BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44070.1
Length=1783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948730 jgi|Araly1|948730|scaffold_800617.1 2361 0.0
Ahg333720 jgi|Araly1|333720|fgenesh1_pg.C_scaffold_1000285 791 0.0
> Ahg948730 jgi|Araly1|948730|scaffold_800617.1
Length=1500
Score = 2361 bits (1278), Expect = 0.0
Identities = 1427/1500 (95%), Gaps = 5/1500 (0%)
Strand=Plus/Plus
Query 122 AAAACAAGCAGTG-AAAAATGGCTATGGCGAGTTTATATCGGCGATCTCTTCCTTCTCCT 180
||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 AAATCAAGCCGTGTAAAAATGGCTATGGCGAGTTTATATCGGCGATCTCTTCCTTCTCCT 62
Query 181 CCGGCCATTGACTTTTCTTCCGCCGAAGGCAAGCTAATCTTCAATGAAGCGCTTCAGAAA 240
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 63 CCGGCGATTGACTTTTCTTCTGCCGAAGGCAAGCTAATCTTCAATGAAGCGCTTCAGAAA 122
Query 241 GGAACTATGGAAGGATTTTTCAGGTTGATTTCGTATTTTCAGACACAATCCGAACCTGCG 300
|||||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct 123 GGAACTATGGAAGGATTTTTCAGGTTGATTTCGTATTTTCAGACGCAGTCTGAACCTGCG 182
Query 301 TATTGTGGTTTGGCTAGTCTCTCAGTGGTGTTGAATGCTCTTTCTATCGATCCTGGACGT 360
|||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct 183 TATTGTGGCTTGGCTAGTCTTTCTGTGGTGTTGAATGCTCTTTCTATTGATCCTGGACGC 242
Query 361 AAATGGAAAGGGCCTTGGAGGTGGTTTGATGAATCAATGTTGGATTGCTGCGAACCTCTG 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 243 AAATGGAAAGGGCCTTGGAGGTGGTTTGATGAATCAATGTTGGACTGCTGCGAGCCTCTT 302
Query 421 GAAGTAGTGAAGGAAAAAGGCATTTCATTTGGAAAAGTTGTCTGTTTGGCTCATTGTTCA 480
||||| |||||||| || || ||||||||||| |||||||||||||||||||||||||||
Sbjct 303 GAAGTGGTGAAGGAGAAGGGAATTTCATTTGGGAAAGTTGTCTGTTTGGCTCATTGTTCA 362
Query 481 GGAGCAAAAGTTGAGGCTTTCCGTACAAGTCAGAGCACCATTGATGATTTCCGCAAATTT 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 363 GGAGCAAAAGTTGAGGCTTTCCGTACAAGTCAGAGCACCATTGAGGATTTCCGCAAATTT 422
Query 541 GTCGTCAAATGCACGAGTTCTGAGAATTGTCATATGATCTCAACATATCACCGAGGTGTA 600
||| | ||||||||||||||||||||||| |||||||||||| |||||||| |||||||
Sbjct 423 GTCTTGAAATGCACGAGTTCTGAGAATTGCCATATGATCTCATCATATCACAGAGGTGTT 482
Query 601 TTTAAGCAGACTGGGACTGGTCACTTTTCACCTATTGGTGGCTATAATGCTGAGAGAGAT 660
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 TTTATGCAGACTGGGACTGGTCACTTTTCACCTATTGGTGGCTATAATGCTGAGAGAGAT 542
Query 661 ATGGCTTTGATTCTTGATGTTGCTCGTTTCAAGTATCCCCCTCACTGGGTTCCTCTTAAA 720
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 543 ATGGCTTTGATTCTTGATGTTGCTCGTTTCAAGTATCCTCCTCACTGGGTTCCTCTTAAA 602
Query 721 CTTCTTTGGGAAGCCATGGACAGTATTGATCAGTCAACAGGGAAACGTAGAGGGTTCATG 780
||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||
Sbjct 603 CTTCTTTGGGAAGCCATGGACAGCATTGATGAGTCAACTGGGAAACGTAGAGGGTTCATG 662
Query 781 CTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCTGAGCTGCAAGGATGAA 840
|||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 663 CTCATATCTAGACCCCACCGAGAACCCGGATTGCTCTATACTTTGAGCTGCAAGGATGAA 722
Query 841 AGCTGGATCGAAATAGCCAAGTATTTGAAGGAAGATGTTCCTCGTCTTGTAAGTTCACAG 900
||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 723 AGCTGGATCGACATAGCAAAGTATTTGAAGGAAGATGTTCCACGTCTTGTAAGTTCACAA 782
Query 901 CATGTAGATTCTGTGGAGAAAATCATATCAGTTGTGTTCAAGTCACTTCCATCAAATTTC 960
|||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 783 CATGTAGACTCTGTGGACAAAATCATATCTGTTGTGTTCAAGTCACTTCCATCAAACTTC 842
Query 961 AACCAATTCATCAGATGGGTGGCTGAGATCCGAATTACAGAGGACTCAAACCAAAATCTC 1020
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||
Sbjct 843 AACCAATTCATCAGATGGGTGGCTGAGATCAGAATAACAGAGGACTCAAACCAAATTCTC 902
Query 1021 AGCGCAGAGGAGAAGTCTA-GGCTGAAACTAAAGCAATTGGTGCTGAAGGAAGTGCACGA 1079
||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||
Sbjct 903 AGCGCAGAGGAGAAGTC-ACGGCTGAAACTAAAGCAATTGGTGCTGAAAGAAGTGCACGA 961
Query 1080 AACTGAACTGTTCAAACACATCAATAAGTTCTTATCCACAGTGGGTTATGAAGACAGTCT 1139
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 962 AACTGAACTGTTCAAACACATCAATAAGTTCTTATCCTCAGTGGGTTACGAAGACAGTCT 1021
Query 1140 GACTTATGCTGCTGCAAAGGCTTGTTGCCAAGGAGCTGAAATCTTATCCGGAAGCCCATC 1199
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1022 GACATATGCTGCTGCAAAGGCTTGTTGCCAAGGAGCTGAAATCTTATCTGGAAGCCCATC 1081
Query 1200 AAAAGAGTTTTGTTGTCGGGAAACTTGCGTGAAATGCATCAAAGGTCCTGATGACTCTGA 1259
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1082 AAAAGAGTTCTGTTGTCGGGAAACTTGTGTGAAATGCATCAAAGGTCCTGATGACTCTGA 1141
Query 1260 AGGCACGGTGGTGACTGGAGTTGTGGTGCGTGATGGGAATGAACAAAAGGTTGATCTGTT 1319
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1142 AGGCACGGTGGTGACTGGAGTTGTGGTGCGTGATGGGAGTGAACAAAAGATTGATCTGTT 1201
Query 1320 AGTGCCATCGACGCAAACTGAGTGTGAATGTGGTCCTGAAGCAACTTATCCAGCAGGAAA 1379
||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1202 GGTGCCATCGACCCAAACTGAGTGTGAATGTGGTCCGGAAGCAAATTATCCAGCAGGAAA 1261
Query 1380 CGATGTGTTCACTGCACTTCTATTGGCTTTACCTCCACAGACATGGTCAGGGATCAAAGA 1439
||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1262 CGATGTGTTTACTGCACTTCTGTTGGCTTTGCCTCCACAGACATGGTCAGGGATCAAAGA 1321
Query 1440 CCAAGCTCTTATGCATGAAATGAAGCAGCTCATTTCCATGGCTTCCCTCCCAACTTTGCT 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 CCAAGCTCTTATGCATGAAATGAAGCAGCTCATTTCCATGGCTTCCCTCCCAACTTTGCT 1381
Query 1500 TCAAGAAGAGGTATTGCATCTTCGACGGCAACTTCAGCTGCTAAAACGATGCCAAGAGAA 1559
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1382 TCAAGAAGAGGTATTGCATCTTCGACGACAACTTCAGCTGCTAAAACGATGCCAAGAGAA 1441
Query 1560 CAAGGAAGAGGATGATCTCGCTGCTCCTGCCTATT-AGTTCATTGTCCCAAATCCTCTCT 1618
||| |||||||| |||||||||||||||||||||| | ||||| ||||||||| | ||||
Sbjct 1442 CAAAGAAGAGGAAGATCTCGCTGCTCCTGCCTATTGA-TTCATCGTCCCAAATTCACTCT 1500
> Ahg333720 jgi|Araly1|333720|fgenesh1_pg.C_scaffold_1000285
Length=1248
Score = 791 bits (428), Expect = 0.0
Identities = 603/688 (88%), Gaps = 10/688 (1%)
Strand=Plus/Plus
Query 139 ATGGCTATGGCGAGTTTATATCGGCGATCTCTT-CCTTCTCCTCCGGCCATTGACTTT-T 196
||| ||||||||||||| ||||||||||||||| || || || ||||| || || |||
Sbjct 1 ATGTCTATGGCGAGTTTGTATCGGCGATCTCTTACC-TCCCCGCCGGCGATAGA-TTTCG 58
Query 197 CTTCCGCCGAAGGCAAGCTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGAT 256
|||| | |||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 59 CTTCTGTTGAAGGCAAGCAAATCTTCAATGAAGCGCTTCAGAAAGGCACTATGGAAGGAT 118
Query 257 TTTTCAGGTTGATTTCGT-ATTTTCAGACACAATCCGAACCTGCGTATTGTGGTTTGGCT 315
|||||||| ||||||| | |||||||||| || || || || || | |||||| || |||
Sbjct 119 TTTTCAGGCTGATTTC-TAATTTTCAGACTCAGTCTGAGCCAGCTTTTTGTGGGTTAGCT 177
Query 316 AGTCTCTC-AGTGGTGTTGAATGCTCTTTCTATCGATCC-TGGACGTAAATGGAAAGGGC 373
||||| || | |||| |||||| |||||||||| || || ||| | |||||||||||||
Sbjct 178 AGTCTTTCTA-TGGTTTTGAATTCTCTTTCTATTGACCCGGGGA-GAAAATGGAAAGGGC 235
Query 374 CTTGGAGGTGGTTTGATGAATCAATGTTGGATTGCTGCGAACCTCTGGAAGTAGTGAAGG 433
|||||||||||||||||||||||||| |||| || ||||| || || ||| |||||||||
Sbjct 236 CTTGGAGGTGGTTTGATGAATCAATGCTGGAATGTTGCGAGCCCCTTGAAATAGTGAAGG 295
Query 434 AAAAAGGCATTTCATTTGGAAAAGTTGTCTGTTTGGCTCATTGTTCAGGAGCAAAAGTTG 493
| ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||| |
Sbjct 296 ATAAAGGCATTTCGTTTGGTAAAGTTGTCTGTTTGGCTCATTCTTCAGGAGCAAAAGTCG 355
Query 494 AGGCTTTCCGTACAAGTCAGAGCACCATTGATGATTTCCGCAAATTTGTCGTCAAATGCA 553
| |||||||| |||| |||||||||||||||||||||||||||| || ||||||||
Sbjct 356 AAGCTTTCCGCACAAACCAGAGCACCATTGATGATTTCCGCAAATACGTGGTCAAATGTT 415
Query 554 CGAGTTCTGAGAATTGTCATATGATCTCAACATATCACCGAGGTGTATTTAAGCAGACTG 613
| | |||||| |||||||||||||||||||||||||| ||| ||| | ||||||||||
Sbjct 416 CCACTTCTGATAATTGTCATATGATCTCAACATATCATAGAGAAGTACTCAAGCAGACTG 475
Query 614 GGACTGGTCACTTTTCACCTATTGGTGGCTATAATGCTGAGAGAGATATGGCTTTGATTC 673
| || || || ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 476 GAACAGGCCATTTTTCACCTATTGGTGGTTATAATGCTGAAAGAGATATGGCTTTGATTC 535
Query 674 TTGATGTTGCTCGTTTCAAGTATCCCCCTCACTGGGTTCCTCTTAAACTTCTTTGGGAAG 733
||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 536 TTGATGTCGCTCGTTTCAAGTATCCTCCTCACTGGGTTCCACTTAAACTTCTTTGGGATG 595
Query 734 CCATGGACAGTATTGATCAGTCAACAGGGAAACGTAGAGGGTTCATGCTCATATCTAGAC 793
|||||||||||||||||||||| ||||||| |||||||||||||||||| ||||| ||||
Sbjct 596 CCATGGACAGTATTGATCAGTCGACAGGGAGACGTAGAGGGTTCATGCTTATATCCAGAC 655
Query 794 CACACAGAGAACCCGGATTGCTCTATAC 821
| ||||||||||| ||||||||||||||
Sbjct 656 CCCACAGAGAACCAGGATTGCTCTATAC 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66924560465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5