BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44210.1
Length=1063
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494572 jgi|Araly1|494572|fgenesh2_kg.8__388__AT5G44210.1 985 0.0
> Ahg494572 jgi|Araly1|494572|fgenesh2_kg.8__388__AT5G44210.1
Length=778
Score = 985 bits (533), Expect = 0.0
Identities = 719/803 (90%), Gaps = 36/803 (4%)
Strand=Plus/Plus
Query 271 ATGGCTCCAAGACAG-GCGAACGGTA-GAAGCATTGCCGTGAGTGAAGGCGGCGGAGGGA 328
|||||||||| || | | ||| |||| || || || |||||||||||||||||| ||
Sbjct 1 ATGGCTCCAAAAC-GAGTGAATGGTACTAA-CACCGCTGTGAGTGAAGGCGGCGGAAGG- 57
Query 329 AGACGATGACGATGACGACGATGCGGAAGGAAGTGCACTTTAGAGGTGTGAGGAAGCGTC 388
| | ||||||| | |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 58 A-A-GATGACG--G-CGACGATGAGGAAGGAAGTGCACTTTAGAGGTGTGAGGAAGCGTC 112
Query 389 CATGGGGTAGATACGCGGCGGAGATCCGTGACCCGGGAAAGAAAACCCGGGTTTGGCTCG 448
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 113 CATGGGGTAGATACGCGGCGGAGATCCGTGACCCGGGAAAGAAAACCCGAGTTTGGCTCG 172
Query 449 GGACATTCGACACGGCGGAGGAAGCTGCAAGAGCTTACGACACCGCCGCTAGAGAGTTTC 508
||||||| |||||||||||||||||||| || ||||||||||| ||||| ||||||||||
Sbjct 173 GGACATTTGACACGGCGGAGGAAGCTGCTAGGGCTTACGACACTGCCGCGAGAGAGTTTC 232
Query 509 GTGGCTCCAAAGCAAAGACTAATTTCCCTCTTCCCGGAGAGTCTACTACGGTTAACGACG 568
||||||||||||||||||||||||||||||||||||| ||| ||||| | || | |||||
Sbjct 233 GTGGCTCCAAAGCAAAGACTAATTTCCCTCTTCCCGGCGAGACTACTGCCGTCAGCGACG 292
Query 569 GTGGC-GA-G-AACGATTCTTACGTCAACCGTACGACGGTGACGACGGCGCGTGAGATGA 625
||| | || | ||||||||||||||||||||| || |||||||| ||||| |||||||||
Sbjct 293 GTGCCGGAGGTAACGATTCTTACGTCAACCGTTCGCCGGTGACGGCGGCGAGTGAGATGA 352
Query 626 CGCGTCAGAGATTTCCGTTTGCATGTCACCGGGAGCGTAAAGTCGTCGGTGGTTATGCTT 685
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 CGCGTCAGAGATTTCCGTTTGCATGTCACCGGGAGCGTAAAGTCGTCGGTGGTTATGCTG 412
Query 686 CTGCTGGTTTTTTCTTCGATCCGTCAAGAGCTGCTTCGTTAAGAGCAGAGCTTTCTCGGG 745
|||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 413 CTGCCGGTTTTTTCTTCGATCCGTCAAGAGCTGCTGCGTTAAGAGCGGAGCTTTCTCGGG 472
Query 746 TTTGTCCGGTTCGGTTTGATCCGGTTAATATCGAGTTGAGTATTGGTATTCGAGAAACCG 805
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 TTTATCCGGTTCGGTTTGATCCGGTTAATATCGAGTTGAGTATTGGTATTCGAGAAACCG 532
Query 806 TAAAAGTTGAACCGAGAAGAGAACTAAACCTGGATCTTAACCTAGCTCCACCGGTGGTGG 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TAAAAGTTGAACCGAGAAGAGAACTAAACCTGGATCTTAACCTAGCTCCACCGGTGGTGG 592
Query 866 ACGTTTAGAtttttttCTTCTTTTCATAATTTGTATTTTACATTGCCGGAAAA-TAATTA 924
||||||||||||||||||| |||| | ||| | ||||||||||||| || |||
Sbjct 593 ACGTTTAGATTTTTTTCTT-TTTT--T--TTT--A-----CATTGCCGGAAAAATATTTA 640
Query 925 ATGTTTTCTTTAGTAGATGAGAAAAA-GAAAAATCTCCTATGTTTTTGGCTAAGTAAGAG 983
||||||| |||||||||||||||||| | |||||||||||| || ||||||| |||| ||
Sbjct 641 ATGTTTTTTTTAGTAGATGAGAAAAAAGGAAAATCTCCTATATTATTGGCTATGTAATAG 700
Query 984 GAAttt-tt-tttCAGAAATCTCC-TATGGTTCC-CTAATTACGTGGATGTAATTAATTA 1039
||| | || ||| | | | ||| ||||||||| ||| | || |||||||||| | |
Sbjct 701 AAATCTCTTGTTTAATTAGTTTCCATATGGTTCCTCTA-T---GTAGATGTAATTAGT-A 755
Query 1040 CTAATCAAATATCTCCTTTTGAT 1062
||||||||||||||||||||||
Sbjct 756 TTAATCAAATATCTCCTTTTGAT 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39571587846
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5