BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44200.1
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494573 jgi|Araly1|494573|fgenesh2_kg.8__389__AT5G44200.2 1363 0.0
> Ahg494573 jgi|Araly1|494573|fgenesh2_kg.8__389__AT5G44200.2
Length=1038
Score = 1363 bits (738), Expect = 0.0
Identities = 858/913 (94%), Gaps = 20/913 (2%)
Strand=Plus/Plus
Query 166 ATTCACTTCTTCTCACCGTGAAGCGATGGCTTCTTTGTTCAAGGAGCAAGCAAAGCTATC 225
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 ATTCACTTCTTTTCACCGTGAAGCGATGGCTTCTTTGTTCAAGGAGCAAGCAAAGCTCTC 180
Query 226 AGCTTATCGTGATAGAAGATTTTCAGGAACACAAGAGGAGTTTGATGAAGCGCTAAGAGC 285
|||||||| || ||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 181 GGCTTATCGAGACAGAAGATTTTCTGGAACACAAGAGGAGTTCGATGAGGCGCTAAGAGC 240
Query 286 ATCTACAACGGTTTACATTGGCAATGTGTCTTTTTACACTACTGAAGAACAGCTTTACGA 345
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 ATCTACAACGGTTTACATTGGCAATGTGTCTTTCTACACTACTGAAGAACAGCTTTACGA 300
Query 346 GCTTTTCTCTAGAGCTGGAGAAATCAAAAAGATCATCATGGGTTTGGATAAGAACACTAA 405
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 GCTTTTCTCTAGAGCAGGAGAAATCAAAAAGATCATCATGGGATTGGATAAGAACACTAA 360
Query 406 AACACCTTGTGGCTTTTGTTTCGTCCTGTTCTACTCTAGAGAGGATACTGAAGATGCAGT 465
||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 361 AACACCTTGTGGCTTTTGTTTCGTCCTTTTCTACTCGAGAGAGGATACTGAGGATGCAGT 420
Query 466 CAAGTATATAAGTGGGACTATTCTCGATGACCGGCCTATTCGTGTGGATTTTGATTGGGG 525
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 421 CAAGTATATAAGTGGGACTATTCTGGATGATCGGCCTATTCGTGTGGATTTTGATTGGGG 480
Query 526 ATTCCAAGAAGGAAGACAATGGGGCCGTGGTAGAAGCGGTGGCCAGGTTCGTGATGAATA 585
||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 481 GTTCCAAGAAGGAAGACAATGGGGACGTGGTAGAAGCGGTGGTCAGGTTCGAGATGAATA 540
Query 586 CCGTACAGATTACGATCCTGCTAGAGGTGGTTATGGGAAA-TTAGTTCAGAAGGAACTCG 644
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 541 CCGTACAGATTACGATCCTGCTAGAGGTGGTTAT-GGAAAGTTAGTTCAGAAGGAACTTG 599
Query 645 AAGCACAAAGGCAGCTCGTGGATTACGGTACTGGCTCATTGGGAGCTTATCCTCAAGCTG 704
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 600 AAGCACAAAGGCAGCTCGTGGATTACGGTACTGGCTCATTGGGAGCCTATCCTCAAGCTG 659
Query 705 CGCCAACGAATTATGGAAATGGAAGGCGTGGTGGTGGAAACTATGGTCAAGGAGGACAAA 764
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 660 CGCCATCGAATTATGGAAATGGAAGGCGTGGTGGTGGAAACTATGCTCAAGGAGGACCAA 719
Query 765 ATCGCCATGGAAGAGGAGACTACCATCGGAAACGACAAAGAGACGATGATCGCTATGGCC 824
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 720 ATCGCCATGGAAGAGGAGACTACCATCGGAAACGTCAAAGAGACGACGATCGCTATGGCC 779
Query 825 GCGATAACTCAAGAAGAAACACAGATCATGAGTCTAGGAGAGACACTGAT-AGTGACATG 883
| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 780 GTGATAACTCAAGAAGAAACACAGATCATGAGTCTAGGAGAGACACTGATCA-TGACATG 838
Query 884 AGACCGGAGAAGAACCCACGATTCCGTGAGAGCGGTGACTCCGATGACGATGGTGAAGAT 943
||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 839 AGACCGGAGAAGAACCCACGATTCCGTGAAAGCGGTGACTCCGACGATGATGGTGAAGAT 898
Query 944 GATCGGAAGAGAAGATCTTAAAACAAAACTTTAGAAGTTGTCAATGTTGCTGAATGG-TC 1002
||||||||||||||||||||||||||| | | | ||| | | | | || || ||
Sbjct 899 GATCGGAAGAGAAGATCTTAAAACAAA-C---A-ATGTT--C--T-T-G---AA-GGATC 943
Query 1003 AATGTAATCTTTAGATTGATGAGTCTGAACTCAGTTTGGGTTTTCTAGATTTTCATTACA 1062
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 944 AATGTAATCTTTAGACTGATGAGTATGAACTCAGTTTGGGTTTTCTAGATTTTCATTACA 1003
Query 1063 ACCTTTCTTAAGT 1075
| |||||||||||
Sbjct 1004 AACTTTCTTAAGT 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45251902479
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5