BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44120.3
Length=1657
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494580 jgi|Araly1|494580|fgenesh2_kg.8__396__AT5G44120.3 2577 0.0
> Ahg494580 jgi|Araly1|494580|fgenesh2_kg.8__396__AT5G44120.3
Length=1606
Score = 2577 bits (1395), Expect = 0.0
Identities = 1542/1612 (96%), Gaps = 14/1612 (1%)
Strand=Plus/Plus
Query 1 AGTGAGAAACCACAAAAAGTAAG-AA-ATATAAGAAATAACAAAATGGCTCGAGTCTCTT 58
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1 AGTGAGAAACCACAAAAAGTAAGAAAGATATAAGAAATAACAAAATGGCTCGAGTCTCTT 60
Query 59 CTCTTCTTTCTTTCTGCTTAACACTTTTGATCCTTTTCCATGGCTACGCGGCTCAACAGG 118
||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 61 CTCTTCTTTCTTTCTCCTTAACACTTTTGATCTTTTTCGATGGCTACGCGGCTCAACAGG 120
Query 119 GTCAGCAGGGTCAGCAGTTTCCGAACGAGTGCCAGCTCGACCAGCTCAATGCGCTCGAGC 178
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 GTCAGGAGGGTCAGCAGTTTCCAAACGAGTGCCAGCTCGACCAGCTCAATGCGCTCGAGC 180
Query 179 CGTCACACGTACTGAAGAGCGAGGCTGGTCGCATCGAGGTGTGGGACCACCACGCTCCTC 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGTCACACGTACTGAAGAGCGAGGCTGGTCGCATCGAGGTGTGGGACCACCACGCTCCTC 240
Query 239 AGCTCCGTTGCTCAGGTGTCTCCTTTGCACGTTACATCATCGAGTCTAAGGGTCTCTACT 298
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 AGCTCCGTTGCTCAGGCGTCTCCTTTGCACGATACATCATCGAGTCTAAGGGTCTCTACT 300
Query 299 TGCCCTCTTTCTTTAACACCGCGAAGCTCTCTTTCGTGGCTAAGGGACGAGGTCTTATGG 358
||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 301 TGCCCTCTTTCTTCAACACCGCCAAGCTCTCTTTCGTGGCTAAAGGACGAGGTCTTATGG 360
Query 359 GAAAAGTGATCCCTGGATGCGCCGAAACATTCCAAGACTCATCAGAGTTCCAACCACGCT 418
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 361 GAAAAGTGATCCCTGGATGCGCCGAGACATTCCAAGACTCATCAGAGTTCCAACCACGCT 420
Query 419 TCGAAGGTCAAGGTCAAAGCCAGAGGTTCCGTGACATGCACCAGAAAGTGGAGCACATTA 478
|||||||||||||| |||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 421 TCGAAGGTCAAGGTGAAAGGCAAAGGTTCCGTGACATGCACCAGAAAGTGGAGCACATAA 480
Query 479 GGAGCGGTGATACCATTGCCACAACACCCGGTGTAGCACAGTGGTTCTACAACGACGGAC 538
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 GGAGCGGTGACACCATTGCCACAACACCCGGTGTAGCACAGTGGTTCTACAATGACGGAC 540
Query 539 AGGAACCACTTGTCATCGTCAGCGTCTTCGATCTAGCCAGTCACCAGAACCAGCTTGACC 598
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGCAACCACTTGTCATCGTTAGCGTCTTCGATCTAGCCAGTCACCAGAACCAGCTTGACC 600
Query 599 GCAACCCAAGGCCATTTTACTTAGCCGGAAACAACCCACAAGGTCAAGTATGGCTACAAG 658
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 601 GCAACCCAAGGCCATTTTACTTAGCCGGAAACAACCCACAAGGCCAAGTATGGCTACAAG 660
Query 659 GACGAGAGCAACAGCCACAGAAGAACATTTTCAATGGATTTGGACCCGAGGTTATTGCTC 718
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 661 GACGAGAGCAACAGCCACAAAAGAACATTTTCAATGGATTCGGACCCGAGGTTATTGCTC 720
Query 719 AAGCTTTGAAGATCGATCTTCAGACAGCACAGCAACTTCAGAACCAAGATGACAACCGTG 778
|||||||||||||||||||| ||||||| || |||||||||||||||| ||||||||||
Sbjct 721 AAGCTTTGAAGATCGATCTTAAGACAGCGCAAAAACTTCAGAACCAAGAAGACAACCGTG 780
Query 779 GAAACATTGTCCGAGTCCAAGGACCGTTCGGTGTCATTAGGCCGCCTTTGAGGGGCCAGA 838
||||||||||||||||| |||| || ||||||||||||||||| ||||||||||||||||
Sbjct 781 GAAACATTGTCCGAGTCGAAGGCCCTTTCGGTGTCATTAGGCCACCTTTGAGGGGCCAGA 840
Query 839 GACCTCAGGAGGAGGAAGAA-GAAGAAGGACGACATGGACGACACGGTAATGGCTTAGAG 897
|||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 841 GACCTCAGGAGGAGGA-GAAAGAAGAAGGACGACACGGACGACACGGTAATGGCTTAGAG 899
Query 898 GAGACCATCTGCAGCGCCAGGTGCACCGATAACCTCGATGACCCGTCTCGTGCTGACGTG 957
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 900 GAGACCATCTGCAGCGCCAGGTCCACTGATAACCTCGATGACCCGTCTCGTGCTGACGTG 959
Query 958 TACAAGCCACAGCTCGGTTACATCAGCACTCTCAACAGTTACGATCTCCCCATCCTTCGC 1017
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TACAAGCCACAGCTTGGTTACATCAGCACTCTCAACAGTTACGATCTCCCCATCCTTCGC 1019
Query 1018 TTCATCCGTCTCTCAGCCCTCCGTGGATCTATCCGTCAAAACGCAATGGTGCTTCCACAG 1077
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1020 TTCATCCGTCTCTCAGCCCTCCGTGGATCCATCCGTCAAAACGCAATGGTGCTTCCACAG 1079
Query 1078 TGGAACGCAAACGCGAACGCTATTCTTTACGTGACAGACGGGGAAGCCCAAATCCAGATC 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TGGAACGCAAACGCGAACGCTATTCTTTACGTGACAGACGGGGAAGCCCAAATCCAGATC 1139
Query 1138 GTAAACGACAATGGTAACAGAGTGTTTGACGGACAAGTCTCTCAAGGACAGCTCATAGCC 1197
||||||||||| ||||||||||||||||||||||||||| ||||||||||||| || |||
Sbjct 1140 GTAAACGACAACGGTAACAGAGTGTTTGACGGACAAGTCACTCAAGGACAGCTAATTGCC 1199
Query 1198 GTACCACAAGGTTTCTCGGTGGTGAAACGCGCAACAAGCAACCGATTCCAGTGGGTTGAG 1257
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1200 ATACCACAAGGTTTCTCGGTGGTGAAACGCGCAACAAGTAACCGATTCCAGTGGGTTGAG 1259
Query 1258 TTCAAAACAAACGCTAACGCGCAAATCAACACTCTGGCGGGACGAACCTCAGTCTTGAGA 1317
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1260 TTCAAAACAAACGCAAACGCGCAAATCAACACTCTTGCTGGACGAACCTCAGTCTTGAGA 1319
Query 1318 GGTTTACCACTTGAAG-TCATAACCAATGGGTTCCAAATCTCACCCGAAGAAGCAAGGAG 1376
||||||||| ||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1320 GGTTTACCA-TTGGAGGTCATAACCAATGGGTTCCAAATCTCACCCAAAGAAGCAAGGAG 1378
Query 1377 GGTCAAGTTCAACACGCTCGAGACCACTTTGACTCACAGCAGTGGCCCAGCTAGCTACGG 1436
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GGTCAAGTTCAACACGCTCGAGACCACTTTGACTCACAGCAGTGGCCCAGCTAGCTACGA 1438
Query 1437 AAGGCCAAGGGTGGCTGCAGCTT-AAGAGCTTAAAACTGCAGCTTAACAATGAACCTCGA 1495
||||||||||||||||| ||||| || |||||||||| || || |||||||||||| |
Sbjct 1439 AAGGCCAAGGGTGGCTGAAGCTTGAA-AGCTTAAAACGGCGGCATAACAATGAACCCC-- 1495
Query 1496 GTACTGTAAAAGGAAGTTAAACAGTACGTAGTAATAATAATAAT---GTACGAAAATGTG 1552
|||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||
Sbjct 1496 -TACTGTAAAAGGAAGTTAAATAGTACGTAGTAATAATAATAATAATGTACGAAAATATG 1554
Query 1553 ACTAGTTTTGTTGAGGTTTACCTGTAAAATGCAACTCCTTTTCTGAATAAAA 1604
|||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1555 ACTAGTTTTGTTGAGGTTTACCTGTAAAATGCCACTCCTTTTCTGAATAAAA 1606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62125189595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5