BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G44265.1

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg915798 jgi|Araly1|915798|Al_scaffold_0008_549                     632    0.0  


> Ahg915798 jgi|Araly1|915798|Al_scaffold_0008_549
Length=381

 Score =  632 bits (342),  Expect = 0.0
 Identities = 368/381 (97%), Gaps = 0/381 (0%)
 Strand=Plus/Plus

Query  1    ATGGATACACACACCACTAAATTAGTCGCGATTTCACTTCTACTGCTTCTCGTGATCTCC  60
            |||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct  1    ATGGATACACACACGACTAAATTAGTCGTGATTTCACTTCTACTACTTCTCGTGATCTCC  60

Query  61   GATTACACTAGGCTAATGATTCAGGTTCACTCGTACGTACCATTTTGTGCATACACATAT  120
            ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct  61   GATCACACTAGGCTAATGATTCAGGTTCACTCATACGTACCATTTTGTGCATACACATAC  120

Query  121  GATTACTTTTCTTATTGTCTAGACTTTCTCACGGGATATTACTACAAACCCGGTAAAAAA  180
            ||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct  121  GATTATTTTTCTTATTGTCTAGACTTTCTGACGGGATATCACTACAAACCCGGTAAAAAA  180

Query  181  TGTTGTGTCCATATCGTAAAACTTAACATAATTGCGAAACACAAAAAAGAGAACCCGAGG  240
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct  181  TGTTGTGTCCATATCGTAAAACTCAACATAATTGCGAAACACAAAAAAGAGAATCCGAGG  240

Query  241  CTTTTGTGTAATTGTGTTGAGATGATGACGAGAGGTTATACGCCTCCAATGTTGGCTGAT  300
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  241  CTTTTGTGTAATTGTGTTGAGATGATGACGAGAGGTTATACGCCTCCAATTTTGGCTGAT  300

Query  301  AAGATCCAACAGCTTCCTCTTCTTTGCAACACACATCTCAGTTTCCCTATCTCCTCTAGC  360
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  301  AAGATCCAACAGCTTCCTCTTCTTTGCAACACACATCTCAGTTTCCCAATCTCCTCTAGC  360

Query  361  ATGGATTGCTCCACGGTTTAA  381
            |||||||||||||||||||||
Sbjct  361  ATGGATTGCTCCACGGTTTAA  381



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13621545273


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5