BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44150.1
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915810 jgi|Araly1|915810|Al_scaffold_0008_561 1190 0.0
> Ahg915810 jgi|Araly1|915810|Al_scaffold_0008_561
Length=1116
Score = 1190 bits (644), Expect = 0.0
Identities = 774/838 (92%), Gaps = 4/838 (0%)
Strand=Plus/Plus
Query 137 ATGGACTCAAAATCTCTAGCTAAATCGAAGAGAGCTCATACTCTACACCACAGCAAGAAA 196
||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1 ATGGACTCAAAATCTTTAGCTAAATCGAAGAGAGCTCATACTCAACACCACAGTAAGAAA 60
Query 197 TCGCATTCTGTTCATAAACCGAAAGTTCCTGGAGTCTCAGAGAAGAATCCGGAGAAGCTA 256
|||||||| |||||||| ||||||| ||| ||||| ||||| |||||||||||||||||
Sbjct 61 TCGCATTCGGTTCATAAGCCGAAAGGTCCGGGAGTTTCAGATAAGAATCCGGAGAAGCTG 120
Query 257 CAAGGAAACCAAACCAAGAGTCCGGTTCAATCTCGACGAGTCTCTGCACTTCCGTCGAAT 316
||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 CAAGGGACCCAAACCAAGAGTCCGGTTCAATCTCGACGAGTCTCTGCACTCCCGTCGAAT 180
Query 317 TGGGATCGGTATGATGATGAACTTGATGCAGCTGAGGATTCATCGATAAGCCTACATTCT 376
||||||||||||||||||||||||||||||||||||||| | |||||||||| || ||
Sbjct 181 TGGGATCGGTATGATGATGAACTTGATGCAGCTGAGGATCCGTCGATAAGCCAACCGTCG 240
Query 377 GATGTTATTGTGCCAAAAAGCAAAGGAGCAGATTATCTGCATTTGATATCTGAAGCTCAA 436
||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 GATGTTATTCTGCCGAAAAGCAAAGGAGCGGATTATCTGCATTTGATATCTGAAGCTCAA 300
Query 437 GCTGAGTCTAATTCAAAGATTGAGAACAATTTAGATTGTTTATCGTCGTTAGACGATCTT 496
||||||||| ||||||||||||| ||||||||||||||| |||| |||||||||||||||
Sbjct 301 GCTGAGTCTCATTCAAAGATTGAAAACAATTTAGATTGTCTATCTTCGTTAGACGATCTT 360
Query 497 TTGCACGATGAGTTTAGTCGCGTAGTTGGATCTATGATCTCGGCTAGAGGGGAAGGTATA 556
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 TTGCACGATGAGTTTAGTCGCGTAGTTGGATCTATGATCTCGGCCAGAGGGGAAGGTATA 420
Query 557 CTTTCATGGATGGAAGATGATAACTTCGTTGTGGAAGAAGATGGATCAGGTTCATATCAA 616
|||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||||
Sbjct 421 CTTTCATGGATGGAAGATGACAACTTTGTTGTGGAGGAAGATGGATCAGCTTCATATCAA 480
Query 617 GAGCCTGGATTCCTCTCCTTAAATTTGAATGTTTTGGCAAAGACGCTAGAGAATGTGGAC 676
|||||||||||||||||||| |||||||||| | ||||||||||||||||||| |||||
Sbjct 481 GAGCCTGGATTCCTCTCCTTGAATTTGAATGCTCTGGCAAAGACGCTAGAGAAAGTGGAT 540
Query 677 TTGCATGAGCGACTCTACATTGATCCTGATCTTTTGCCGCTGCCCGAGCTGAATACATCC 736
||||| ||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct 541 TTGCACGAGCGACTCTACATTGAACCTGATCTTTTGCCACTGCCCGAGCTGTGTACATCC 600
Query 737 CAAACAAAAGTTAGCCGCAATGAAGAACCGAGTCATTCACACATAGCTCAAAACGACCCT 796
||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct 601 CAAACAAAAGTTAGCCGCAATGAAGAACCGAGTCATTCACACACAGCTGAGAACGACCC- 659
Query 797 A-TTGTCGTACCAGGAGAATCATCAGTCAG-GGAAGCTGAGTCGCTGGATCAAGTTAAGG 854
| ||||||||||||||||||||| |||| | |||||||| ||| ||||||||||| || |
Sbjct 660 AGTTGTCGTACCAGGAGAATCATTAGTC-GTGGAAGCTGTGTCTCTGGATCAAGTCAATG 718
Query 855 ACATACTAATACTCACAGACGAGTCAGAGAAATCTTCAGCAATTGAAGCTGATCTAGATT 914
| |||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 719 ATATACCAATACTCACAGACGAGTCAGAGAAATCTTCAGCGATTGAAACTGATCTAGATT 778
Query 915 TGCTCCTTAACTCCTTTAGTGAAGCACATACACAGCCAAACCCAGTGGCCAGTGCCTC 972
||||||| |||||||||| |||| ||||||| |||| ||||||||||||||| ||||
Sbjct 779 TGCTCCTCAACTCCTTTAATGAATCACATACTCAGCTTAACCCAGTGGCCAGTTCCTC 836
Score = 248 bits (134), Expect = 7e-65
Identities = 169/186 (91%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 977 AAATCTTCAGCTTTTGAAACGGAACTTGATTCTCTTCTCAAATCTCATAGTAGCACAGAA 1036
|||||||||||||||||||| || ||||||||||||||||| |||||||||||| |||||
Sbjct 868 AAATCTTCAGCTTTTGAAACTGAGCTTGATTCTCTTCTCAACTCTCATAGTAGCGCAGAA 927
Query 1037 CAATTCAACAAACCAGGGAACCCATCTGATCAAAAGATTCACATGACGGGTTTTAATGAT 1096
| || ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 928 CCATACAACAAACCAGCAAACCCATCTGATCAAAAGATTCACACGACGGGTTTTAATGAT 987
Query 1097 GTGCTTGATGATTTGCTCGAAAGTACTCCAGTATCGATCATACCACAGTC-GAACCAGAC 1155
|||||||||||||||||||||||| || |||| ||||||| |||| || | || ||||||
Sbjct 988 GTGCTTGATGATTTGCTCGAAAGTTCTTCAGTGTCGATCAAACCAAAG-CAGACCCAGAC 1046
Query 1156 CTCATC 1161
||||||
Sbjct 1047 CTCATC 1052
Score = 86.1 bits (46), Expect = 6e-16
Identities = 46/46 (100%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 1159 ATCCAAAGTTTTAGATGATTTTGATTCTTGGTTAGACACGATTTGA 1204
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 ATCCAAAGTTTTAGATGATTTTGATTCTTGGTTAGACACGATTTGA 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49369177515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5