BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44100.1
Length=2198
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494586 jgi|Araly1|494586|fgenesh2_kg.8__402__AT5G44100.1 3267 0.0
Ahg910061 jgi|Araly1|910061|Al_scaffold_0001_315 802 0.0
> Ahg494586 jgi|Araly1|494586|fgenesh2_kg.8__402__AT5G44100.1
Length=2172
Score = 3267 bits (1769), Expect = 0.0
Identities = 2064/2200 (94%), Gaps = 46/2200 (2%)
Strand=Plus/Plus
Query 17 aaaaaTGTCACAAATCTCCATTTCTTCTCGTCTCTCTTCGTATTAACCAATTTACCCAAT 76
|||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||
Sbjct 1 AAAAATGTCACAAATCTCCATTTCTTCTCGCCTCTATTCGTATT----AATTTACCCAAT 56
Query 77 ATTTCGTGCCCAATTCTCGGGTCAAATCCATCTAAAAGTTT-GTGCTTTTCGTATTGGGA 135
||||| | |||||||| |||| ||||||||||| ||||||| ||||||||||| ||||||
Sbjct 57 ATTTCATACCCAATTCCCGGGCCAAATCCATCT-AAAGTTTGGTGCTTTTCGTTTTGGGA 115
Query 136 TTAGTTCGATTTCTAAATCTGATTTAGGGTTTTAATCAATTTGGCAATCGGGTCTCTTGC 195
||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 116 TTACTTCGATTCCTAAATCTGATTTAGGGTTTTAATCAATTCGGCAATCGGGTTTCTTGG 175
Query 196 GATGAAGTTTTCGGA------GATTTATTGA-TTTCATGGTGGGTTTTTGTTTTCGAAGG 248
|||||||| |||||| |||||||||| ||||||||||||||||| |||| ||||
Sbjct 176 GATGAAGTATTCGGAGTTTCGGATTTATTGATTTTCATGGTGGGTTTTTCTTTTTGAAGC 235
Query 249 TCGTTGATGAAGAATTGACTTCTGGAATCTCAATCTCTGAAGGGTTTTTCGATGTTAAAT 308
||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 236 TCGTTAATGAAGAATTGACTTCTGGAATCTCGATCTCTGAAGGTTTTTTCGATGTTAAAT 295
Query 309 CCGTGAATCTGAGTTTTAAATGCTGAATTGGAAAACAGATCCAGGGGCTAATTAACGAAA 368
|||||||||| | |||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 296 TCGTGAATCTG-GGGTTAAATGCTGAATTGGAAAACAGATCCAGGTGCTAATTAA-GGAA 353
Query 369 AAAGGAGGTTTC-TTTTTGATATCGATTTTTGGGAATTTTGAGGTTTG--AGAGAGATCG 425
|||||||||||| |||||||||| || ||||||||||||||||||||| |||||||||
Sbjct 354 AAAGGAGGTTTCTTTTTTGATATTGA-TTTTGGGAATTTTGAGGTTTGAAAGAGAGATCA 412
Query 426 GAGAAGATGGATCTCGTGATCGGTGGGAAATTTAAGCTTGGGAA-GAAAATTGGTAGTGG 484
|||||||||||||| || ||||||||||||||||||||| |||| |||||||||||||||
Sbjct 413 GAGAAGATGGATCTTGTAATCGGTGGGAAATTTAAGCTT-GGAAGGAAAATTGGTAGTGG 471
Query 485 ATCATTTGGAGAGCTTTATCTAGGTGTAAATGTCCAAACAGGAGAAGAAGTTGCTGTCAA 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 ATCATTTGGAGAGCTTTATCTAGGTGTAAATGTCCAAACAGGAGAAGAAGTTGCTGTCAA 531
Query 545 GCTGGAAAATGTGAAGACCAAACATCCACAACTTCATTATGAGTCAAAGTTGTATATGCT 604
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 532 GTTGGAAAATGTGAAGACCAAGCATCCACAACTTCATTATGAGTCAAAGTTGTATATGCT 591
Query 605 GCTTCAAGGAGGATCTGGTATTCCGAACATCAAGTGGTTTGGAGTTGAAGGTGACTACAG 664
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 592 GCTTCAAGGAGGATCTGGTATTCCGAACCTCAAGTGGTTTGGAGTTGAAGGTGATTACAG 651
Query 665 CGTAATGGTTATTGACCTTCTAGGTCCTAGTCTTGAAGACTTGTTTAACTACTGCAACAG 724
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 652 CGTAATGGTTATTGACCTTCTAGGTCCTAGTCTTGAAGACTTGTTTAACTATTGCAACAG 711
Query 725 AAAGTTAACATTGAAAACTGTTCTCATGCTTGCCGACCAATTACTTAACAGGGTTGAGTT 784
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 712 GAAGTTCACATTGAAAACGGTTCTCATGCTTGCCGACCAATTACTTAACAGGGTTGAGTA 771
Query 785 TATGCATACTCGAGGTTTCCTTCACCGTGATATAAAACCTGACAACTTTTTAATGGGCCT 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 772 TATGCATACTCGAGGTTTCCTTCACCGTGATATAAAACCTGACAACTTTTTAATGGGACT 831
Query 845 TGGACGCAAAGCAAATCAGGTGTATATCATTGATTTTGGACTAGGGAAGAAATACAGAGA 904
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 832 TGGACGCAAAGCAAATCAGGTGTATATCATTGATTTCGGACTAGGGAAGAAATACAGAGA 891
Query 905 CCTTCAGACTCACAAGCACATTCCTTACAGAGAAAACAAAAATCTTACTGGGACAGCTCG 964
|||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 892 CCTTCAGACTCACAAGCACATTCCGTACAGAGAAAACAAAAATCTCACTGGGACTGCTCG 951
Query 965 GTATGCAAGTGTTAACACTCACCTTGGAGTCGAACAAAGTCGAAGGGATGATTTGGAATC 1024
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 GTATGCAAGTGTCAACACTCACCTTGGAGTCGAACAAAGTCGAAGGGATGATTTGGAATC 1011
Query 1025 ACTTGGTTATGTTCTTATGTATTTTCTCAAAGGAAGCTTACCTTGGCAGGGATTAAAAGC 1084
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1012 ACTTGGTTATGTTCTTATGTATTTTCTCAAAGGAAGCTTACCATGGCAGGGATTAAAAGC 1071
Query 1085 TGGGACAAAGAAGCAGAAGTATGACAGAATCAGCGAGAAAAAAGTGTCAACTCCTATAGA 1144
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1072 TGGGACAAAGAAGCAGAAGTATGACAGAATCAGCGAGAAGAAAGTGTCAACTCCTATAGA 1131
Query 1145 GGTATTGTGTAAAAACCAACCGTCCGAGTTCGTTTCATACTTTCATTACTGCCGATCTTT 1204
||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 1132 GGTGTTGTGTAAAAACCACCCGTCTGAATTCGTTTCATACTTTCATTACTGCCGATCTTT 1191
Query 1205 ACGGTTTGATGACAAACCTGATTACTCTTACCTCAAGAGGCTTTTCCGTGACTTGTTTAT 1264
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1192 ACGGTTTGATGACAAACCTGATTACTCTTACCTCAAGAGGCTCTTCCGTGACTTGTTCAT 1251
Query 1265 CCGAGAAGGTTATCAATTCGATTATGTATTTGACTGGACAGTCTTAAAGTATCCTCAAAT 1324
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1252 CCGAGAAGGTTATCAATTCGATTATGTATTTGACTGGACAGTCCTAAAGTATCCTCAAAT 1311
Query 1325 CGGATCCAGCTCTGGTTCTAGTTCACGAACAAGGCATCATACAACAGCGAAACCCGGATT 1384
|||| ||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 1312 CGGAAGTAGCTCTGGTTCTAGTTCACGAACAAGGCATCATACAACA---A--C--G-A-- 1361
Query 1385 CAACGCAGATCCTATTGAAAGACAAGAGAGGATCCTAGGAAAGGAAACAACCCGATATAA 1444
||| |||||||||| ||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1362 -AAC-CAGATCCTATCGAAAGACAAGAGAGGATCCCAGGAAAGGAAACAACCCGTTATAA 1419
Query 1445 AATCCCAGGTGCAGTGGAGGCATTCTCCAGAAGACACCCGACTACAACTTCTTCGCCTCG 1504
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||
Sbjct 1420 AATCCCAGGTGCAGTGGAGGCATTCTCCCGAAGACACCCGACTACAACTTCTACGCCACG 1479
Query 1505 AGATCGTTCTAGATCAAGAAACTCAGACGACGGACCTTTCTCTAAGCAGACACATGGAGA 1564
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1480 TGATCGTTCCAGATCAAGAAACTCAGATGACGGACCTTTCTCTAAGCAGACACATGGAGA 1539
Query 1565 CTCCGAAAGAGCAAACAGTTCCTCAAGATATAGAGCATCTTCTTCTAGGAAAGCCGTTGC 1624
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1540 CTCCGAAAGAGCAAACAGTTCCTCAAGATACAGAGCATCTTCTTCAAGGAAAGCCGTTGC 1599
Query 1625 TGCTTCAAGCTCCCGGCCAAGTTCTGCAGGTGGACCAAGCGAAAGCCGAACTTCAAGTCG 1684
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1600 TGCTTCAAGCTCCCGGCCAAGTTCTGCAGGTGGACCAAGCGAAAGCCGAGCTTCAAGTCG 1659
Query 1685 TCTGGTTTCCTCAAGCGGTGGTGGTGGCAGCGGCAGTGGAAATGGCCGTCCCTCAACTAG 1744
|||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 1660 TCTGGTTTCCTCAAGCGGCGGTGGTGGCAGCGGCAGTGGCAATGGCCGTCCCTCGACTAG 1719
Query 1745 CCAGAGAGTGCAAGCTGGATATGAATCCAAGACTCTGTCTTTCTCTCGTGCAACAGCGGC 1804
||||||||| |||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct 1720 CCAGAGAGTCCAAGCTGGATATGAATCCAAGACTTTGTCTTTCTCTCGTGCAACGGCTTC 1779
Query 1805 AAGAAACACTCGGGAAGATCAATTAAGAAGCTTCGAGCTTCTCTCTCTTCGGAAATAAAG 1864
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1780 AAGAAACACTAGGGAAGATCAATTGAGAAGCTTCGAGCTTCTCTCTCTTCGGAAATAAAG 1839
Query 1865 GAAAATGATGGAGAGAGAGACAGCAAACTCCATGAAAA-CCCAAAGAAATTACCTCTGAA 1923
| |||||| ||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1840 CTACATGATGAAGAGAGAGACAGCAAACTCCATGAAAAACCCAAAGAAATTACTTCTGA- 1898
Query 1924 GAAAGATGAGAATCTTGGTTTGAGGGAATTCATATATTTGAACCTGATGAAATCCTCAGA 1983
||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||| |
Sbjct 1899 GAAAGATGAGAATCTTGGTTTGAGGGAATTCATATATTTGAGCTTGATGAAATTCTCATA 1958
Query 1984 TCTTTTTACATGTAATTTCAGCTTCAGCTTGCAGAGATCTTTTTCAC---TCGTT-TT-G 2038
|||||| ||||||||||||||||||||||||||||||||||| ||| ||||| || |
Sbjct 1959 TCTTTT-ACATGTAATTTCAGCTTCAGCTTGCAGAGATCTTTCCCACCACTCGTTGTTTG 2017
Query 2039 TTTATGTAATCGTGATATGTGTTAGACAAACATAACAATCAAAAATGTAGAGAGAGTTTC 2098
|||||||||| ||||| |||||||||||| ||||||||||||| |||||||||||||||
Sbjct 2018 TTTATGTAATTGTGAT--GTGTTAGACAAA-ATAACAATCAAAA-TGTAGAGAGAGTTTC 2073
Query 2099 CATGTAAAAACGGTAAAATTTCTATCCGTATATTCGATTACTTCGAACCTATCTGTACTG 2158
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2074 CATGTAAAAACGGTAAGATTTCTATCCGTATATTCGATTACTTCGAACCTATCTGTACTG 2133
Query 2159 GTACTGTAATAAACAAAACAATCAACTGCTCTTTGGTCTC 2198
|||||||||||||||||||||||||||||||||||||||
Sbjct 2134 -TACTGTAATAAACAAAACAATCAACTGCTCTTTGGTCTC 2172
> Ahg910061 jgi|Araly1|910061|Al_scaffold_0001_315
Length=939
Score = 802 bits (434), Expect = 0.0
Identities = 794/962 (83%), Gaps = 48/962 (5%)
Strand=Plus/Plus
Query 914 TCACAAGCACATTCCTTACAGAGAAAACAAAAATCTTACTGGGACAGCTCGGTATGCAAG 973
||||| ||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 6 TCACAGGCACATTCCGTACAGAGAAAACAAAAATCTCACTGGAACAGCTCGGTATGCAAG 65
Query 974 TGTTAACACTCACCTTGGAGTCGAACAAAGTCGAAGGGATGATTTGGAATCACTTGGTTA 1033
||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 66 TGTGAACACTCACCTTGGAGTCGAACAAAGTCGAAGAGATGATTTGGAAGCACTTGGTTA 125
Query 1034 TGTTCTTATGTATTTTCTCAAAGGAAGCTTACCTTGGCAGGGATTAAAAGCTGGGACAAA 1093
||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 126 TGTGCTTATGTATTTCCTCAAAGGGAGCTTACCCTGGCAGGGATTAAAAGCTGGGACAAA 185
Query 1094 GAAGCAGAAGTATGACAGAATCAGCGAGAAAAAAGT-GTCAACTCCTATAGAGGTATTGT 1152
||||||||||||||||||||| || ||||||||||| | |||||||||||||||||||||
Sbjct 186 GAAGCAGAAGTATGACAGAATTAGTGAGAAAAAAGTAG-CAACTCCTATAGAGGTATTGT 244
Query 1153 GTAAAAACCAACCGTCCGAGTTCGTTTCATACTTTCATTACTGCCGATCTTTACGGTTTG 1212
||||||| |||||||| ||||| ||||| ||||||| ||||||||| || |||||||||
Sbjct 245 GTAAAAATCAACCGTCTGAGTTTGTTTCGTACTTTCGTTACTGCCGGTCGCTACGGTTTG 304
Query 1213 ATGACAAACCTGATTACTCTTACCTCAAGAGGCTTTTCCGTGACTTGTTTATCCGAGAAG 1272
||||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||||
Sbjct 305 ATGACAAACCTGATTACTCTTACCTTAAGAGGCTATTCCGCGACTTGTTTATTCGAGAAG 364
Query 1273 GTTATCAATTCGATTATGTATTTGACTGGACAGT-CTTAAAGTATCCTCAAATCGGATCC 1331
||||||| || ||||||||||||||||||||||| || || ||||||||| || || |||
Sbjct 365 GTTATCAGTTTGATTATGTATTTGACTGGACAGTTCTGAA-GTATCCTCAGATTGGTTCC 423
Query 1332 AGCTCTGGTTCTAGTTCACGAACAAGGCATCATACAACAGCGAAACCCGGATTCAAC-GC 1390
|||||||||||||||||||| ||| || |||||||||| || ||||| || || ||| ||
Sbjct 424 AGCTCTGGTTCTAGTTCACGGACACGGAATCATACAACTGCAAAACCGGGGTT-AACTGC 482
Query 1391 AG-ATCCTA-T-T-GAAAGACAAGAGAGGATC-CTAGGAAAGGAAACAACCCGATATAAA 1445
|| | ||| | | |||| || |||||||| || |||||||| || | || | |
Sbjct 483 AGGA-CCTTCTCTCGAAAAACCGGAGAGGATTGCT-GGAAAGGATACT-CGGGAGA-ACC 538
Query 1446 A-TCC-CAGGTGCAGTGGAGGCATTCTCCAGAAGACACCCGACTACAACTTCTTCGCCTC 1503
| | | |||||||| ||||| ||||| ||||| || ||||| | | ||||| | || |
Sbjct 539 GGTTCTCGGGTGCAGTTGAGGCTTTCTCAAGAAGGCATCCGAC-A-A-CTTCTACTCCGC 595
Query 1504 GAGATCGTTCTAG-ATCAAGAAACTCAGACGACGGACCTTTCTCTAAGCAGACACATGGA 1562
| ||||| || | |||||||||||| || || || ||||| |||||||| | | |||
Sbjct 596 GTGATCGCTCG-GCATCAAGAAACTCTGATGATGGGCCTTTGTCTAAGCATCCGCCTGGT 654
Query 1563 GACTCCGAAAGAGCAAACAGTTCCTCAAGATATAGAGCATCTTCTTCTAGGAAAGCCGTT 1622
||||| |||||| || |||||||||||||||| || | || |||| |||| ||| |||
Sbjct 655 GACTCAGAAAGACCACGCAGTTCCTCAAGATATGGA--AGCT-CTTCGAGGAGAGCAGTT 711
Query 1623 GCTGCTTCAAGCTCCCGGCCAAGTTCTGCAGGTGGACCAAGCGAAAGCCGAACTTCAAGT 1682
|| | | ||||||| || |||||||| ||||||||||||||||| || ||| | || ||
Sbjct 712 GC-G-T-CAAGCTCTCGACCAAGTTCCGCAGGTGGACCAAGCGATAGTCGATCCTCTAGC 768
Query 1683 CGTCTGGTTTCCTCAAGCGGTGGTGGTGGCAGCGGCAGTG-GAAATGGCCGTCCCTCAAC 1741
|||||||| | |||| | ||| || | | | |||| | || |||| | |||||
Sbjct 769 CGTCTGGTAACTTCAA-C--TGGAGGAGTCGGAA-CAGTAAGCAA---CCGTGCATCAAC 821
Query 1742 TAGCCAGAGAGTGCAAGCTGGATATGAATCCAAGAC-TCTGTCTTTCTCTCGTGCAACAG 1800
||||||||| | ||| | ||| | ||||||||||| || |||||| || |||||| |
Sbjct 822 AAGCCAGAGAATCCAATCAGGAAACGAATCCAAGACATC-GTCTTTTTCGCGTGCA---G 877
Query 1801 CGGCAAGAAACACTCGGGAAGATCAATTAAG-A--AGCTTCGAGCTTCTCTCTCTTCGGA 1857
| |||||||||| | ||||||| |||| | | ||||| |||||||||||||| | ||
Sbjct 878 C---AAGAAACACTAGAGAAGATCCATTACGGAGGAGCTTAGAGCTTCTCTCTCT-CAGA 933
Query 1858 AA 1859
||
Sbjct 934 AA 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82732012140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5