BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44160.1
Length=1724
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948717 jgi|Araly1|948717|scaffold_800604.1 2170 0.0
Ahg485418 jgi|Araly1|485418|fgenesh2_kg.5__1410__AT3G50700.1 246 3e-64
> Ahg948717 jgi|Araly1|948717|scaffold_800604.1
Length=1442
Score = 2170 bits (1175), Expect = 0.0
Identities = 1350/1434 (94%), Gaps = 14/1434 (1%)
Strand=Plus/Plus
Query 131 TCAAGAACCCAGAAGAAGACATGACAAGTGAAGTTCTTCAAACAATCTCAAGTGGATCAG 190
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 TCAAGAACCCAGAAGAAGACATGACAAGTGAAGTTCTTCAAACAATCTCTAGTGGATCAG 60
Query 191 GTTTTGCTCAGCCACAGAGCTCATCAACCCTGGATCATGATGAATCTCTCATCAATCCTC 250
|||||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 61 GTTTTGCT------CAGAGCTCATCAACTCTAGATCATGATGAATCTCTCATCAATCCTC 114
Query 251 CTCTTGTTAAGAAAAAGAGAAATCTCCCTGGAAATCCTGATCCGGAAGCTGAAGTGATAG 310
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 115 CTCTTGTTAAGAAGAAGAGAAATCTCCCAGGAAATCCTGATCCGGAAGCTGAAGTGATAG 174
Query 311 CTTTATCCCCCACGACCTTGATGGCTACGAACCGGTTCCTATGTGAGGTATGTGGCAAAG 370
|| ||||||||| |||| |||||||||| |||||||||||||| ||| | ||||||||||
Sbjct 175 CTCTATCCCCCAAGACCCTGATGGCTACAAACCGGTTCCTATGCGAGATCTGTGGCAAAG 234
Query 371 GTTTCCAAAGAGACCAAAACTTACAGCTTCATCGGCGAGGACATAATCTTCCATGGAAGT 430
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 235 GTTTCCAAAGAGACCAAAACTTACAGCTTCATCGGCGAGGACACAATCTTCCATGGAAGT 294
Query 431 TGAAGCAGAGGACAAGCAAAGAAGTGAGAAAACGTGTCTACGTTTGCCCCGAGAAGACAT 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TGAAGCAGAGGACAAGCAAAGAAGTGAGAAAACGTGTCTACGTTTGCCCCGAGAAGACAT 354
Query 491 GTGTCCACCATCACTCCTCTAGAGCTCTAGGCGATCTCACTGGAATCAAAAAGCATTTTT 550
| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 355 GCGTCCACCATCACTCCTCTAGAGCTCTAGGCGATCTCACCGGAATCAAGAAGCATTTCT 414
Query 551 GCCGGAAACACGGGGAGAAGAAGTGGACGTGCGAGAAATGTGCTAAGAGATACGCAGTCC 610
||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 415 GCCGGAAACACGGCGAGAAGAAGTGGAAGTGCGAGAAATGTGCCAAGAGATACGCAGTCC 474
Query 611 AATCTGATTGGAAAGCTCATTCCAAGACTTGTGGTACTAGAGAGTACCGTTGCGATTGTG 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 475 AATCTGATTGGAAAGCTCATTCCAAGACTTGTGGTACTAGAGAGTACCGTTGCGACTGTG 534
Query 671 GCACCATTTTCTCAAGGCGAGACAGCTTTATCACTCATAGAGCTTTCTGCGATGCCTTAG 730
|||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 535 GCACCATTTTTTCAAGGCGAGACAGCTTCATCACTCATAGAGCTTTTTGCGATGCCTTAG 594
Query 731 CGGAAGAAACCGCTAAGATAAACGCAGTGTCTCATCTCAACGGTTTAGCCGCGGCTGGAG 790
|||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 595 CGGAAGAAACCGCTAAGATAAACGCAGTGTCTCATCTCAATGGTTTAGCGGCTGCTGGAG 654
Query 791 CCCCAGGATCAGTTAATCTCAACTATCAATATCTCATGGGAACATTCATCCCACCGCTTC 850
| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 655 CAGCAGGATCAGTTAATATCAACTATCAATATCTCATGGGAACATTCATTCCACCGCTTC 714
Query 851 AACCATTTGTACCACAACCGCAAACAAATCCAAACCATCATCATCAACATTTTCAGCCAC 910
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 715 AACCATTTGTACCGCAACCGCAAACAAATCAAAACCATCATCATCAACATTTTCAGCCAC 774
Query 911 CAACTTCTTCGTCGCTCTCTCTATGGATGGGACAAGATATCGCGCCGCCTCAACCGCAAC 970
|| || | ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 775 CACCTCCGTCGTCGCTCTCCCTATGGATGGGACAAGATATCGCGCCGCCTCAACCGCAAC 834
Query 971 CG--G-ACTACGATTGGGTTTTTGGAAACGCTAAGGCAGCGTCTGCTTGCATTGATAATA 1027
|| | ||||||| |||||||| ||||||||||||||||||| ||| |||||||||||||
Sbjct 835 CGCAGGACTACGACTGGGTTTTCGGAAACGCTAAGGCAGCGTATGCATGCATTGATAATA 894
Query 1028 ATAATACTCACGATGAGCAGATTACGCAAAACGCAAACGCAAGTTTGACCACTACCACTA 1087
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 895 ATAATACTCACGCTGAGCACATTACGCAAAACGCAAACGCAAGTTTGACCACTACTACTA 954
Query 1088 CTCTCTCTGCCCCTTCTTTATTCAGCAGCGACCAACCACAAAACGCAAACGCAAATTCAA 1147
||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 955 CTCTCTCTGTCCCTTCTTTATTCAGCAATGACCAACCACAAAACGCAAACGCAAACTCAA 1014
Query 1148 ACGTGAATATGTCCGCGACAGCTTTACTACAGAAAGCTGCTGAAATTGGCGCTACTTCTA 1207
|||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1015 ACGTGAATATGTCCGCAACAGCGTTACTACAGAAAGCTGCTGAAATTGGCGTTACTTCTA 1074
Query 1208 CAACAACCGCAGCGACCAATGACCCA-TCAACGTTTCTTCAAAGTTTCCCGCTTAAATCC 1266
|||| || || ||||| || |||| | |||||||||||||||||||||||||||||||||
Sbjct 1075 CAACGACGGCGGCGACTAACGACC-AGTCAACGTTTCTTCAAAGTTTCCCGCTTAAATCC 1133
Query 1267 ACCGATCAAACCACCAGTTATGACAGTGGCGAAAAGTTTTTTGCTTTGTTCGGGTCTAAC 1326
||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1134 TCCGATCAAACCACCACTTATGACGGTGGCGAAAAGTTCTTTGCTTTGTTCGGGTCTAAC 1193
Query 1327 AACAACATTGGGTTAATGAGTCGTAGTCATGATCATCAAGAGATCGAGAACGCTAGAAAT 1386
|||||||||||||||||||||| ||||||| ||||||| ||||| |||||||||||||||
Sbjct 1194 AACAACATTGGGTTAATGAGTCATAGTCATAATCATCAGGAGATTGAGAACGCTAGAAAT 1253
Query 1387 GACGTTACGGTTGCGTCTGCCTTGGATGAATTACAGAATTACCCTTGGAAACGTAGAAGA 1446
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GACGTTACGGTTGCGTCTGCGTTGGATGAATTACAGAATTACCCTTGGAAACGTAGAAGA 1313
Query 1447 GTTGATGGTGGAGGTGAAGTGGGTGGAGGAGGGCAAACTCGGGATTTCCTCGGGGTTGGT 1506
|||||||||||||| | || ||||||||||||||||||||||||||||||||| |||
Sbjct 1314 GTTGATGGTGGAGGAGGAGC---TGGAGGAGGGCAAACTCGGGATTTCCTCGGGGTCGGT 1370
Query 1507 GTACAAACGTTGTGCCATCCATCGTCTATCAATGGATGGATTTGAAAGAGTTTA 1560
||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1371 GTACAAACGTTGTGCCATCCATCGTCTATCAATGGATGGATTTGAAACAGTTTA 1424
> Ahg485418 jgi|Araly1|485418|fgenesh2_kg.5__1410__AT3G50700.1
Length=1983
Score = 246 bits (133), Expect = 3e-64
Identities = 365/472 (77%), Gaps = 36/472 (8%)
Strand=Plus/Plus
Query 286 CCTGATCCGGAAG-CTGAAGTGATAGCTTTATCCCCCACGACCTTGA-TGGCTACGAACC 343
|||||||| | || | ||||| ||||||||||| || | || || | | || || |||
Sbjct 643 CCTGATCCAG-AGTCAGAAGTTATAGCTTTATCACCAAAAACATT-ACTAGCAACAAACA 700
Query 344 GGTTCCTATGTGAGGTATGTGGCAAA-GGTTTCCAAAGAGACCAAAA-CTTACAGCTTCA 401
| ||| ||||||| | ||| |||| ||||| |||||||||||||| ||| || |||||
Sbjct 701 GATTCGTATGTGAAATCTGTAACAAAGGGTTT-CAAAGAGACCAAAATCTT-CAACTTCA 758
Query 402 TCGGCGAGGACATAATCTT-CCATGGAAG-TTGAAG-CAGAGGA-C-AAGCAAAGAAGTG 456
||| || ||||| ||| || ||||||||| || | |||| | | || ||||||||||
Sbjct 759 TCGCCGTGGACACAAT-TTACCATGGAAGCTT--CGTCAGA-AATCGAA-CAAAGAAGTG 813
Query 457 -AGAAAACGTGTCTACGTTTGCCCCGAGAAG--ACATGTGTCCACCATCACTCC-TCTA- 511
|||||| ||||| ||||| || |||| | ||||| || ||| || || || |
Sbjct 814 AAGAAAA-AAGTCTATGTTTG-TCC-TGAAGTTAGTTGTGTTCATCATGAC-CCTTC-AC 868
Query 512 GAGCTCTAGGCGATCTCACTGGAATCAA-AAAGCATTTTTGCCGGAAACACGGGGAGAAG 570
| ||| |||| ||||| ||||||||||| ||| || ||||| |||||||| || ||||||
Sbjct 869 GTGCTTTAGGAGATCTAACTGGAATCAAGAAA-CACTTTTGTCGGAAACATGGTGAGAAG 927
Query 571 AAGTGGACGTGCGAGAAATGTGCTAAGAGATACGCAGTCCAATCTGATTGGAAAGCTCAT 630
||||||| || || |||||| | |||| |||||| || |||||||||||||||||||||
Sbjct 928 AAGTGGAAATGTGATAAATGTTCAAAGAAATACGCTGTTCAATCTGATTGGAAAGCTCAT 987
Query 631 TCCAAGACTTGTGGTACTAGAGAGTACCGTTGCGATTGTGGCAC-CA-TTTTCTCAAGGC 688
||||||| ||||||||||| |||||| || |||||||| || | |||||| | ||
Sbjct 988 TCCAAGATTTGTGGTACTAAAGAGTATAAATGTGATTGTGGGACTCTGTTTTCT-A-GGA 1045
Query 689 GAGACAGCTTTATCACTCATAGAGC-TTTCTGCGATGCCTTAGCGGAAGAAA 739
| || || ||||| || |||||||| ||| || ||||| || || |||||||
Sbjct 1046 GGGATAGTTTTATAACGCATAGAGCATTT-TGTGATGCTTTGGCTGAAGAAA 1096
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64677236010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5