BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G44160.1 Length=1724 Score E Sequences producing significant alignments: (Bits) Value Ahg948717 jgi|Araly1|948717|scaffold_800604.1 2170 0.0 Ahg485418 jgi|Araly1|485418|fgenesh2_kg.5__1410__AT3G50700.1 246 3e-64 > Ahg948717 jgi|Araly1|948717|scaffold_800604.1 Length=1442 Score = 2170 bits (1175), Expect = 0.0 Identities = 1350/1434 (94%), Gaps = 14/1434 (1%) Strand=Plus/Plus Query 131 TCAAGAACCCAGAAGAAGACATGACAAGTGAAGTTCTTCAAACAATCTCAAGTGGATCAG 190 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1 TCAAGAACCCAGAAGAAGACATGACAAGTGAAGTTCTTCAAACAATCTCTAGTGGATCAG 60 Query 191 GTTTTGCTCAGCCACAGAGCTCATCAACCCTGGATCATGATGAATCTCTCATCAATCCTC 250 |||||||| |||||||||||||| || |||||||||||||||||||||||||||| Sbjct 61 GTTTTGCT------CAGAGCTCATCAACTCTAGATCATGATGAATCTCTCATCAATCCTC 114 Query 251 CTCTTGTTAAGAAAAAGAGAAATCTCCCTGGAAATCCTGATCCGGAAGCTGAAGTGATAG 310 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 115 CTCTTGTTAAGAAGAAGAGAAATCTCCCAGGAAATCCTGATCCGGAAGCTGAAGTGATAG 174 Query 311 CTTTATCCCCCACGACCTTGATGGCTACGAACCGGTTCCTATGTGAGGTATGTGGCAAAG 370 || ||||||||| |||| |||||||||| |||||||||||||| ||| | |||||||||| Sbjct 175 CTCTATCCCCCAAGACCCTGATGGCTACAAACCGGTTCCTATGCGAGATCTGTGGCAAAG 234 Query 371 GTTTCCAAAGAGACCAAAACTTACAGCTTCATCGGCGAGGACATAATCTTCCATGGAAGT 430 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 235 GTTTCCAAAGAGACCAAAACTTACAGCTTCATCGGCGAGGACACAATCTTCCATGGAAGT 294 Query 431 TGAAGCAGAGGACAAGCAAAGAAGTGAGAAAACGTGTCTACGTTTGCCCCGAGAAGACAT 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 295 TGAAGCAGAGGACAAGCAAAGAAGTGAGAAAACGTGTCTACGTTTGCCCCGAGAAGACAT 354 Query 491 GTGTCCACCATCACTCCTCTAGAGCTCTAGGCGATCTCACTGGAATCAAAAAGCATTTTT 550 | |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| | Sbjct 355 GCGTCCACCATCACTCCTCTAGAGCTCTAGGCGATCTCACCGGAATCAAGAAGCATTTCT 414 Query 551 GCCGGAAACACGGGGAGAAGAAGTGGACGTGCGAGAAATGTGCTAAGAGATACGCAGTCC 610 ||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 415 GCCGGAAACACGGCGAGAAGAAGTGGAAGTGCGAGAAATGTGCCAAGAGATACGCAGTCC 474 Query 611 AATCTGATTGGAAAGCTCATTCCAAGACTTGTGGTACTAGAGAGTACCGTTGCGATTGTG 670 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 475 AATCTGATTGGAAAGCTCATTCCAAGACTTGTGGTACTAGAGAGTACCGTTGCGACTGTG 534 Query 671 GCACCATTTTCTCAAGGCGAGACAGCTTTATCACTCATAGAGCTTTCTGCGATGCCTTAG 730 |||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 535 GCACCATTTTTTCAAGGCGAGACAGCTTCATCACTCATAGAGCTTTTTGCGATGCCTTAG 594 Query 731 CGGAAGAAACCGCTAAGATAAACGCAGTGTCTCATCTCAACGGTTTAGCCGCGGCTGGAG 790 |||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||| Sbjct 595 CGGAAGAAACCGCTAAGATAAACGCAGTGTCTCATCTCAATGGTTTAGCGGCTGCTGGAG 654 Query 791 CCCCAGGATCAGTTAATCTCAACTATCAATATCTCATGGGAACATTCATCCCACCGCTTC 850 | |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 655 CAGCAGGATCAGTTAATATCAACTATCAATATCTCATGGGAACATTCATTCCACCGCTTC 714 Query 851 AACCATTTGTACCACAACCGCAAACAAATCCAAACCATCATCATCAACATTTTCAGCCAC 910 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 715 AACCATTTGTACCGCAACCGCAAACAAATCAAAACCATCATCATCAACATTTTCAGCCAC 774 Query 911 CAACTTCTTCGTCGCTCTCTCTATGGATGGGACAAGATATCGCGCCGCCTCAACCGCAAC 970 || || | ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 775 CACCTCCGTCGTCGCTCTCCCTATGGATGGGACAAGATATCGCGCCGCCTCAACCGCAAC 834 Query 971 CG--G-ACTACGATTGGGTTTTTGGAAACGCTAAGGCAGCGTCTGCTTGCATTGATAATA 1027 || | ||||||| |||||||| ||||||||||||||||||| ||| ||||||||||||| Sbjct 835 CGCAGGACTACGACTGGGTTTTCGGAAACGCTAAGGCAGCGTATGCATGCATTGATAATA 894 Query 1028 ATAATACTCACGATGAGCAGATTACGCAAAACGCAAACGCAAGTTTGACCACTACCACTA 1087 |||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 895 ATAATACTCACGCTGAGCACATTACGCAAAACGCAAACGCAAGTTTGACCACTACTACTA 954 Query 1088 CTCTCTCTGCCCCTTCTTTATTCAGCAGCGACCAACCACAAAACGCAAACGCAAATTCAA 1147 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 955 CTCTCTCTGTCCCTTCTTTATTCAGCAATGACCAACCACAAAACGCAAACGCAAACTCAA 1014 Query 1148 ACGTGAATATGTCCGCGACAGCTTTACTACAGAAAGCTGCTGAAATTGGCGCTACTTCTA 1207 |||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||| Sbjct 1015 ACGTGAATATGTCCGCAACAGCGTTACTACAGAAAGCTGCTGAAATTGGCGTTACTTCTA 1074 Query 1208 CAACAACCGCAGCGACCAATGACCCA-TCAACGTTTCTTCAAAGTTTCCCGCTTAAATCC 1266 |||| || || ||||| || |||| | ||||||||||||||||||||||||||||||||| Sbjct 1075 CAACGACGGCGGCGACTAACGACC-AGTCAACGTTTCTTCAAAGTTTCCCGCTTAAATCC 1133 Query 1267 ACCGATCAAACCACCAGTTATGACAGTGGCGAAAAGTTTTTTGCTTTGTTCGGGTCTAAC 1326 ||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 1134 TCCGATCAAACCACCACTTATGACGGTGGCGAAAAGTTCTTTGCTTTGTTCGGGTCTAAC 1193 Query 1327 AACAACATTGGGTTAATGAGTCGTAGTCATGATCATCAAGAGATCGAGAACGCTAGAAAT 1386 |||||||||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||| Sbjct 1194 AACAACATTGGGTTAATGAGTCATAGTCATAATCATCAGGAGATTGAGAACGCTAGAAAT 1253 Query 1387 GACGTTACGGTTGCGTCTGCCTTGGATGAATTACAGAATTACCCTTGGAAACGTAGAAGA 1446 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1254 GACGTTACGGTTGCGTCTGCGTTGGATGAATTACAGAATTACCCTTGGAAACGTAGAAGA 1313 Query 1447 GTTGATGGTGGAGGTGAAGTGGGTGGAGGAGGGCAAACTCGGGATTTCCTCGGGGTTGGT 1506 |||||||||||||| | || ||||||||||||||||||||||||||||||||| ||| Sbjct 1314 GTTGATGGTGGAGGAGGAGC---TGGAGGAGGGCAAACTCGGGATTTCCTCGGGGTCGGT 1370 Query 1507 GTACAAACGTTGTGCCATCCATCGTCTATCAATGGATGGATTTGAAAGAGTTTA 1560 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1371 GTACAAACGTTGTGCCATCCATCGTCTATCAATGGATGGATTTGAAACAGTTTA 1424 > Ahg485418 jgi|Araly1|485418|fgenesh2_kg.5__1410__AT3G50700.1 Length=1983 Score = 246 bits (133), Expect = 3e-64 Identities = 365/472 (77%), Gaps = 36/472 (8%) Strand=Plus/Plus Query 286 CCTGATCCGGAAG-CTGAAGTGATAGCTTTATCCCCCACGACCTTGA-TGGCTACGAACC 343 |||||||| | || | ||||| ||||||||||| || | || || | | || || ||| Sbjct 643 CCTGATCCAG-AGTCAGAAGTTATAGCTTTATCACCAAAAACATT-ACTAGCAACAAACA 700 Query 344 GGTTCCTATGTGAGGTATGTGGCAAA-GGTTTCCAAAGAGACCAAAA-CTTACAGCTTCA 401 | ||| ||||||| | ||| |||| ||||| |||||||||||||| ||| || ||||| Sbjct 701 GATTCGTATGTGAAATCTGTAACAAAGGGTTT-CAAAGAGACCAAAATCTT-CAACTTCA 758 Query 402 TCGGCGAGGACATAATCTT-CCATGGAAG-TTGAAG-CAGAGGA-C-AAGCAAAGAAGTG 456 ||| || ||||| ||| || ||||||||| || | |||| | | || |||||||||| Sbjct 759 TCGCCGTGGACACAAT-TTACCATGGAAGCTT--CGTCAGA-AATCGAA-CAAAGAAGTG 813 Query 457 -AGAAAACGTGTCTACGTTTGCCCCGAGAAG--ACATGTGTCCACCATCACTCC-TCTA- 511 |||||| ||||| ||||| || |||| | ||||| || ||| || || || | Sbjct 814 AAGAAAA-AAGTCTATGTTTG-TCC-TGAAGTTAGTTGTGTTCATCATGAC-CCTTC-AC 868 Query 512 GAGCTCTAGGCGATCTCACTGGAATCAA-AAAGCATTTTTGCCGGAAACACGGGGAGAAG 570 | ||| |||| ||||| ||||||||||| ||| || ||||| |||||||| || |||||| Sbjct 869 GTGCTTTAGGAGATCTAACTGGAATCAAGAAA-CACTTTTGTCGGAAACATGGTGAGAAG 927 Query 571 AAGTGGACGTGCGAGAAATGTGCTAAGAGATACGCAGTCCAATCTGATTGGAAAGCTCAT 630 ||||||| || || |||||| | |||| |||||| || ||||||||||||||||||||| Sbjct 928 AAGTGGAAATGTGATAAATGTTCAAAGAAATACGCTGTTCAATCTGATTGGAAAGCTCAT 987 Query 631 TCCAAGACTTGTGGTACTAGAGAGTACCGTTGCGATTGTGGCAC-CA-TTTTCTCAAGGC 688 ||||||| ||||||||||| |||||| || |||||||| || | |||||| | || Sbjct 988 TCCAAGATTTGTGGTACTAAAGAGTATAAATGTGATTGTGGGACTCTGTTTTCT-A-GGA 1045 Query 689 GAGACAGCTTTATCACTCATAGAGC-TTTCTGCGATGCCTTAGCGGAAGAAA 739 | || || ||||| || |||||||| ||| || ||||| || || ||||||| Sbjct 1046 GGGATAGTTTTATAACGCATAGAGCATTT-TGTGATGCTTTGGCTGAAGAAA 1096 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64677236010 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5