BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44250.1
Length=1485
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948706 jgi|Araly1|948706|scaffold_800593.1 1986 0.0
> Ahg948706 jgi|Araly1|948706|scaffold_800593.1
Length=1266
Score = 1986 bits (1075), Expect = 0.0
Identities = 1199/1258 (95%), Gaps = 11/1258 (1%)
Strand=Plus/Plus
Query 121 AACCCTAATTTACACAGAAAATATGTGGGGAATTGGAGGAAATTACTACTGGCGAAAG-A 179
|||||||||||||| |||||| |||||||||||||||||||||||||| ||| ||||| |
Sbjct 4 AACCCTAATTTACAGAGAAAAGATGTGGGGAATTGGAGGAAATTACTATTGGAGAAAGAA 63
Query 180 -AA-AACAACAACGGAGG-AG--AAAGCGAAGCGATCGTTGTGGTATTCGCTTGGATGTC 234
|| |||| ||| | ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 64 GAACAACATCAATGAAGGAAGTCAAAGCGAAGCGATCGTTGTGGTATTCGCTTGGATGTC 123
Query 235 TAGCGAAGAACGCAATCTAAAGAACCATGTCGATCTCTATTCTTCTCTTCTTTGGGATTC 294
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 124 TAGCGAAGAACGCAATCTCAAGAACCATGTCGATCTTTATTCTTCTCTTCTTTGGGATTC 183
Query 295 TCTCGTTTGCCATTCTCAATTTCTCAACATGTTTCTTCCAGATAAAGCTGCAGATTTAGC 354
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 184 TCTCGTTTGCCATTCTCAATTTCTCAACATGTTTCTTCCAGACAAAGCTGCAGATTTAGC 243
Query 355 TTCTAATGTTGTTTCTGAACTTGTCAAGGAGCTCAAAGCAAAGCCAGTTCCTTTAGTGTT 414
|||||||||||| ||||||||||| |||||||| |||||||||||| |||||||||||||
Sbjct 244 TTCTAATGTTGTGTCTGAACTTGTGAAGGAGCTTAAAGCAAAGCCAATTCCTTTAGTGTT 303
Query 415 TGCTTCTTTCTCTGGTGGTCCTAATGCTTGTATGTATAAAGTTCTTCAAATACTTGAAGG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 TGCTTCTTTCTCTGGTGGTCCTAATGCTTGTATGTATAAAGTTCTTCAAATACTTGAAGG 363
Query 475 AACATGCGAAACGGGACTAAATCCGGATGATTGTAGATTGGTTAGAAACTGCATCTCAGG 534
|||||||| ||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 364 AACATGCGTAACCGGACTAAATCCGGATGATTGTAGATTGGTTAGAAACTGTATTTCAGG 423
Query 535 GTTTATTTATGACTCATGTCCTGTGGATTTCACTAGCGACTTGGGAGCTCGATTAGCGGT 594
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 GTTTATCTATGACTCGTGTCCTGTGGATTTCACTAGCGACTTGGGAGCTCGATTAGCGGT 483
Query 595 TCATCCAACTACGCTTAAAATGTCTAGTCCACCTAAACCGTTTGTATGGGCAGCGAATGG 654
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 484 TCATCCAACTACGCTTAAAATGTCTAATCCACCTAAACCGTTTGTTTGGGCAGCGAATGG 543
Query 655 TATTGCTTCGAGTCTCGATTATGTTTTTCTCAACAGGTTTGAATCACAGCGAGCCGAGTA 714
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 544 TATTGCTTCGAGTCTCGATTATGTTTTCCTCAACAGGTTTGAATCACAGCGAGCTGAGTT 603
Query 715 CTGGCAGACTCTTTACTCTACTATAATCATGAGAGTACCTTATCTCATTCTATGCTCTGA 774
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 604 CTGGCAGACTCTTTACTCTACTATAACCATGAGAGTACCTTATCTCATTCTATGCTCTGA 663
Query 775 AAACGATGACCTTGCTCCTTATCAAACTATACACAATTTCGCTACACGTCTCCAAGAACT 834
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 664 AAACGATGACCTTGCTCCTTATCAAACTATACACAATTTCGCTACACGTCTCCAAGAATT 723
Query 835 AGGAGGAAATGTAAAACTTGTAAAATGGAATGATTCCCCTCATTGTGGTCATTATCGTTA 894
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 724 AGGAGGAAATGTAAAACTTGTAAAATGGAATGATTCTCCTCATTGTGGTCATTATCGTTA 783
Query 895 TAACCAGGTCGACTATAAAGCTGCTGTATCTGAGTTCTTGTCAAAAGCAGCGTCGGTTTA 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 TAACCAGGTCGACTATAAAGCTGCTGTATCTGAGTTCTTGTCAAAAGCAGCGTCGGTTTA 843
Query 955 T-TCGCAGAAGACGAGAAGTCTTGACAGAGAAGCTATGAAAGGAAC--A-TGTCATGATG 1010
| | ||||||||| |||||||||||||||||||||||||||| ||| | ||| ||||||
Sbjct 844 TCT-GCAGAAGACAAGAAGTCTTGACAGAGAAGCTATGAAAGAAACTCAATGTGATGATG 902
Query 1011 AGATAACAGAGCCAATTCAGAGCTTGGGGCAATCAACCTCTGGTCTTAACCGAAGCTTCA 1070
||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||
Sbjct 903 AGATAACAGAGCCAATTCAAAGCTTGGGGCAATCAACCTCTGGTGTTAACAGAAGCTTCA 962
Query 1071 ACGGAACTCCACTTGTCACAACCGATCATTTCTTCGTACCTAGCACCGTAGGTTACTACG 1130
|||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||
Sbjct 963 ACGGAACTCCACTTGTCACAACCGATCATTTCTTTGTGCCTACCACCGTAGGTTACTACG 1022
Query 1131 TGGGCAGAGACGGCGGATATGTGCAAGATGAACACAAACAAGATTTGATTTGTTTGTCCA 1190
|||||||||| || ||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1023 TGGGCAGAGATGGTGGATATGTGCAAGATGAACACAAACAAGACTTGATTCGTTTGTCCA 1082
Query 1191 ATACTCAAACCAATGAATCGGTTAAGCCCAATGGAGTTCTAGGCCAAATCTTATTTGATG 1250
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1083 ATACTCAAACCGATGAATCGGTTAAGCCCAATGGAGTTCTAGGCCAAATCTTGTTTGATG 1142
Query 1251 TTTATATTCCGAAGAATGTTGAGGATTGGGATATAAAGCTATCAGAAACCGGGCGGTCTA 1310
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||
Sbjct 1143 TTTATATTCCGAAGAATGTCGAGGATTGGGATATAAAGTTATCAGAAACCGGGCGGGCTA 1202
Query 1311 GGCGGAGACCGGGGAAGAGATTTATACGTAGATCGAGATTGTAACATCTGAGTtatat 1368
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1203 GGCGGAGACCGGGGAAGAGGTTTATACGTAGATCGAGATTGTAACATCCGAGTTATAT 1260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55573667455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5