BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44090.1
Length=2463
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494587 jgi|Araly1|494587|fgenesh2_kg.8__403__AT5G44090.1 3055 0.0
Ahg470372 jgi|Araly1|470372|fgenesh2_kg.1__326__AT1G03960.1 1683 0.0
Ahg914801 jgi|Araly1|914801|Al_scaffold_0001_5055 520 3e-146
> Ahg494587 jgi|Araly1|494587|fgenesh2_kg.8__403__AT5G44090.1
Length=1996
Score = 3055 bits (1654), Expect = 0.0
Identities = 1810/1885 (96%), Gaps = 12/1885 (1%)
Strand=Plus/Plus
Query 444 TTTGTTGTAGTTCTGATTCTCAGTGAATAAGATAGAAGATAATCATGGAAATCGATGGTG 503
|||||||| |||||| ||| |||||||||||||| || | |||||||||||||||||||
Sbjct 122 TTTGTTGTCGTTCTGGTTCACAGTGAATAAGATA-AA-A-GATCATGGAAATCGATGGTG 178
Query 504 -GAAACGATGTTCAGATTTTGGATCCTGAGCTCTTGCAGCTTCCCGGTTTGTCTCCTGTA 562
| ||||||||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 179 TG-AACGATGTTCAGATTTTGGATCCTGAGCTTTTACAGCTTCCGGGTTTGTCTCCTGTA 237
Query 563 TCACTTAAAGAAAATCCTCATATTGCTGAAGAACTCTTCTCCCAGTGGCTTTCACTTCCT 622
|||||||||| ||| ||||||||||||||||||||||||||||||||||| || || |||
Sbjct 238 TCACTTAAAGCAAACCCTCATATTGCTGAAGAACTCTTCTCCCAGTGGCTATCGCTCCCT 297
Query 623 GAAACTGGCCGATTGGTCAAGTCTTTAATTGATGATACTAAATCTAGTACCCCAGTCAGT 682
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 298 GAAACTGGCCGATTGGTCAAGTCGTTAATTGATGATACTAAATCGAGTACCCCAGTTAGT 357
Query 683 GTATCCAAAAATTGTACTAGTCTCAATGTTGCTTGCGGGAGTGCATTGCCATCTGTTTTT 742
|| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 358 GTGTCCAAGAATTGTACCAGTCTCAATGTTGCTTGCGGAAGTGCATTGCCATCTGTGTTT 417
Query 743 CTGAACAGCGGCACTCCCCCACTATCCCCACGAGGCTCACCTGGGTCTCCCCGTTTCTCG 802
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CTGAACAGCGGCACGCCCCCACTATCCCCACGAGGCTCACCTGGGTCTCCCCGTTTCTCG 477
Query 803 AGGCAAAAGACAAGCCCTTCTCTACAGTCTCCTCTGAAATCAGTCAGGGAACCAAAGCGC 862
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 478 AGGCAAAAGACAAGCCCTTCTCTACAGTCTCCTCTGAAATCAGTCAGAGAACCAAAGCGC 537
Query 863 CAACTCATTCCACAGTTTTACTTCCAACATGGACGTCCACCTGCGAAGGAACTAAGGGAG 922
||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 538 CAACTCATTCCTCAGTTTTACTTCCAACATGGGCGTCCACCTGCGAAAGAACTAAGGGAG 597
Query 923 CAATGTATATCCATGGTTGATCAATTTTTTAGTAACTATATAGACGGACTTCATATGGAT 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CAATGTATATCCATGGTTGATCAATTTTTTAGTAACTATATAGACGGACTTCATATGGAT 657
Query 983 GAATTCAAATCCATTACTAAAGAAGTCTGCAAGCTGCCTTCTTTTCTTTCCTCTGTACTA 1042
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 658 GAATTCAAATCCATTACTAAAGAAGTCTGCAAGCTGCCTTCTTTTCTTTCTTCTGTACTA 717
Query 1043 TTTAGAAAGATAGACACGAGTGGCACCGGTATCGTTACAAGGGATGCATTTATCAAGTAT 1102
|||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 718 TTTAGAAAGATAGATACGAGTTGCACTGGTATCGTTACAAGGGATGCATTTATCAAGTAT 777
Query 1103 TGGGTTGATGGACATATGTTGGCAATGGACGTAGCCTCACAGATATATAATATTTTAAGG 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 778 TGGGTTGATGGACATATGTTGGCAATGGACGTAGCCTCACAGATATATAATATTTTACGG 837
Query 1163 CAGCCAGGTTGCAAGTACCTTAGACAGGCTGACTTCAAACCAGTTCTTGATGAGCTTCTG 1222
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 838 CAGCCAGGTTGCAAGTACCTTAGACAGGCTGACTTCAAACCAGTTCTTGAAGAGCTTCTG 897
Query 1223 ACAACTCATCCCGGCTTGGAATTCCTGAGGAATACACCTGAGTTTCAAGAAAGATATGCT 1282
||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 898 ACAACTCATCCTGGCTTGGAATTCCTCAGGAATACACCTGAATTTCAAGAAAGATATGCT 957
Query 1283 GAGACCGTCATCTACAGAATATTTTACTACATAAACAGATCAGGTACTGGTTGCATTACT 1342
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GAGACCGTCATCTACAGAATATTTTACTACATAAACAGATCAGGTACTGGTTGCATTACC 1017
Query 1343 CTTAGAGAGCTGAAGCGTGGGAATCTTATTACTGCCATGCAACAAGTTGATGAAGAAGAC 1402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CTTAGAGAGCTGAAGCGTGGGAATCTTATTACTGCCATGCAACAAGTTGATGAAGAAGAC 1077
Query 1403 GACATCAATAAAGTTATTAGGTACTTCTCCTATGAGCATTTCTACGTGATATACTGCAGA 1462
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1078 GACATCAATAAAGTTATTAGGTACTTCTCCTATGAGCATTTCTACGTTATATACTGCAGA 1137
Query 1463 TTTTGGGAACTCGATGGCGACCATGATTTCCTTATTGATAAGGAAAATCTCATCAAATAT 1522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TTTTGGGAACTCGATGGCGACCATGATTTCCTTATTGATAAGGAAAATCTCATCAAATAT 1197
Query 1523 GGTAATCATGCCCTTACCTACAGGATTGTCGACAGAATATTTTCACAGGTTCCTAGGAAA 1582
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1198 GGTAATCATGCACTTACCTACAGGATTGTCGACAGAATATTTTCACAGGTCCCTAGGAAA 1257
Query 1583 TTTACAAGCAAAGTTGAGGGGAAGATGAGTTATGAAGATTTTGCATACTTTATTCTCGCT 1642
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1258 TTTACAAGCAAAGTTGAGGGGAAGATGAGTTATGAAGATTTTGCATACTTCATTCTCGCT 1317
Query 1643 GAGGAGGATAAGTCATCTGAGCCTAGTCTTGAGTATTGGTTCAAGTGCATAGACCTAGAT 1702
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1318 GAGGAGGATAAGTCATCTGAGCCTAGTCTTGAGTATTGGTTCAAGTGCATAGACCTGGAT 1377
Query 1703 GGAGATGGGGTGATCACTCCCAACGAGATGCAGTTTTTCTACGAAGAGCAGCTGCATCGC 1762
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1378 GGAGATGGGGTGATCACTCCCAACGAAATGCAGTTTTTCTACGAAGAGCAGCTGCATCGC 1437
Query 1763 ATGGAATGTATAACCCAGGAACCTGTACTCTTTGAAGATATCCTATGTCAAATATTCGAC 1822
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 ATGGAATGTATAACTCAGGAACCTGTACTCTTTGAAGATATCCTATGTCAAATATTCGAC 1497
Query 1823 ATGATTAAACCAGAGAAGGAGAACTGCATCACACTCCAGGATCTGAAAGCATCCAAACTT 1882
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1498 ATGATTAAACCAGAGAAGGAGAACTGCATCACACTCCAGGATCTGAAAGCATCTAAACTT 1557
Query 1883 TCTGGAAATATTTTCAATATACTCTTTAACCTGAACAAATTCATGGCGTTTGAAACCCGT 1942
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1558 TCTGGAAATATTTTCAATATACTCTTCAACCTGAACAAATTCATGGCTTTTGAAACCCGT 1617
Query 1943 GACCCTTTTCTCATTCGTCAGGAACGTGAGAATCCAACATTGACGGAATGGGACCGATTT 2002
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 GACCCTTTTCTCATTCGCCAGGAACGTGAGAATCCAACATTGACGGAATGGGACCGATTT 1677
Query 2003 GCTCAGAGAGAGTATGTGAGGTTGTCAATGGAGGAAGATGTGGAGGAAGTCTCGAATGGG 2062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 GCTCAGAGAGAGTATGTGAGGTTGTCAATGGAGGAAGATGTGGAGGAAGTCTCGAATGGG 1737
Query 2063 AGTGCAGATGTTTGGGATGAACCACTCGAATCTCCATTTTAGTGACTCGTAAGAGTTTCT 2122
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1738 AGTGCAGATGTCTGGGATGAACCACTCGAGTCTCCATTTTAGTGACTCGTAAGAGTTTCT 1797
Query 2123 TGGGAAGAAGAGGGAGAAGTCAGATCTTCTTGGGTGGTAAGAGCCTCGGAAACAATTTTC 2182
||||||||||| | ||| |||||||||||||||||||||| || ||||||||||| | ||
Sbjct 1798 TGGGAAGAAGAAGAAGAGGTCAGATCTTCTTGGGTGGTAACAGACTCGGAAACAACTCTC 1857
Query 2183 AGACAGACAACCACGAAAGCCAGTCCATTCCACGGTTCCACCTAGAGATTGGCGACCA-A 2241
||||| || | |||||||| ||||| ||||||||||||||||||| ||||||||||| |
Sbjct 1858 AGACA-AC--C-ACGAAAGCTAGTCCCTTCCACGGTTCCACCTAGAAATTGGCGACCACA 1913
Query 2242 GAGACTTATCCGATGCGTAAGCTTGTGTTAGTTTCATGAAATATTTGTCTTGCTTAGGTT 2301
|||||| || || |||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1914 -AGACTTCTCTGAGGCGTAAGCTTGTGTTA-TTGCATGAAATATTTGTCTTGCTTAGGTT 1971
Query 2302 TCTCAGGTTGGACCCTCTTTCAATC 2326
| |||||||||||||||||||||||
Sbjct 1972 TTTCAGGTTGGACCCTCTTTCAATC 1996
Score = 69.4 bits (37), Expect = 1e-10
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 385 AAGAAATTAGGGTTTCGATCCAATTTTAGAATTGACT 421
|||||||||||||||||||||||||||||||||||||
Sbjct 86 AAGAAATTAGGGTTTCGATCCAATTTTAGAATTGACT 122
> Ahg470372 jgi|Araly1|470372|fgenesh2_kg.1__326__AT1G03960.1
Length=1959
Score = 1683 bits (911), Expect = 0.0
Identities = 1407/1644 (86%), Gaps = 43/1644 (3%)
Strand=Plus/Plus
Query 485 ATCATGGAAATCGATGGTGGAAACGATGTTCAGATTTTGGATCCTGAGCTCTTGCAGCTT 544
|||||||| || || || | | |||||||||| ||||| ||||||||||||||||||||
Sbjct 328 ATCATGGATATTGACGGAGTAGACGATGTTCATATTTTAGATCCTGAGCTCTTGCAGCTC 387
Query 545 CCCGGTTTGTCTCCTGTAT-CACTTAAAGAAAATC-CTCATATTGCTGAAGAACTCTTCT 602
|||||||| | ||||| | | | | ||| || | |||||||||| || ||||||||||
Sbjct 388 CCCGGTTTATATCCTG-CTCCGC-TCAAGCCAAGCTCTCATATTGCCGATGAACTCTTCT 445
Query 603 CCCAGTGGCTTTCACTTCCTGAAACTGGCC-GATTGGTCAAGTCTTTAATTGATGATACT 661
| |||||||| ||||| ||||||||| ||| |||||||||||||||| ||||||||| ||
Sbjct 446 CTCAGTGGCTCTCACTCCCTGAAACT-GCCAGATTGGTCAAGTCTTTGATTGATGATGCT 504
Query 662 AAATCTAGTAC-CCCAGTCAGTGTATCCAAAAATTGTACTAGTCTCAATGTTGCTTGC-G 719
|||||| | || || | | | | ||||||| |||| | | | | || || || || | |
Sbjct 505 AAATCTGGAACACCAACT-AATTTATCCAAGAATTATGCCA--C-CACTGATGTTTCCGG 560
Query 720 -GG-AGTGCATTGCCAT-CTGTTTTTCTGAACAGCGGCACTCCCCCACTATCCCCACGAG 776
|| ||||| ||||| | |||| ||||||| |||| |||||||||| ||||| ||||||
Sbjct 561 TGGAAGTGCTTTGCC-TGCTGTGTTTCTGAGCAGCAGCACTCCCCCGCTATCTCCACGAA 619
Query 777 GCTCACCTGGGTCTCCC-CGTTTCTCGAGGCAAAAGACAAG--C-CCTTCTCTACAGTCT 832
|||| ||||||| ||| |||||||||||||||| ||| || | |||||||| ||||||
Sbjct 620 GCTCGTCTGGGTC-CCCTCGTTTCTCGAGGCAAAGGACTAGCCCTCCTTCTCTCCAGTCT 678
Query 833 CCTCTGAAATCAGTCAGGGAACCAAAGCGCCAACTCATTCCACAGTTTTACTTCCAACAT 892
|||||| |||| ||| ||| || |||| |||||||||| ||||| |||| ||||||
Sbjct 679 CCTCTGCGATCATTCAAGGAGCCCAAGCATGAACTCATTCCTCAGTTCTACTACCAACAC 738
Query 893 GGACGTCCACCTGCGAAGGAACTAAGGGAGCAATGTATATCCATGGTTGATCAATTTTTT 952
|| |||||||| || || || | || ||| || |||||||||||||||||||||||||||
Sbjct 739 GGGCGTCCACCAGCAAAAGACCGAAAGGAACAGTGTATATCCATGGTTGATCAATTTTTT 798
Query 953 AGTAACTATATAGACGGACTTCATATGGATGAATTCAAATCCATTACTAAAGAAGTCTGC 1012
|| |||||||| || ||||| ||| | ||||| |||||||||||||| ||||||||||||
Sbjct 799 AGAAACTATATTGATGGACTACATGTAGATGAGTTCAAATCCATTACGAAAGAAGTCTGC 858
Query 1013 AAGCTGCCTTCTTTTCTTTCCT-CTGTACTATTT-AGAAAGATAGA-CACGAGTGGCACC 1069
||||||||||||||||| | || ||| ||| ||| |||||||| || ||| | | ||||
Sbjct 859 AAGCTGCCTTCTTTTCTCT-CTCCTGCACT-TTTCAGAAAGATCGATCAC-AATTGCACT 915
Query 1070 GGTATCGTTACAAGGGATGCATTTATCAAGTATTGGGTTGATGGACATATGTTGGCAATG 1129
| ||| |||||||||||||| ||||||||||||||| |||||||| ||||||| | |||
Sbjct 916 GATATAGTTACAAGGGATGCGTTTATCAAGTATTGGATTGATGGAAATATGTTAACTATG 975
Query 1130 GACGTAGCCTCACAGATATATAATATTTTAAGGCAGCCA-GGTTGCAAGTACCTTAGACA 1188
||| |||||| |||||||||||||| |||||||| || || ||||||||||| |||||
Sbjct 976 GACACAGCCTCCCAGATATATAATATACTAAGGCAG-CAGGGCTGCAAGTACCTCAGACA 1034
Query 1189 GGCTGACTTCAAACCAGTTCTTGATGAGCTTCTGACAACTCATCCCGGCTTGGAATTCCT 1248
||| |||||||||||||||||||||||||||||| |||| ||||| || || ||||| ||
Sbjct 1035 GGCAGACTTCAAACCAGTTCTTGATGAGCTTCTGGCAACACATCCTGGGTTAGAATTTCT 1094
Query 1249 GAGGAATACAC-CTGAGTTTCAAGAAAGATATGCTGAGACCGTCATCTACAGAATATTTT 1307
||||| ||| | || |||||||||||||||||||| || |||||||||||||||||||
Sbjct 1095 GAGGACGACAAGC-GAATTTCAAGAAAGATATGCTGAAACTGTCATCTACAGAATATTTT 1153
Query 1308 ACTACATAAACAGATCAGGTACTGGTTGCATTACTCTTAGAGAGCTGAAGCGTGGGAATC 1367
||||||| |||||||| || ||||||||| ||||||||||||||||||| ||||| ||||
Sbjct 1154 ACTACATTAACAGATCCGGAACTGGTTGCCTTACTCTTAGAGAGCTGAAACGTGGAAATC 1213
Query 1368 TTATTACTGCCATGCAACAAGTTGATGAAGAAGACGACATCAATAAAGTTATTAGGTACT 1427
| ||| |||| ||||||||| |||||||||| ||||||||||||||| ||||||||||||
Sbjct 1214 TAATTGCTGCTATGCAACAACTTGATGAAGAGGACGACATCAATAAAATTATTAGGTACT 1273
Query 1428 TCTCCTATGAGCATTTCTACGTGATATACTGCAGATTTTGGGAACTCGATGGCGACCATG 1487
||||||||||||| |||||||| |||||||||| |||||||||||| ||||| |||||||
Sbjct 1274 TCTCCTATGAGCACTTCTACGTCATATACTGCAAATTTTGGGAACTTGATGGTGACCATG 1333
Query 1488 ATT-TCCTTA-TTGATAAGGAAAATCTCATCAAATATGGTAATCATGCCCTTACCTACAG 1545
||| | ||| |||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1334 ATTGT--TTAATTGATAAGGACAATCTCATCAAATATGGTAATAATGCCCTTACCTACAG 1391
Query 1546 GATTGTCGACAGAATATTTTCACAGGTTCCTAGGAAATTTACAAGCAAAGTTGAGGGGAA 1605
|||||| || |||||||||||||||||||||||||| ||||| || |||||||| |||||
Sbjct 1392 GATTGTTGATAGAATATTTTCACAGGTTCCTAGGAAGTTTACGAGTAAAGTTGAAGGGAA 1451
Query 1606 GATGAGTTATGAAGATTTTGCATACTTTATTCTCGCTGAGGAGGATAAGTCATCTGAGCC 1665
|||||||||||||||||||| ||||| |||||||| ||||| || ||||| || |||||
Sbjct 1452 GATGAGTTATGAAGATTTTGTGTACTTCATTCTCGCCGAGGAAGACAAGTCTTCCGAGCC 1511
Query 1666 TAGTCTTGAGTATTGGTTCAAGTGCATAGACCTAGATGGAGATGGGGTGATCACTCCCAA 1725
|||||||||||||||||||||||| ||||| | |||| | |||| || |||||||| ||
Sbjct 1512 TAGTCTTGAGTATTGGTTCAAGTGTGTAGACTTGGATGAAAATGGCGTAATCACTCCAAA 1571
Query 1726 CGAGATGCAGTTTTTCTACGAAGAGCAGCTGCATCGCATGGAATGTATAACCCAGGAACC 1785
||| ||||||||||| | ||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1572 CGAAATGCAGTTTTTTTTCGAAGAGCAGCTGCATCGCATGGAATGCATAACCCAGGAAGC 1631
Query 1786 TGTACTCTTTGAA-GATATCCTATGTCAAATA-TTCGACATGATTAAACCAGAGAAGGAG 1843
||| || ||| | |||||||||||||||||| || ||||||||| ||| ||||| ||
Sbjct 1632 TGTTCT-TTTCAGCGATATCCTATGTCAAATAATT-GACATGATTGGACCCGAGAAAGAA 1689
Query 1844 AACTGCATCACACT-CCAGGATCTGAAAGCATCCAAACTTTCTGGAAATATTTTCAATAT 1902
||||||||||| || |||||||||||||| |||||||||||| ||||| | ||||||||
Sbjct 1690 AACTGCATCAC-CTTCCAGGATCTGAAAGGATCCAAACTTTCAGGAAACGTCTTCAATAT 1748
Query 1903 ACTCTTTAACCTGAACAAATTCATGGCGTTTGAAACCCGTGACCCTTTTCTCATTCGTCA 1962
|||||| ||||| || ||||||||||| |||||||| |||||||| ||||||||||| ||
Sbjct 1749 ACTCTTCAACCTAAATAAATTCATGGCATTTGAAACACGTGACCCATTTCTCATTCGCCA 1808
Query 1963 GGAACGTGAGAATCCAACATT-GACGGAATGGGACCGATTTGCTCAGAGAGAGTATGTGA 2021
|||| | ||| |||||| ||| ||| || ||||| ||||| |||||||||||||||||||
Sbjct 1809 GGAAAGGGAGGATCCAA-ATTTGACAGAGTGGGATCGATTCGCTCAGAGAGAGTATGTGA 1867
Query 2022 GGTTGTCAATGGAGGAAGATGTGGAGGAAGTCTCGAATGGGAGTGCAGATGTTTGGGATG 2081
| |||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||
Sbjct 1868 GATTGTCAATGGAGGAAGATGTAGATGAAGTCTCAAATGGGAGTGCAGATGTCTGGGATG 1927
Query 2082 AACCACTCGAATCTCCATTTTAGT 2105
||||||||||| ||||||||||||
Sbjct 1928 AACCACTCGAACCTCCATTTTAGT 1951
> Ahg914801 jgi|Araly1|914801|Al_scaffold_0001_5055
Length=1608
Score = 520 bits (281), Expect = 3e-146
Identities = 767/996 (77%), Gaps = 56/996 (6%)
Strand=Plus/Plus
Query 1100 TATTGGGTTGATGGACATATGTTGGCAATGGACG-TAGC--CTCACAGATATATAATATT 1156
||||||||| | ||| |||||||| ||| ||| | || | ||| | || || ||||
Sbjct 604 TATTGGGTTAAGGGAAATATGTTGACAAAGGA-GATAACAAGTCAGATATTTACAATA-C 661
Query 1157 TTAAGGCAGCCAGGTTGCAAGTACCTTAG-ACAGGCTGACTTCAAACCAGTTCTTGATGA 1215
|||| ||| |||| | |||||||||| | |||| ||| ||||| || || || | ||
Sbjct 662 TTAA-GCAACCAGATCACAAGTACCTT-GTCCAGGATGATTTCAAGCCTGTGCTCCAAGA 719
Query 1216 GCTTCTGA-CAACTCATCCC-GG-CTTGGAATTCCTG--AGGAATACACCTGAGTTTCAA 1270
| | | | |||| || ||| || ||| |||||| || ||| | ||||||||||||||
Sbjct 720 AC-TATTAGCAACACA-CCCTGGTCTT-GAATTCTTGCAAGG-A-ACACCTGAGTTTCAG 774
Query 1271 GAAAGATATGCTGAGACCGTCATCTACAGAATATTTTACTACATAAACA-GATCAGGTAC 1329
|| ||||||||||| || || || |||||||| | |||||| ||||| | || || |
Sbjct 775 GATAGATATGCTGAAACTGTAATATACAGAATCTATTACTATATAAATAGGA-GTGGGAA 833
Query 1330 TGGTTGCA--TTACTCTT-AGAGAGCTGAAGCGTGGGAATCTTA-TT-ACTGCCATGCAA 1384
||| ||| |||| || |||||||| ||| | || ||| ||| || | ||| |||||
Sbjct 834 TGG--GCATCTTAC-ATTGAGAGAGCTTAAGAGAGGAAAT-TTAGTTGA-TGCAATGCAG 888
Query 1385 CAAGTTGATGAAGAAGACGACATCAATAAAGTTATT-AGGTACTTCTCCTATGAGCATTT 1443
|| | ||||||||||| ||||||||||||| | || ||||||||||| ||||| |||||
Sbjct 889 CATGCCGATGAAGAAGAGGACATCAATAAAG-TGTTGAGGTACTTCTCGTATGAACATTT 947
Query 1444 CTACGTGATATACTGC-AGATTTTGGGAACTCGATGGC-GACCATGATTTCCTT-ATTGA 1500
|| || ||||||||| || || ||||| || ||| | || |||||||| ||| || ||
Sbjct 948 TTATGTCATATACTGCAAG-TTCTGGGAGCTGGAT-ACAGATCATGATTT-CTTGATCGA 1004
Query 1501 TAAGGAAAATCTCATCAAATATGGTAATCATGCCCTTACCTACAGGATTGTCGACAGAAT 1560
|| || ||||||||| |||| ||||||||||||| |||||||||||||||||| ||||
Sbjct 1005 CAAAGAGAATCTCATCCGATATAGTAATCATGCCCTCACCTACAGGATTGTCGACCGAAT 1064
Query 1561 ATTTTCACAGGTTCCTAGGAAATTTACAAG-CAAAGTTGAGGGGAAGATGAGTTATGAAG 1619
||||| ||||| || ||||| ||||| || |||| || || |||||| ||||||| |
Sbjct 1065 CTTTTCTCAGGTACCAAGGAAGTTTACTAGTAAAAG-CGAAGGAAAGATGGGTTATGAGG 1123
Query 1620 ATTTTGCATACTTTAT-TCTCGCTGAGGAGGATAAGTCATCTGAGCCTAGTCTTGAGTAT 1678
|||||| |||||||| | | ||||| || ||||||||||| || |||||||||||||||
Sbjct 1124 ATTTTGTTTACTTTATAT-TAGCTGAAGAAGATAAGTCATCAGAACCTAGTCTTGAGTAT 1182
Query 1679 TGGTTCAAGTGCATAGACCTAGATGGAGATGGGGTGATCACTCCCAACGAGATGCAGTT- 1737
||||||||||||||||| | |||| | |||| || | || | |||||| | || ||
Sbjct 1183 TGGTTCAAGTGCATAGATTTGGATGCAAATGGAGTTTTGACGCGGAACGAGCTACAATTC 1242
Query 1738 TTTCTACGAAGAGCAGCTGCATCGCATGGAATGTATAACCCAGGAACCTGTACTCTTTGA 1797
||| ||||| |||||||||||| | |||||||| || | || || |||| || |||||
Sbjct 1243 TTT-TACGAGGAGCAGCTGCATAGAATGGAATGCATGGCGCAAGAGGCTGTGCTGTTTGA 1301
Query 1798 AGATATCCTATGTCAAATATTCGACATGATTAAACCAGAGAAGGA-GAACTGCATCACAC 1856
||||| || || ||| ||||||||||| | ||||||||| | || | | ||| |
Sbjct 1302 GGATATTCTGTGCCAATTATTCGACATGGTCAAACCAGAGGACGAAGGGTT-CATTTGTC 1360
Query 1857 TCCAGGATCTGAAAGCATCCAAACTTTCTGGAAATAT-TTTCAATATACTCTTT-AACCT 1914
| | ||| |||| | || ||||||||||||||| | ||| || ||||| ||| |||||
Sbjct 1361 TAAATGATTTGAAGGGTTCTAAACTTTCTGGAAATGTCTTT-AACATACT-TTTCAACCT 1418
Query 1915 GAACAAATTCATGGCGTTTGAAACCCGTGA-CCCTTTTCTCATTCGTCAGGAACGTG-AG 1972
||||| || |||||||||||||| || || ||||| |||||||||||||| || | |
Sbjct 1419 CAACAAGTTTATGGCGTTTGAAACTCGCGATCCCTTC-CTCATTCGTCAGGAGCGGGCA- 1476
Query 1973 AATCCAACATTGACGGAATGGGACCGATTTGCTCAGAGAGAGTATGTGAGGTTGTCAATG 2032
||||| |||| ||| || ||||| || |||||||| ||||| ||| | ||| | ||||||
Sbjct 1477 AATCCGACATGGACAGAGTGGGATCGTTTTGCTCATAGAGAATATATTAGGCTATCAATG 1536
Query 2033 GAGGAAGATGTGGAGGAAGTCT-CGAATGGGAGTGC 2067
|| |||||||| || || | || | ||||| |||||
Sbjct 1537 GAAGAAGATGTCGAAGATG-CTTCTAATGGAAGTGC 1571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92825927065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5