BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G44270.1

Length=930
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg915797 jgi|Araly1|915797|Al_scaffold_0008_548                     213    2e-54


> Ahg915797 jgi|Araly1|915797|Al_scaffold_0008_548
Length=822

 Score =  213 bits (115),  Expect = 2e-54
 Identities = 140/152 (92%), Gaps = 2/152 (1%)
 Strand=Plus/Plus

Query  675  AATCAAAGAGAAAGAGATGATGTACAAGAGACATCTCGAAGAGGCGGAAGCCGCAAAAAT  734
            ||||||||||||||||||||||||||||||| | | ||||||| | ||||||||||||||
Sbjct  669  AATCAAAGAGAAAGAGATGATGTACAAGAGATACCGCGAAGAGACTGAAGCCGCAAAAAT  728

Query  735  GGTAGAGGAAGAGAGAGCTCTAAAACAACTGAGAAGGACAATCGTTCCTCAAACCAGACC  794
            ||||||||||||||||||||| |||||||||||||||||||| ||||||||  |||||||
Sbjct  729  GGTAGAGGAAGAGAGAGCTCTGAAACAACTGAGAAGGACAATGGTTCCTCACGCCAGACC  788

Query  795  AGTGTCAAACCTT-AACAACCCATTCTTACCT  825
            |||| ||||| || ||||||||||||||||||
Sbjct  789  AGTGCCAAAC-TTCAACAACCCATTCTTACCT  819



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34501239885


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5