BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44130.1
Length=914
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494579 jgi|Araly1|494579|fgenesh2_kg.8__395__AT5G44130.1 1321 0.0
> Ahg494579 jgi|Araly1|494579|fgenesh2_kg.8__395__AT5G44130.1
Length=898
Score = 1321 bits (715), Expect = 0.0
Identities = 840/901 (93%), Gaps = 6/901 (1%)
Strand=Plus/Plus
Query 13 ACACATAAACTCATCTTCAAAACTCAATGGCCACCActcctctcctcctccttctcctca 72
||||| ||| ||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ACACA-AAA-TCAACTTCAAAACTCAATGGCCACCACTCCTCTCTTCCTCCTTCTCCTCA 58
Query 73 ccgccgtcttcctctccACGGAGATAACCGCTCAACGCGCTGCTCCGGCTCCTGGCCCGG 132
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
Sbjct 59 CCGCCGTCTTCCTCTCCGCGGAGATAACCGCTCAACCCGCTGCTCCGGCTCCTGGCCCTG 118
Query 133 CTGGTCCCATCAACATCACGGCAATCCTCGAAAAAGGCGGACAATTTGTTACTCTTATCC 192
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 119 CTGGTCCCATCAACATCACGGCAATCCTCGAAAAAGGTGGTCAATTTGTTACTCTTATCC 178
Query 193 GTCTTTTAAACACAACTCAAATAGGAAACCAGATAAACATCCAAATCAACAGTTCATCAG 252
| |||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |
Sbjct 179 GACTTTTAAACACAACTCAAATCGGAAACCAAATCAACATCCAAATCAACAGTTCATCGG 238
Query 253 AAGGCATGACCGTGTTAGCACCAACAGACAACGCTTTCCAAAACCTTAAACCCGGAACCC 312
|||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 239 AAGGCATGACCGTGTTGGCACCAACAGACAATGCTTTTCAAAACCTTAAACCCGGAACAC 298
Query 313 TAAACAAACTAAGCCCGGACGACCAAGTCAAACTCATTCTTTACCATGTCAGTCCCAAAT 372
|||||||| | |||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 299 TAAACAAATTGAGCCCGGAAGACCAAGTCAAACTCATTCTTTACCATGTTAGTCCAAAAT 358
Query 373 TCTACACATTGGAAGATCTTCTCTCTGTAAGTAACCCGGTCAGAACTCAGGCTTCAGGTC 432
||||||||||||||||||| || || || |||||||||||||| ||||| ||||||||||
Sbjct 359 TCTACACATTGGAAGATCTCCTGTCGGTTAGTAACCCGGTCAGCACTCAAGCTTCAGGTC 418
Query 433 GAGACGTTGGTGGGGTTTACGGACTTAACTTCACCGGTCAAGGGAATCAAGTCAATGTAT 492
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 419 GAGACGCTGGTGGGGTTTACGGACTTAACTTCACCGGTCAAGGGAACCAAGTCAATGTAT 478
Query 493 CTACTGGTGTCGTTGAGACACGTCTCAGTACTTCATTGAGACAAGAACGTCCTCTTGCGG 552
|||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 479 CTACCGGTATCGTTGAGACACGTCTCAGTACTTCATTAAGACAAGAACGTCCTCTTGCGG 538
Query 553 TTTACGTGGTGGACATGGTATTGTTGCCGGAAGAGATGTTTGGAGAACGTAAGATCTCAC 612
||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||
Sbjct 539 TTTACGTGGTGGACATGGTATTGTTACCGGAAGAGATGTTCGGGGAACGCAAGATCTCAC 598
Query 613 C-GATGGCGCCTCCACCAAAATCAAAATCTCCTGATGTCTCAGATGATTCAGAGTCCTCT 671
| | |||||||||| || ||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 599 CAG-TGGCGCCTCCTCCTAAATCTAAATCTCCTGATGTCTCCGATGATTCAGACTCCTCT 657
Query 672 AAGAAAGCGGCTGCTCCGTCAGAGTCAGAGAAGTCTGGCTCCGGTGAGATGAATACTGGA 731
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 658 AAGAAAGCGGCTGCTCCGTCACAGTCAGAGAAGTCTGGCTCCGGTGAGGTGAATTCTGGA 717
Query 732 TTAGGGCTTGGTCTTGGACTTGTTGTGTTGTGTTTGAAATTCCTCCTTTGAGTTTGTTTA 791
|| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 718 TTCGGGTTTGGTCTTGGACTTGTTGTGTTGTGTTTGAAATTCCTCTTTTGAGTTTGTTTC 777
Query 792 TATATATTGATTTAATTGTGCGGGTTGTAATAAGAAATTTCT--ATATGTTTATTATGAT 849
||||||||||||||||||||||| ||||||||| |||||||| ||||||| | ||||||
Sbjct 778 TATATATTGATTTAATTGTGCGGTTTGTAATAATAAATTTCTTTATATGTTGAATATGAT 837
Query 850 GCATGATTTGAAAACTGAAATAAGAGATTATTATTTCGTGTGCATATATATGTATTTTCT 909
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 838 GCATGATTCGAAAAGTGAAATAAGAGATTATTATTTCGTGTGCATATATATGTATTTCCT 897
Query 910 G 910
|
Sbjct 898 G 898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33891273213
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5