BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44260.1
Length=1600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494567 jgi|Araly1|494567|fgenesh2_kg.8__383__AT5G44260.1 1637 0.0
> Ahg494567 jgi|Araly1|494567|fgenesh2_kg.8__383__AT5G44260.1
Length=1435
Score = 1637 bits (886), Expect = 0.0
Identities = 1105/1209 (91%), Gaps = 21/1209 (2%)
Strand=Plus/Plus
Query 79 TCTTTCTCTCATCTTTCGCCACGTAGACATGGACGTCGAACATCACAAATCCGGCCACAT 138
||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 23 TCTCTCTCTCTTCTTTTGCCACGTAGACATGGACGTCGAACATCACAAATCCGGCCACAT 82
Query 139 CAGTAGACCAACGGTGGATATTCCACCGAGGAAGCTTCTTTCCTCCGCCAAGTCTCCGTC 198
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 83 CAGTAGACCAACGGTGGATATTCCACCGAGAAAGCTTCTTTCCTCCGCCAAGTCTCCGTC 142
Query 199 GTCAGTTTCAAGTCCCCTTCGCGA-CTATAAAGAACAGAAAGACTATTGTTACGACTCTG 257
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 143 GTCAGTTTCAAGTCCCCTTCG-GAACTATAAAGAACAGAAAGACTATTGTTACGACTCTG 201
Query 258 ACTCTGAGGATCCTTACGCTGGAGACCATTTCCGGATGTACGAATTCAAGATCCGACGGT 317
|||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 202 ACTCGGAAGATCCTTACGCCGGAGACCATTTTCGGATGTACGAATTCAAGATCCGACGGT 261
Query 318 GCACGCGTAGCCGTAGCCATGACTGGACCGACTGTCCTTTCTCTCATCCCGGTGAAAAGG 377
||||||||||||||||||| || |||||||||||||||||||| ||||| || |||||||
Sbjct 262 GCACGCGTAGCCGTAGCCACGATTGGACCGACTGTCCTTTCTCGCATCCTGGCGAAAAGG 321
Query 378 CTCGTCGCCGTGACCCTCGCCGGTTTCACTACACCGGAGAAGTATGCCCTGAGTTTAGCC 437
|||| || ||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 322 CTCGCCGTCGTGACCCTCGCCGGTTTCACTACACCGGCGAAGTATGTCCTGAGTTTAGCC 381
Query 438 GTCACGG---TGATTGTAGCCGTGGTGATGAATGCGG-TTTCGCTCACGGGGTTTTCGAG 493
| ||||| ||||||||||||||| || |||||||| ||| |||||||| |||||||||
Sbjct 382 GCCACGGCGGTGATTGTAGCCGTGGCGACGAATGCGGCTTT-GCTCACGGTGTTTTCGAG 440
Query 494 TGTTGGCTTCATCCGAGTCGTTACCGTACGGAAGCTTGTAAAGACGGTAAGCATTGTAAG 553
|||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 441 TGTTGGCTCCACCCGAGTCGTTATCGTACGGAAGCTTGTAAAGACGGTAAGCATTGTAAG 500
Query 554 AGGAAAGTTTGTTTCTTTGCTCATTCTCCACGTCAGCTGAGAGTTCTTCCACCGTCCCCG 613
||||| || |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 501 AGGAAGGTCTGTTTCTTTGCTCACTCTCCACGTCAGCTGAGAGTTCTTCCACCGTCGCCG 560
Query 614 GAGAATCATATTTCCGGTGGTTGCGGTGGATCACCGTCGTCATCCCCTGCATCGGTTTTA 673
||||||| | |||||||| | ||||||||||||||| |||||| || || || || |||
Sbjct 561 GAGAATCTTGTTTCCGGT--T-GCGGTGGATCACCGTTGTCATCGCCGGCGTCCGTGTTA 617
Query 674 AGCAATAAAAATAATCGATGTTGCTTGTTTTGTTCCCATTCTCCGACGAGTACTCTCTTG 733
|| | |||||||||||| || ||||||||||||||||| ||||||||||| |||||||||
Sbjct 618 AGTATTAAAAATAATCGGTGCTGCTTGTTTTGTTCCCACTCTCCGACGAGCACTCTCTTG 677
Query 734 AATTTATCACGATCACCTTCATCGTCTCCGCCTTTGTCTCCAGCTGATAAAGCCGATGCA 793
||||||| |||||| || || ||||||||||||||||| ||||||||||||| ||||
Sbjct 678 GGTTTATCAATATCACCGTCGTCATCTCCGCCTTTGTCTCCGGCTGATAAAGCCGCTGCA 737
Query 794 TTTTCACGGCTGAGCCGCCGTCGCACCGCCGTACTAAACGAACTGATTAGTTCTTTAGAT 853
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 738 TTTTCACGGCTGAGCCGCCGTCGCACGGCCGTACTTAACGAACTGATTAGTTCTTTAGAT 797
Query 854 TCCTTAAGTCTCACGGAAGCACTTGCAGCTTCTTCATCGTCTCCCGTTACCATGCCCATT 913
||||| ||||||||||||||||| || || ||||| |||||||||||||||||||| | |
Sbjct 798 TCCTTTAGTCTCACGGAAGCACTCGCGGCCTCTTCCTCGTCTCCCGTTACCATGCCTACT 857
Query 914 TCCACGGCGACGATGATCGCTTCATCGAATCTAAGCAGCAACCACCACCACCACCGTCTT 973
||||||||| |||||||||||||||| |||||||||| | ||||| |||||||||||||
Sbjct 858 TCCACGGCGGCGATGATCGCTTCATCCAATCTAAGCA--A-CCACCTCCACCACCGTCTT 914
Query 974 CCGCCGTGGCTTGATGTCGGAGACAGAGATCTCCAATTACAACAGAGTAGTCCTCTACGA 1033
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
Sbjct 915 CCACCGTGGCTTGATGTCGGAGACAGAGATCTCCAAATACAACAGAGTAGTCCTCCACAA 974
Query 1034 TTTGCTCTTTCACCTT-CTTCAACTCCAAGTTACCTCCATGGCCAGCTTCAGCCACCACC 1092
||||||||||| |||| |||| ||||||||||||||||||||||||||||| || || ||
Sbjct 975 TTTGCTCTTTC-CCTTTCTTCTACTCCAAGTTACCTCCATGGCCAGCTTCAACCGCCGCC 1033
Query 1093 GTCGAGCTTCTTTGGCGATGAATTCACACCACGTGGTGGCCGGCTAAGCGATTTCTCGGT 1152
||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| |||
Sbjct 1034 GTCGAGCTTCTTTAGCGATGAATTCACACCACGCGGTGGCCGGTTAAGCGATTTCACGGC 1093
Query 1153 GGCTGCAGCTGC-G--GCGGC--CCAA-GCTAGGGATAAAAATAGCTTTGAAGTCGGTTC 1206
|||||||||||| | ||||| |||| ||||||||||| ||||||||||||||||||||
Sbjct 1094 GGCTGCAGCTGCAGCTGCGGCGGCCAAAGCTAGGGATAAGAATAGCTTTGAAGTCGGTTC 1153
Query 1207 TAGTGGCGATCTTGATCTAGGATGGGTGAACGATCTTTTGACATGAACAGTATGACATCA 1266
|||||||||||||||||| ||||||||||||||||| |||||||||||| | |||| |||
Sbjct 1154 TAGTGGCGATCTTGATCTCGGATGGGTGAACGATCTCTTGACATGAACAATGTGACGTCA 1213
Query 1267 ACTGTGAAC 1275
|| ||||||
Sbjct 1214 ACGGTGAAC 1222
Score = 171 bits (92), Expect = 2e-41
Identities = 121/133 (91%), Gaps = 9/133 (7%)
Strand=Plus/Plus
Query 1438 TTTTTGTTAAATAAGAGAGTCCATAACTTCTATTG-T-T-ATATTGATCTCTTGGAACTT 1494
|||||||||||| | |||||| ||||||||||||| | | ||||||||||||||||||||
Sbjct 1306 TTTTTGTTAAAT-A-AGAGTCTATAACTTCTATTGTTATAATATTGATCTCTTGGAACTT 1363
Query 1495 GTAAT-A-TCTACTA-CATTGTGATCGAATTCCTATGTAATGTTTACTTCAAAATATTCT 1551
||||| | | ||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 GTAATAAGT-TACTATCCTTGTGATCGAATTCCTATGTAATGTTTACTTCAAAATATTCT 1422
Query 1552 GTTTAATAGAAAA 1564
|||||||| ||||
Sbjct 1423 GTTTAATAAAAAA 1435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59954045630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5