BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44060.1
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494590 jgi|Araly1|494590|fgenesh2_kg.8__406__AT5G44060.1 944 0.0
> Ahg494590 jgi|Araly1|494590|fgenesh2_kg.8__406__AT5G44060.1
Length=735
Score = 944 bits (511), Expect = 0.0
Identities = 671/745 (90%), Gaps = 24/745 (3%)
Strand=Plus/Plus
Query 106 aaaaaGCCTTCTCGGGTTGTTTAAAAATACTGTTTCACCGCAGTAATTAA-TTTAAAAAT 164
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1 AAAAAGCCTTCTCGGGTTGTCAAAAAATACTGTTTCACCGCAGTAATTAATTTTAAAAAT 60
Query 165 TACTGTCGATGACGTGGCATGCACTTAAAAAGAAACAGCCATGAATACAAAAACGATGCG 224
||||| || ||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 61 TACTGCCGCTGACGTGGCATGCACTTAAAAGGAAACAGTCATGAATACAAAAACGATGCG 120
Query 225 TCTTCCCCCACGCCGAGTTACCTCCGGCGCCGTCGCCGGCAAACAAACGGAATCCGCCGT 284
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTTCCCCCACGCCGAGTTATCTCCGGCGCCGTCGCCGGCAAACAAACGGAATCCGCCGT 180
Query 285 GATAAATCCACCACCGCCGCCGACTAAATCCA-TCGTCAAGAAAACGCCGATCATCCCTC 343
|||||||||||||||||||||| ||||||||| || |||||||||| |||| |||| ||
Sbjct 181 GATAAATCCACCACCGCCGCCGTCTAAATCCATTC-TCAAGAAAACTCCGACCATCGTTC 239
Query 344 GACCAACTACCACCGCCACTGTAGCCTTAGCCGAGCCGGTTTGTTCGAATC-AGCTCTTA 402
||||||| ||||||||| | | |||| ||| |||||||||| ||||||| | ||||||||
Sbjct 240 GACCAACAACCACCGCCGCCGCAGCCGTAGTCGAGCCGGTTGGTTCGAA-CAAGCTCTTA 298
Query 403 GCCGGTTACTTGGCTCATGAGTTTCTCAACAATGGCACACTCTTCGGAGAGCTTTGGAAT 462
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 299 GCCGGTTACTTGGCTCATGAGTTTCTCAGCAATGGCACACTCTTCGGAGAGCTTTGGAAT 358
Query 463 CCAACTAAAGCCCAAGCCGGCCCATTAACGACCCAATCTATTGACCCTAGAAAGAA-TAA 521
|| ||| |||||||||||||||||||||| |||||| || ||| | ||||| || |||
Sbjct 359 CCTACTCGAGCCCAAGCCGGCCCATTAACGGCCCAATGTACTGAGACGAGAAA-AACTAA 417
Query 522 GCCGAGCCATGATATAGAGCCGAGTGATCATAAACGGAGGAGATATGTGGAGGTTGCTAA 581
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 418 GCCGAGCCATGATATGGAGCCGAGTGATCAGAAACGGAGGAGGTATGTGGAGGTTGCTAA 477
Query 582 CATACTCCGGGTAGATGGGACCCATTTGCCCGGTATCGTTAACCCGTCACAGCTTGCCCG 641
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 478 CATACTCCGGGTAGATAGGACCCACTTGCCCGGTATCGTTAACCCGTCACAGCTTGCCCG 537
Query 642 ATTCCTTAAATTGTGATGCGTAAATCCACGTGGAGTCGTATTATTGGTTCGTCGTTTAGA 701
|||||||||||||||||||||||||||||||||| || | ||||||| |||||||||||
Sbjct 538 ATTCCTTAAATTGTGATGCGTAAATCCACGTGGAATCATCGTATTGGTCCGTCGTTTAGA 597
Query 702 AAAACAAAACAGCTGTAACACCGAAACATTCCTCTTCTCTATCTTTTATTTTT-TGTCCA 760
|||| || ||||||||||||| |||||||||||||||||| ||||| |||||| | |
Sbjct 598 AAAAGAAGACAGCTGTAACACAGAAACATTCCTCTTCTCTTTCTTTAATTTTTCT-T--- 653
Query 761 TTAATGtttttttGTAAAAAGC--TCTCTCTT-C---ATCGTCTTCATCGAA-A--TTGA 811
||||| |||| ||||| || ||||| || | ||||||||||||||| | ||||
Sbjct 654 TTAATATTTT---GTAAATTGCCATCTCTGTTTCTTTATCGTCTTCATCGAAGAAATTGA 710
Query 812 CTCAGAAATGTTTTAGGGttttttt 836
||||||||||||||||| |||||||
Sbjct 711 CTCAGAAATGTTTTAGGTTTTTTTT 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33395675292
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5