BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44140.1
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg356670 jgi|Araly1|356670|fgenesh1_pg.C_scaffold_8000457 1317 0.0
> Ahg356670 jgi|Araly1|356670|fgenesh1_pg.C_scaffold_8000457
Length=867
Score = 1317 bits (713), Expect = 0.0
Identities = 799/841 (95%), Gaps = 4/841 (0%)
Strand=Plus/Plus
Query 1 ATGAATGTGAAAAAAGTTCCAAACGTTCCTGGATCACCTGCACTCTCTGCCTTGCTTAAG 60
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 ATGAATGTCAAAAAAGTTCCAAACGTTCCTGGATCACCTGGACTCTCTGCCTTGCTTAAG 60
Query 61 CTCGGTGTTATTGGTGGACTTGGACTCTATTGCATTGGTAGTAGCATGTACAATGTCGAT 120
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 CTTGGTGTTATTGGTGGGCTTGGACTCTATTGCATTGGTAGTAGTATGTACAATGTCGAT 120
Query 121 GGAGGACACCGTGCCATCGTGTTTAACCGGTTTACCGGTATCAAAGATAGGGTTTATCCA 180
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 121 GGAGGACACCGTGCCATCGTGTTTAACCGGTTTAGCGGTATCAAAGATAAGGTTTATCCA 180
Query 181 GAGGGTACTCATTTTAAGATACCATTGTTTGAAAGAGCAATTATCTATGATGTTCGTTCT 240
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 181 GAGGGTACACATTTTAAGATACCATTGTTTGAAAGAGCAATTATCTACGATGTTCGTGCT 240
Query 241 CGACCTTACGTTGAGAATAGCCAAACTGGAAGTAATGATCTTCAAACGGTGACTATTGGG 300
||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 241 CGACCTTACGTTGAGAATAGCGAAACTGGAAGTCATGATCTTCAAACGGTGACAATTGGG 300
Query 301 CTTAGGGTACTTACACGTCCTATGGGAGACCGCTTACCCGAGATTTACAGAACACTCGGT 360
|||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 301 CTTAGGGTTCTTACACGTCCCATGGGAGACCGATTGCCCGAGATTTACAGAACACTCGGT 360
Query 361 CAGAATTATGGAGAGCGAGTTCTTCCTTCCATTATCAATGAAACACTGAAAGCAGTAGTG 420
|||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 361 CAGAATTACGGAGAGCGAGTTCTCCCTTCCATTATCAACGAAACACTGAAAGCAGTAGTG 420
Query 421 GCTCAGTACAATGCAAGCCACCTCATTACACAGAGAGAAGCTGTGAGTAGGGAGATACGC 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCTCAGTACAATGCAAGCCAGCTCATTACACAGAGAGAAGCTGTGAGTAGGGAGATACGC 480
Query 481 AAGATTGTGACAGAGCGAGCAGCTAAATTTAACATTGCTTTAGATGATGTATCTATCACA 540
|| |||||||||||||||||| ||||||| |||||||||||||||||||| || ||||||
Sbjct 481 AATATTGTGACAGAGCGAGCATCTAAATTCAACATTGCTTTAGATGATGTTTCCATCACA 540
Query 541 AACCTCAAATTTGGCAAAGAGTTTACTGAAGCAATCGAGAAGAAACAAGTTGCGGCTCAG 600
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 541 AACCTCAAATTTGGCAAAGAGTTCACTGAAGCAATTGAGAAGAAACAAGTTGCGGCTCAG 600
Query 601 GAAGCAGAACGGGCTAAGTTCATTGTCGAAAAGGCCGAGCAAGACAAGAAAAGTGCTATT 660
|||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| ||
Sbjct 601 GAAGCAGAACGGGCGAAGTTCATAGTCGAAAAGGCCGAGGAAGACAAGAAAAGTGCTGTT 660
Query 661 ATCCGCGCTCAGGGAGAAGCTAAGAGTGCTCAACTCATAGGGCAAGCTATTGCGAACAAT 720
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 661 ATCCGCGCTCAGGGAGAAGCTAAGAGTGCTCAGCTCATAGGCCAAGCTATTGCAAACAAT 720
Query 721 GAAGCTTTCATTACTCTGAGGAAGATTGAAGCTGCAAGAGAGATTGCTCAGACCATAGCT 780
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 721 GAAGCTTTCATTACTCTGAGGAAGATTGAAGCTGCAAGAGAGATAGCTCAGACCATAGCT 780
Query 781 AAATCGGCGAACAAGGTTTACCTAAACTCCAGTGATCTCTT----AATCTCCAAGCAATG 836
| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 781 AGATCGGCTAACAAGGTTTACCTAAACTCCAGTGATCTCTTGCTTAATCTCCAAGCAATG 840
Query 837 A 837
|
Sbjct 841 A 841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30955808604
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5