BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44190.1
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494575 jgi|Araly1|494575|fgenesh2_kg.8__391__AT5G44190.1 2069 0.0
Ahg887864 jgi|Araly1|887864|Al_scaffold_0904_1 619 1e-176
> Ahg494575 jgi|Araly1|494575|fgenesh2_kg.8__391__AT5G44190.1
Length=1376
Score = 2069 bits (1120), Expect = 0.0
Identities = 1304/1390 (94%), Gaps = 24/1390 (2%)
Strand=Plus/Plus
Query 1 GTATCATTCTTGttttctctaaatttttcaaaaaacctttagaattttcatttttttACG 60
||||||||||||||||||||||||||||| ||| |||||||||||||| |||||
Sbjct 1 GTATCATTCTTGTTTTCTCTAAATTTTTC---AAATCTTTAGAATTTTCAAGTTTTT--- 54
Query 61 ATTCCGATGTTAACTGTTTCTCCGGCTCCAGTACTCATCGGAAACAACTCAAAGGATACT 120
| | ||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 55 A-T-AAATGTTAACTGTTTCTCCGGCTCC---ACTCATCGGAAACAACTCGAAGGATACT 109
Query 121 TACATGGCGGCAGATTTCGCAGATTTTACGACGGAAGACTTGCCGGACTTTACGACGGTC 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 110 TACATGGCGGCAGATTTCGCAGATTTTACGACGGAAGGCTTGCCGGACTTTACGACGGTC 169
Query 181 GGGGATTTTTCCGATGATCTTCTTGATGGAATCGATTACTACGACGATCTTTTCATTGGT 240
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 GGAGATTTCTCCGATGATCTTCTTGATGGAATCGATTACTACGACGATCTTTTCATTGGT 229
Query 241 TTCGATGGAGACGATGTTTTGCCGGATTTGGAGATAGATTCGGAGATTCTTGGGGAATAT 300
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 230 TTCGATGGAGACGATGTTTTGCCGGATTTGGAGATTGATACGGAGATTCTTGGGGAATAT 289
Query 301 TCCGGTAGCGGAAGAGATGAGGAACAAGAAATGGAGGGTAACACTTCGACGGCATCGGAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 290 TCCGGTAGCGGAAGAGATGAGGAACAAGAAATGGAGGGTAACACTTCGACGGCGTCGGAG 349
Query 361 ACATCGGAGAGAGACGTTGG---TGTGTGTAAGCAAGAGggtggtggtggtggtgacggt 417
|| ||||||||||||| ||| || |||||||||||||||||| |||||||||||||||
Sbjct 350 ACGTCGGAGAGAGACGGTGGTCATGGGTGTAAGCAAGAGGGTGGCGGTGGTGGTGACGGT 409
Query 418 ggtTTTAGGGACAAAACGGTGCGTCGAGGCAAACGTAAAGGGAAGAAAAGTAAAGATTGT 477
||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 410 GGTGTTAGGGACAAAACGGTGCGTAGAGGCAAACGTAAAGGGAAGAAAAATAAAGATTGT 469
Query 478 TTATCCGATGAGAACGATATTAAGAAAAAACCTAAGGTGGATTGGACGCCGGAGTTACAC 537
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 470 TTATCCGATGATAACGATATTAAGAAAAAACCCAAGGTGGATTGGACGCCGGAGTTACAC 529
Query 538 CGGAAATTTGTACAAGCGGTGGAGCAATTAGGGGTAGACAAGGCGGTGCCGTCTCGAATC 597
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 530 CGGAAATTTGTACAAGCGGTGGAGCAATTAGGGGTAGACAAGGCGGTGCCGTCACGGATT 589
Query 598 TTGGAAATTATGAACGTTAAATCTCTCACTCGTCACAACGTTGCTAGCCATCTTCAGAAA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 TTGGAAATTATGAACGTTAAATCTCTCACTCGTCACAACGTTGCTAGCCATCTTCAGAAA 649
Query 658 TATAGGTCACATCGGAAACATCTACTAGCGCGTGAAGCAGAAGCTGCCAGCTGGAATCTC 717
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 TATAGATCACATCGGAAACATCTACTAGCGCGTGAAGCAGAAGCTGCCAGCTGGAATCTC 709
Query 718 CGGAGACATGCCACGGTGGCAGTGCCCGGAGTAGGAGGAGGAGGGAAGAAGCCGTGGACA 777
||| ||||||| |||||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct 710 CGGCGACATGCGACGGTGGCAGTGGCCGGAGTAGGAGGAGGTGGGAAGAAGCCATGGACG 769
Query 778 GCTCCTGCCTTAGGCTATCCTCCACACGTGGCACCAATGCATCATGGTCACTTCAGGCCT 837
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 770 GCTCCTGCCTTAGGCTATCCACCACACGTGGCACCAATGCATCATGGCCACTTCAGGCCT 829
Query 838 TTGCACGTATGGGGTCATCCTACGTGGCCAAAACACAAGCCTAATACTCCGGCGTCTGCT 897
|||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 830 TTGCACGTGTGGGGTCATCCTACGTGGCCTAAACACAAGCCTAATACTCCTGCGTCTGCT 889
Query 898 CATCGGACGTATCCAATGCCGGCCA-TTGCGGCGGCTCCGGCATCTTGGCCAGGTCATCC 956
|||||||||||||| || || | | ||||||||||||||||||||||||||||||||||
Sbjct 890 CATCGGACGTATCCGATTCC-GTTAGTTGCGGCGGCTCCGGCATCTTGGCCAGGTCATCC 948
Query 957 ACCGTACTGGCATCAGCAACCACTCTATCCACAGGGATATGGTATGGCATCATCGAATCA 1016
||||||||||| || |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 949 GCCGTACTGGCACCAACAACCACTATATCCACAGGGATATGGTATCGCATCATCGAATCA 1008
Query 1017 TTCAAGCATCGGTGTTCCCACAAGACAATTAGGACCCACTAATCCTCCCATCGACATTCA 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 TTCAAGCATCGGTGTTCCCACAAGACAATTAGGACCCACTAATCCTCCCATCGACATTCA 1068
Query 1077 TCCCTCGAATGAGAGCATAGATGCAGCTATTGGGGACGTTATATCAAAGCCGTGGCTGCC 1136
||||||||||||||||||||| || |||||||| || || ||| ||||||||||||||||
Sbjct 1069 TCCCTCGAATGAGAGCATAGACGCGGCTATTGGAGAAGTGATAACAAAGCCGTGGCTGCC 1128
Query 1137 GCTTCCTTTGGGACTGAAACCGCCGTCGGTTGACGGTGTTATGACGGAGTTACAACGTCA 1196
||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |||
Sbjct 1129 GCTTCCTTTGGGACTGAAACCGCCGTCAGTTGATGGTGTCATGACGGAGTTACAACATCA 1188
Query 1197 AGGAGTTTCTAATGTTCCTCCTCTTCCTTGAGAAAGA---TCTCCAAAATTTGTCGAAAT 1253
||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||
Sbjct 1189 AGGAGTTTCTAATGTTCCTCCTCTTCCTTGAGAAAAAAAATCTCCAAAATTTGCCGAAAT 1248
Query 1254 CTCAAACTTTTAACTTCAttttttt-GGTATCTTCTATGTATTTTTGCAAGGGAAAGA-- 1310
||| | |||||||||||||||||| ||||||||||| ||||||||||| |||||| |
Sbjct 1249 CTCGAT-TTTTAACTTCATTTTTTTTGGTATCTTCTAAGTATTTTTGCA-GGGAAAAATA 1306
Query 1311 CGATAAATCCTTGTTGCTTGATCATATGTATTTCTCTATATGAGTGCATGTATCGAAGTT 1370
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 CTATAAATCCTTGTTGCTTGATCATATGTATTTCTCTATATGAGTGCATGTATCGAAGTT 1366
Query 1371 AAGCAACTTT 1380
||||||||||
Sbjct 1367 AAGCAACTTT 1376
> Ahg887864 jgi|Araly1|887864|Al_scaffold_0904_1
Length=405
Score = 619 bits (335), Expect = 1e-176
Identities = 383/406 (94%), Gaps = 3/406 (1%)
Strand=Plus/Plus
Query 655 AAATATAGGTCACATCGGAAACATCTACTAGCGCGTGAAGCAGAAGCTGCCAGCTGGAAT 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAATATAGGTCACATCGGAAACATCTACTAGCGCGTGAAGCAGAAGCTGCCAGCTGGAAT 60
Query 715 CTCCGGAGACATGCCACGGTGGCAGTGCCCGGAGTAGGAGGAGGAGGGAAGAAGCCGTGG 774
|||||| ||||||| |||||||||||| |||||||||||||||| ||||||||||| |||
Sbjct 61 CTCCGGCGACATGCGACGGTGGCAGTGGCCGGAGTAGGAGGAGGTGGGAAGAAGCCATGG 120
Query 775 ACAGCTCCTGCCTTAGGCTATCCTCCACACGTGGCACCAATGCATCATGGTCACTTCAGG 834
|| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 121 ACGGCTCCTGCCTTAGGCTATCCACCACACGTGGCACCAATGCATCATGGCCACTTCAGG 180
Query 835 CCTTTGCACGTATGGGGTCATCCTACGTGGCCAAAACACAAGCCTAATACTCCGGCGTCT 894
||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 181 CCTTTGCACGTGTGGGGTCATCCTACGTGGCCTAAACACAAGCCTAATACTCCTGCGTCT 240
Query 895 GCTCATCGGACGTATCCAATGCCGGCCA-TTGCGGCGGCTCCGGCATCTTGGCCAGGTCA 953
||||||||||||||||| || ||| | |||||||||||||||||||||||||||||||
Sbjct 241 GCTCATCGGACGTATCCGATTCCGTT-AGTTGCGGCGGCTCCGGCATCTTGGCCAGGTCA 299
Query 954 TCCACCGTACTGGCATCAGCAACCACTCTATCCACAGGGATATGGTATGGCATCATCGAA 1013
||| ||||||||||| || |||||||| |||||||||||||||||||| |||||||||||
Sbjct 300 TCCGCCGTACTGGCACCAACAACCACTATATCCACAGGGATATGGTATCGCATCATCGAA 359
Query 1014 TCATTCAAGCATCGGTGTTCCCACAAGACAATTAGGA-CCCACTAA 1058
||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 360 TCATTCAAGCATCGGTGTTCCCACAAGACAATTAGGAACCCACTAA 405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52488357610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5