BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44170.1
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948716 jgi|Araly1|948716|scaffold_800603.1 1138 0.0
> Ahg948716 jgi|Araly1|948716|scaffold_800603.1
Length=758
Score = 1138 bits (616), Expect = 0.0
Identities = 704/744 (95%), Gaps = 16/744 (2%)
Strand=Plus/Plus
Query 6 GAAGAAGAGAAATGAAATTCACAGATTCTCCGGTGATCGATCTGACGGTGAACGGCACAA 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 11 GAAGAAGAGAAATGAAATTCACAGATTCTCCGGTGATCGATCTGACGGTGAACGGTACAA 70
Query 66 AACTCTCAATCCAACAAGACAATGGCTCTATGCACGTCGGAACTTCCGTCTGGCCTTGCT 125
|||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 71 AACTCTCATTCCAACAAGACAATGGCTCAATGCACGTCGGAACCTCCGTCTGGCCTTGCT 130
Query 126 CACTAATCCTATCCAAATTCGCTGAACGCTGGTCAACACTAG-------A-C-TCATCAT 176
|||||||||| ||||||||||| ||||| ||||||||||||| | | |||||||
Sbjct 131 CACTAATCCTCTCCAAATTCGCCGAACGATGGTCAACACTAGACTCATCATCATCATCAT 190
Query 177 CAT---CAACAACATCTCCAAATCCATACGCCGAACTCTTCGATTTCCGTCGCCGTCGAG 233
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 191 CATCAACAACAACATCTCCAAATCCATACGCCGAACTCTTCGATTTCCGCCGCCGTCGCG 250
Query 234 GAATCGAGCTAGGAACAGGATGCGGAGTCGCCGGTATGGCTTTTTACTTACTAGGTCTAA 293
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 251 GAATCGAGCTAGGAACCGGATGCGGAGTCGCCGGTATGGCTTTTCACTTACTAGGTCTTA 310
Query 294 CGGAGATCGTACTCACAGACATAGCACCAGTCATGCCTGCGCTAAAACACAATCTGAAAC 353
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 311 CGGAGATCGTACTCACAGACATAGCACCAGTCATGCCGGCGCTAAAACACAATCTGAAAC 370
Query 354 GGAACAAAACGGCGTTAGGTAAATCTCTAAAAACCTCGATTGTTTATTGGAACAATCGAG 413
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 371 GGAACAAAACGGCGTTAGGTAAATCTCTGAAAACCTCGATTGTTTATTGGAACAATCGAG 430
Query 414 ATCAGATCTCGGCGTTGAAACCGCCGTTTGATTTGGTTATTGCGGCGGATGTTGTGTATA 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 ATCAGATCTCGGCGTTGAAACCGCCGTTTGATTTGGTTATTGCGGCGGATGTTGTGTATA 490
Query 474 TTGAGGAATCTGTAGGGCAATTAGTGACGGCGATGGAGTTGCTT-GTGGCGGATGATGGT 532
||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||
Sbjct 491 TTGAGGAATCTGTAGGGCAGTTAGTGACGGCGATGGAGTTG-TTGGTGGCGGATGATGGT 549
Query 533 GCGGTGTTGTTAGGTTATCAGATTAGGTCACCGGAAGCTGATAAGTTGTTTTGGGAGTTA 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 GCGGTGTTGTTAGGTTATCAGATTAGGTCACCGGAAGCTGATAAGTTGTTTTGGGAGTTA 609
Query 593 TGCGACATCGTTTTTAAGATTGAGAAAGTTCCTCATGAGCATCTGCATTC-TGATTATGC 651
|||||| ||||||||||||||||||||||||||||||||||||| ||| | |||||||||
Sbjct 610 TGCGACGTCGTTTTTAAGATTGAGAAAGTTCCTCATGAGCATCTTCAT-CATGATTATGC 668
Query 652 TTATGAAGAAACTGATGTTTATATCTTTAGGAAGAAGGTGAAGAAGAATGAAGCTGAATC 711
|||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 669 TTATGAGGAAACTGATGTTTATATCTTTAGGAAGAAGGTTAAGAAGAATGAAGCAGAATC 728
Query 712 AGTGTCATGAAGCTAGTTTTGGTT 735
| |||||||||||||||| |||
Sbjct 729 TGAATCATGAAGCTAGTTTTTGTT 752
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33586289877
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5