BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44080.1
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494588 jgi|Araly1|494588|fgenesh2_kg.8__404__AT5G44080.1 1371 0.0
Ahg924174 jgi|Araly1|924174|scaffold_105455.1 220 1e-56
Ahg889435 jgi|Araly1|889435|Al_scaffold_0007_1421 220 1e-56
> Ahg494588 jgi|Araly1|494588|fgenesh2_kg.8__404__AT5G44080.1
Length=1158
Score = 1371 bits (742), Expect = 0.0
Identities = 932/1016 (92%), Gaps = 44/1016 (4%)
Strand=Plus/Plus
Query 223 TTCGTCTATAAGACCTCAACAACAGTTCCGGCGAGATCTAACAAGTGTCGGTTACGGCGG 282
|||||||||||||||||||| ||||||| |||||||||| || |||| |||||||||||
Sbjct 162 TTCGTCTATAAGACCTCAACTACAGTTCAGGCGAGATCTCACTAGTGGCGGTTACGGCGT 221
Query 283 AAGAAACGACGG---ATTATACAGTTCAAATTCGATGACGGTCGAAGGGATTTTACACGA 339
|||||||||||| |||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 222 AAGAAACGACGGATTATTATATAGTTCAAATTCGATGACGGTGGAAGGAATTTTACACGA 281
Query 340 TACTTTCGCATCAGATCCACCAGCACCAACGGAATCTTCAC-TCTTAGATGCGTCGATAA 398
||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||
Sbjct 282 TACTTTCGCATCAGATCCACCAGCACCAACGGAATCTTCACTTC-TAGATGCTTCGATAA 340
Query 399 ATCTGATGGATGCTTCTCCAGCACCAATGGAGATAACAACAACGACGGCTTCTGATGTTG 458
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 341 CTCTGATGGATGCTTCTCCAGCACCAATGGAGAT---AACAACGACGGTTTCTGATGTTG 397
Query 459 TGGAT--C-ACGGCGGAGGAACGGAGACGACGCGTGGTGGGAAGAGTGTTGATGAGATTT 515
||||| | |||||||||| |||||||||||| ||||||||||||||||||||||| |||
Sbjct 398 TGGATCGCGACGGCGGAGGGACGGAGACGACGTGTGGTGGGAAGAGTGTTGATGAGGTTT 457
Query 516 GGAGAGAGATGGTATCAGGAG-AAGGTAAAGGGATGAAGGAAGAGACGTC-GGAAGAGAT 573
||||||||||||||||||||| |||| ||||| ||||||||||||||| | ||||||||
Sbjct 458 GGAGAGAGATGGTATCAGGAGAAAGG-AAAGGTATGAAGGAAGAGACG-CAAGAAGAGAT 515
Query 574 AATGACGTTAGAGGATTTTCTAGCGAAAGCTGCGGTGGAAGACGAAACAGCGGTGACGGC 633
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 516 AATGACGTTAGAGGATTTTCTAGCGAAAGCTGCGGTGGAAGATGAAACAGC---GA---- 568
Query 634 GTCGGCGGAGGATTTGGATGTGAAGATTCCG--G-TGACGAATTACGGATTCGATCATTC 690
||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||
Sbjct 569 --CGGCGGAGGATTTAGATGTGAAGATTCCGCCGACGACGAATTACGGATTCGATCATTC 626
Query 691 TGCACCGCCGCATAATCCGTTTCAGATGATTGATAAAGTAGAAGGATCAATAGTTGCGTT 750
||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 627 TGCGCCGCCGCATAATCCGTTTCAGATGATTGATAAAGTGGAAGGATCAATTGTTGCGTT 686
Query 751 TGGGAATGGTTTAGATGTTTA------CGGAGG-A--GGA-G-CT-AGAGGGAAGAGAGC 798
||||||||||||||||||||| ||||| | ||| | | ||||||||||||||
Sbjct 687 TGGGAATGGTTTAGATGTTTATGGTGGAGGAGGAAGTGGAGGAGTGAGAGGGAAGAGAGC 746
Query 799 GAGAGTGATGGTTGAGCCATTGGATAAAGCAGCTGCACAGAGACAGAGAAGGATGATTAA 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 GAGAGTGATGGTTGAGCCATTGGATAAAGCAGCTGCACAGAGACAGAGAAGGATGATTAA 806
Query 859 GAATCGTGAATCTGCAGCTAGGTCTAGAGAGAGGAAACAAGCTTATCAAGTTGAGTTAGA 918
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 GAATCGTGAATCTGCGGCTAGGTCTAGAGAGAGGAAACAAGCTTATCAAGTTGAGTTAGA 866
Query 919 AGCTTTGGCTGCGAAGCTTGAGGAAGAGAATGAGTTGCTTTCTAAGGAGATTGAAGATAA 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 867 AGCTTTGGCTGCGAAGCTTGAGGAAGAGAATGAGTTGCTTTCTAAGGAGATTGAAGAGAA 926
Query 979 GAGGAAAGAGAGATACCAGAAGTTGATGGAGTTTGTGATTCCTGTTGTTGAGAAACCGAA 1038
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 927 GAGGAAAGAGAGATACCAGAAGTTGATGGAGTTTGTGATTCCTGTGGTTGAGAAACCGAA 986
Query 1039 GCAGCAGCCACCACGGTTTTTACGCAGGATTCGGTCTTTGGAATGGTGATAAGAGGTATA 1098
|||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 987 GCAGCAACCACCGCGGTTTTTACGCAGGATTCGGTCTTTGGAATGGTGATAA-AGGTATA 1045
Query 1099 GACTTTTGAGGATTTTAGGGTCT-TAATGTTACTTACTTTGTGTATGTGTGTGTGAGAGT 1157
||||||||||||||||||| | | ||| ||||||| | | ||| |||||||| ||||||
Sbjct 1046 GACTTTTGAGGATTTTAGGATTTCTAAGGTTACTTTGTGTATGT-TGTGTGTGAGAGAGT 1104
Query 1158 TGATTCATAATCTGCAGTAGAGTGTAATGATTATGGTTAATAACTTATATATTATA 1213
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1105 --ATTCATAATCTGCAGCAGAGTGTAATGATTATGGTTAATAACTTAAATATTATA 1158
Score = 226 bits (122), Expect = 3e-58
Identities = 150/163 (92%), Gaps = 3/163 (2%)
Strand=Plus/Plus
Query 36 AAAGTTCAACATTTGGCGGAGTCAAAGA-AACAGAGTGATTCTCTGATCCGATTCCGGCG 94
||| ||||| ||||||| |||||||||| | | |||||||||||||||||||||||||||
Sbjct 1 AAATTTCAAAATTTGGCCGAGTCAAAGATATC-GAGTGATTCTCTGATCCGATTCCGGCG 59
Query 95 AAAGAGGACGAAACAAACGGAACTTGTTCATCATCTTCTCCAGAAA-TGACGTCGTTTCA 153
||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||
Sbjct 60 AAAGAGGACGAAACAAACGGAGCTTGTTCATCATCATCTCCAGAAAATGACGTCGTTTCA 119
Query 154 GGTGATGCGTTCTTCAAATTCGAGAAACTCGGATCTATCTCGT 196
||||||||| ||| |||| || |||||||||||||||||||||
Sbjct 120 GGTGATGCGGTCTACAAACTCTAGAAACTCGGATCTATCTCGT 162
> Ahg924174 jgi|Araly1|924174|scaffold_105455.1
Length=278
Score = 220 bits (119), Expect = 1e-56
Identities = 207/247 (84%), Gaps = 15/247 (6%)
Strand=Plus/Plus
Query 785 AGAGGGAAGAGAGCGAGAGTGATGGTTG-AGCCATTGGATAAAGCAGCTGCACAGAGACA 843
||||| ||||||| ||||||||| | | || || |||||||||| || || || |||||
Sbjct 3 AGAGGAAAGAGAGGGAGAGTGAT-GACGAAGGCAATGGATAAAGCTGCAGCTCAAAGACA 61
Query 844 G-AGAAGGATGATTAAGAATCGTGAATCTGCAGCTAGGTCTAGAGAGAGGAAACAAGCTT 902
| || |||||||| ||||| |||||||| || ||||||||| ||||||||||||||||||
Sbjct 62 GAAG-AGGATGATCAAGAACCGTGAATCCGCTGCTAGGTCTCGAGAGAGGAAACAAGCTT 120
Query 903 ATCAAGTTGAGTTAGA-AGCTTTGGCTGCGAAGCTT-GAGGAAGAGAATGAGTTGCTTTC 960
|||||||||||||||| | ||||||||||||| || ||||||| ||||||| |||||
Sbjct 121 ATCAAGTTGAGTTAGAGA-CTTTGGCTGCGAAA-TTAGAGGAAGGGAATGAGAAGCTTT- 177
Query 961 T-AAGGAGATTGAAGATAAG-AGGAAAGAGAGATACCAGAAGTTGATGGA-GTTTGTGAT 1017
| |||||||||||||| | | | |||||||||||| ||||| | ||||| |||| ||||
Sbjct 178 TGAAGGAGATTGAAGAGA-GCACTAAAGAGAGATACAAGAAGCTCATGGACGTTT-TGAT 235
Query 1018 TCCTGTT 1024
||| |||
Sbjct 236 TCC-GTT 241
> Ahg889435 jgi|Araly1|889435|Al_scaffold_0007_1421
Length=792
Score = 220 bits (119), Expect = 1e-56
Identities = 216/260 (83%), Gaps = 17/260 (7%)
Strand=Plus/Plus
Query 773 GGAGGAGGAGCT-AGAGGGAAGAGAGCGAGAGTGATGGTTG-AGCCATTGGATAAAGCAG 830
||||||||| | ||||| ||||||| ||||||||| | | || || |||||||||| |
Sbjct 58 GGAGGAGGA-ATGAGAGGAAAGAGAGGGAGAGTGAT-GACGAAGGCAATGGATAAAGCTG 115
Query 831 CTGCACAGAGACAG-AGAAGGATGATTAAGAATCGTGAATCTGCAGCTAGGTCTAGAGAG 889
| || || |||||| || |||||||| ||||| |||||||| || ||||||||| |||||
Sbjct 116 CAGCTCAAAGACAGAAG-AGGATGATCAAGAACCGTGAATCCGCTGCTAGGTCTCGAGAG 174
Query 890 AGGAAACAAGCTTATCAAGTTGAGTTAGA-AGCTTTGGCTGCGAAGCTT-GAGGAAGAGA 947
||||||||||||||||||||||||||||| | ||||||||||||| || ||||||| ||
Sbjct 175 AGGAAACAAGCTTATCAAGTTGAGTTAGAGA-CTTTGGCTGCGAAA-TTAGAGGAAGGGA 232
Query 948 ATGAGTTGCTTTCT-AAGGAGATTGAAGATAAG-AGGAAAGAGAGATACCAGAAGTTGAT 1005
||||| ||||| | |||||||||||||| | | | |||||||||| | ||||| | ||
Sbjct 233 ATGAGAAGCTTT-TGAAGGAGATTGAAGAGA-GCACTAAAGAGAGATTCAAGAAGCTCAT 290
Query 1006 GGA-GTTTGTGATTCCTGTT 1024
||| |||| ||||||| |||
Sbjct 291 GGACGTTT-TGATTCC-GTT 308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45633131649
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5