 253
Query 402 CAACTGTTATGGAAGTCCCTAAAATCTCGGAGGTGTCTCCAAAGGATAATCATGTGAACG 461
||| |||| |||||||| ||||||||||||||||||||||||| ||| ||||| | || |
Sbjct 254 CAAGTGTTTTGGAAGTCTCTAAAATCTCGGAGGTGTCTCCAAAAGATGATCATCT-AA-G 311
Query 462 TTGTTGAGAAAGTCCCTACAGTTTCTGTAACTCCGATCACTGATA---TCTGTGACAAGG 518
||||||| |||| ||| ||||||||| | |||||| ||| ||| |||||| |||||
Sbjct 312 -TGTTGAGGAAGTATCTAAAGTTTCTGTGATTCCGATTACTAATATCTTCTGTGGCAAGG 370
Query 519 TTGAGGAGAAACAGAGTCCGAGTCCAAGTCCAAATCGTAAGAGAGTAACTTTTGACACCA 578
||||||||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 371 TTGAGGAGAAACAAAGTCCGAGTCCGAGTCCAAATCGTAAGAGAGTGACTTTCGACACCA 430
Query 579 ATGTTAAAACATATGAACACATTGCAGTAGATGAATCTGTTGAGCTCTTTGAAGAGAAGA 638
|||||| ||||||||||||||||| ||||| ||||||||||||||||||||| |||||||
Sbjct 431 ATGTTACAACATATGAACACATTGTAGTAGGTGAATCTGTTGAGCTCTTTGAGGAGAAGA 490
Query 639 AAGAAGAGGTGAAGTCGAGGCAGGCTCGATGTTCGTCTGAAGGGAGCGATGTTACTTCTA 698
|||||||||||||||||||||||| || | || | | | | ||| || |
Sbjct 491 AAGAAGAGGTGAAGTCGAGGCAGG--AGA-G--CG-AT--A-TTA-C-----TACGTCGA 535
Query 699 ACTCGTCAGGGTCTTATCCTTCTAACCATAGATATCAGAATTGCAGAGAGAGTGATGATG 758
|||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 536 ACTCGTCAGGGTCTTATCCTTCAAATCATAGATATCAGAATTGCAGAGAAAGTGATGATG 595
Query 759 AAGAGGAGGATGTAACGGATTGTGACGATAGCGATCTTGAGGATACTGATGATGATGATT 818
|||||||||||||||| || |||||||| |||||||||||||||| | ||||||||
Sbjct 596 AAGAGGAGGATGTAACAGACTGTGACGAAAGCGATCTTGAGGATA-T--TGATGATG--- 649
Query 819 GTGGGCTGCTAGATGATGACTATTATAATGATGACAATTATGAGGACAAGCTGCACAACT 878
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 650 GTGGGCTGCTTGATGAAGACTATTATAATGATGACAATTATGAGGATAAGCTGCATAACT 709
Query 879 GGGATAAAGTAGTTTATACGGAGGAGATTGCGGATAATGTTATGGATAT-AGAGAGGGTT 937
||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||
Sbjct 710 GGGATAAAGTAGTTTATACCGAGGAGATTGCGGATAATGTTATGGATATCA-AGAGGGTT 768
Query 938 GAAGAAAAGGGTAGTGTGAGTGTTAGAGACAGAAGTGGATATGTCAA-TGCAGTACTGAA 996
||||||||| ||| ||| |||| ||||||||| ||||| ||||| || | ||||||||||
Sbjct 769 GAAGAAAAGAGTAATGTCAGTGCTAGAGACAGGAGTGGGTATGTTAACT-CAGTACTGAA 827
Query 997 CCCGATTGAGAATCTTTCCCAATGGAAAGCTGTGAAAGCCAAAGGAAGAACAACAACTCA 1056
|||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 828 CCCGATCGAGAATCTTTCCCAATGGAAAGCTGTGAAATCCAAAGGAAG---AACAACTCA 884
Query 1057 AACACAGCCTCGGAAGGAGAATGTGATAATTGCTTCCTTCAGCTTGGAGTCTCAGGTTGA 1116
|||||||||||| |||||||||| ||||| ||||||||||||||||||| ||||||||||
Sbjct 885 AACACAGCCTCGTAAGGAGAATGCGATAAATGCTTCCTTCAGCTTGGAGCCTCAGGTTGA 944
Query 1117 TGATTTATCATCAACATTCAGCTTGAACCGGAAATCAAGAGATGAAACTGAGAAACAGAG 1176
||| ||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 945 TGAGTTATCATCATCATTCAGCTTGAACCAGAAATCAAGAGATGAAACTAAGAAACAGAG 1004
Query 1177 AACTCAAGAAATAGCTGTTGATGCTAGTCTTTCAACTTGGTTATCCACATCACAAACCAC 1236
|||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||
Sbjct 1005 AACTCAAGAAATAGCTGTTGATGCTAGTCTCTCAACTTGGTTATCCACACCACAGACCAC 1064
Query 1237 GACCAGCGGTTGTAGCAGTGTTGAAACCACAATGTCCGAGAAGAAGAAATACTCGAAACT 1296
| ||||||| || ||||||||||||||| ||||||| |||||||| |||||||||||||
Sbjct 1065 GGCCAGCGGATGCAGCAGTGTTGAAACCGCAATGTCTGAGAAGAATAAATACTCGAAACC 1124
Query 1297 GGTTCAATGCCATGATGAAAGACCTATATTGGGCGCGTTAACTGCAGAGGAGATAAAGCA 1356
||||||| |||| ||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1125 GGTTCAAAGCCACGATGAAAGACCTATACTGGGCGCATTAACTGCAGAGGAGATAAAGCA 1184
Query 1357 GTTCTCAGCTACGAATTCGCCAAGGAAATC---GCCAAGTAGAAGCCCTGAATCACCGAT 1413
||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| ||
Sbjct 1185 GTTCTCAGCTACGGATTCGCTAAGGAAATCATCGCCAAGTAGAAGCCCTGAATCACCAAT 1244
Query 1414 AATTGGAACAGTTGGTGGTTACTGGAACAGTCACTCAATGGCAACGAACAAGTACAGTCG 1473
||| |||||||| |||||||| ||||||| |||||||||||| || | |||||||||| |
Sbjct 1245 AATCGGAACAGTCGGTGGTTATTGGAACAATCACTCAATGGCCACCAGCAAGTACAGTTG 1304
Query 1474 AAGTTCTTAGAACTCCAATTCCACAACAGAGAAAGAATTCCACACATGTTTGGTTACTAC 1533
||| ||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1305 AAGCTCTTAAAACTCAAATTCTACAACAGAGAAACAATTCCACACATGTTTGGTTACTAA 1364
Query 1534 ATTGCCTTTGTGAAATTATTTTTATCACTCtgtttgtttgtgtgtgtgtggttgataaca 1593
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1365 ATTGCCTTTGTGAAATTATTTTCATCACTCTATTTGTTTGTGTGTGTGTGGTTGATAACC 1424
Query 1594 aaatcgttgtgtt 1606
||||||||||||
Sbjct 1425 TAATCGTTGTGTT 1437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64524875030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5