BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44280.2
Length=1984
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915796 jgi|Araly1|915796|Al_scaffold_0008_547 1666 0.0
Ahg470350 jgi|Araly1|470350|fgenesh2_kg.1__304__AT1G03770.1 532 3e-150
> Ahg915796 jgi|Araly1|915796|Al_scaffold_0008_547
Length=1551
Score = 1666 bits (902), Expect = 0.0
Identities = 1014/1068 (95%), Gaps = 7/1068 (1%)
Strand=Plus/Plus
Query 653 GAATAACGAATGTCCTGCTTGCAGGAAGCATTGTGCAAGCCGGCGTTCTCTAAGAGACGA 712
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 GAACAATGAATGTCCTGCTTGCAGGAAGCATTGTGCAAGCCGGCGTTCTCTAAGAGACGA 548
Query 713 TCCGAAA-TTTGATGCTCTTATTGCTGCTTTATTTACAAATATTGATAGTTATGAGGAAG 771
|| ||| ||||||||||||||||| |||||||| ||||||||| |||||||||||||||
Sbjct 549 -CCCAAAGTTTGATGCTCTTATTGCAGCTTTATTCACAAATATTTATAGTTATGAGGAAG 607
Query 772 AGGAACTGGCTTTTCACGAAGATGAAATGGCTCGTAATAAGCAGATTCAAGCATCTATAG 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 AGGAACTGGCTTTTCACGAAGATGAAATGGCTCGTAATAAGCAGATTCAAGCATCTATAG 667
Query 832 CTCAGATATCGCAACGACAATCTGAGGCTCTTGTGAAAAGACGATCTCTT-GGTAAAGAG 890
|||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 668 CTCAAATATCGCAACGACAATCTGAGGCTCTTGTGAAAAGACGATCT-TTGGGTAAAGAG 726
Query 891 GCAGCAGTCTTAATGAGATCACCGCGTATTGCTAGTGGCTCCAGAAGGAGACGGAACAGC 950
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 727 GCAGCCGTCTTAATGAGATCACCGCGTATTGCTAGTAGCTCCAGAAGGAGACGGAACTGC 786
Query 951 AGAAACATGGAACAACAAAACGCATCAGAAGCTCATGAAGATGATGATAATGATGATAAT 1010
|||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||
Sbjct 787 AGAAACATGGAACAACAAAACGCATCAGAAGCCCATGACGATGATAATAATGATGATAAT 846
Query 1011 AACAACAGAGGAAGAGACAAAGATTCGTCTTCAGATGAGCGTGGTACAGAAGTCCGGCAG 1070
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 AACAACAGAGGAGGAGACAAAGATTCGTCTTCAGATGAGCGTGGTACAGAAGTCCGGCAG 906
Query 1071 AAGAAACGTAGAAAACGGTCTACAAGTCGTTCAACACAACACCCTTCTTCTTCAGGTGCA 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 907 AAGAAACGTAGAAAACGGTCTACAAGTCGTTCAACACAACACCCTTCTTCTTCTGGTGCA 966
Query 1131 AACAAAAACAATGGTAACTGTGCAGATAACGACACAGAAGTGTATAGAGACACCAAAGGC 1190
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 967 AACAAAAACAATGGTAACTGTGCAGATAATGACACAGAAGTGTATAGAGACAGCAAAGGA 1026
Query 1191 ATATCTCCCGGGCTTGTGTGGAATCCCGAGATACTGGCTTGGGGAAGAGGCGGGACAAGG 1250
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1027 ATATCTCCCGGGCTTGTGTGGAATCAAGAGATACTGGCTTGGGGAAGAGGCGGGACAAGG 1086
Query 1251 AGTAACACAAGGCATGGGAATAATACTTCTGGAGGTAGTAGTAAGAGTGTAAGGAATGCC 1310
||||||||||| |||||||||| |||||| |||||||||||||||||||| ||||||||
Sbjct 1087 AGTAACACAAGACATGGGAATAGTACTTCAGGAGGTAGTAGTAAGAGTGTGAGGAATGCT 1146
Query 1311 CGTGTGAACAAACTTGTTGAATATCTACGCAGCAGCGTAGATGGATCTAGTGTTGAGTTG 1370
||||||||||| ||||||||||| ||||| |||||| ||||||||||||| ||||||||
Sbjct 1147 CGTGTGAACAAGCTTGTTGAATACCTACGTAGCAGCATAGATGGATCTAGCGTTGAGTTA 1206
Query 1371 GATATTCATGTCAAGCTTGTCTCGCTGGATACAAAATGTATACCAGACTTACCACAGCCA 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 GATATTCATGTCAAGCTTGTCTCGCTGGATACAAAATGTATACCAGACTTACCACAGCCA 1266
Query 1431 TATCTCTGTTGCCGACCCACTTTGCTTGTAAAACAGCTCCGTGAATTCGTTGCACTTCAG 1490
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1267 TATCTCTGTTGCCGACCCACTTTGCTTGTAAAACAGCTCCGTGAATTCGTAGCACTTCAG 1326
Query 1491 ATACATTTGAAGACTGAAGAGGTTGAATTGTTAGTAACAAGAAGAAGAGTAGGAGAAGAT 1550
|| ||||||||||||||||||||||||||||| | |||||||||| | | ||||||||||
Sbjct 1327 ATGCATTTGAAGACTGAAGAGGTTGAATTGTTGGCAACAAGAAGA-G-G-AGGAGAAGAT 1383
Query 1551 GCGGCAATAGAGAATCTTCCTGCAGTGACTCCAGCTTCAGCAGCAGCATCTAAAGATGAG 1610
|||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||
Sbjct 1384 ATGGCAATAGAGAATCTTCCTGTAGTGACTCCAGCTTCAGCAGCAACATCCAAAGATGAG 1443
Query 1611 ATGCTGAGTTTGGAAGACAATGAAACATTGTCAAGGCTCAAAATCGATTTCATTTCAAGC 1670
|||| ||| ||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1444 ATGCAAAGTCTGGAAGACAATGAAACATTTTCAAGGCTCAAAGTCGATTTCATTTCAAGC 1503
Query 1671 CATGAACAACATTTGATCATAGCTTACCGGAAGAAGCAAACTGAGTGA 1718
|||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1504 CATGAACAACATTTGATCATAGCTTATCGGAAGAAGCAAACCGAGTGA 1551
Score = 396 bits (214), Expect = 4e-109
Identities = 350/411 (85%), Gaps = 28/411 (7%)
Strand=Plus/Plus
Query 159 AGCTTCTCGTCGGCTGAGATTCCCGATGTGGCAGACCAACCACGCGACCGATTTAACCC- 217
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 AGCTTCTCGTCGGCTGAGATTCCCGATGTGGCAGACCAACCACGCGACCGATTTAACCCG 75
Query 218 CGAAGCT-ACACAGGATCTACaagagaaggatgagacgaaagaagagaaagaaggagatg 276
| ||||| | |||||||| |||||| |||| ||||| |||||||| || || | | ||
Sbjct 76 C-AAGCTGA-ACAGGATCCACAAGACAAGGCTGAGAAGAAAGAAG-GA--GACG-A--TG 127
Query 277 aggaagtgaaacacgacgaagCGGAGGAAGACCAAGAAGTAGTGA--A-ACCCAACGACG 333
|||||||||||||||||||| ||||| |||| |||||| ||||| | ||||||||| |
Sbjct 128 AGGAAGTGAAACACGACGAAACGGAGCAAGAAGAAGAAGAAGTGATGATACCCAACGAAG 187
Query 334 CCGAGGAAGATGATGATGGTGACGATG-C-aga-ggaggacgaggaagaagaagtagaag 390
|||| ||||| || || | || | || | ||| |||||| || ||||| |||| |||||
Sbjct 188 CCGACGAAGAAGAGGAAGAAGATGGTGACGAGAAGGAGGAAGAAGAAGAGGAAGAAGAAG 247
Query 391 cagaggaagatgaagaagcagaggaagaggaagaagaagaagaggaagaagaagaagaag 450
|||||||||| ||||||| ||| ||||| |||||||||||||| || ||||| |||||||
Sbjct 248 CAGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGACGAAGAAG 307
Query 451 aagaagattctaaagaaagaagTCCATCTTCTATATCTGGAGACCAATCAGAGTTTATGG 510
|||||||||||||| || | | ||||||| ||||||||||||| |||||||
Sbjct 308 AAGAAGATTCTAAA--------TC--T-T-CTATATCAAGAGACCAATCAGAATTTATGG 355
Query 511 AAATTGATCTAGGGGAAATCCGTAAAGACGTGCAGTGTCCAATATGCCTAG 561
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 AAATTGATCTAGGGGAAATCCGTAAAGACGTGCAGTGTCCAATATGCCTAG 406
Score = 69.4 bits (37), Expect = 9e-11
Identities = 44/47 (94%), Gaps = 1/47 (2%)
Strand=Plus/Plus
Query 595 ATTATAAAGAAAACAAGGACTGTGATGGAATGTCTCCACAG-TTCTG 640
|||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 409 ATTATAAAGAAAACAAGGACTGTGATGGAATGCCTTCACAGGTTCTG 455
> Ahg470350 jgi|Araly1|470350|fgenesh2_kg.1__304__AT1G03770.1
Length=1571
Score = 532 bits (288), Expect = 3e-150
Identities = 704/892 (79%), Gaps = 80/892 (9%)
Strand=Plus/Plus
Query 653 GAATAACGAATGTCCTGCTTGCAGGAAGCATTGTGCAAGCCGGCGTTCTCTAAGAGACGA 712
||| || || |||||| |||||||||| |||||||||||||| |||||| ||||||||||
Sbjct 581 GAACAATGAGTGTCCTACTTGCAGGAAACATTGTGCAAGCCGACGTTCTTTAAGAGACGA 640
Query 713 TCCGAAA-TTTGATGCTCTT-ATTGCTGCTTTATT-TACAAATATTGAT-AGTTATGAGG 768
|| ||| |||||||| ||| || || ||||||| | |||||||||| | || |||||
Sbjct 641 -CCCAAACTTTGATGC-CTTAATAGCAACTTTATTCGA-AAATATTGATCAATT-TGAGG 696
Query 769 AAGAGGAACTGGCTTTTC-ACGAAGATGA-AATGGCTCGTAATAAGCAGATTCAAGCATC 826
| |||||| ||||||||| | ||||||| | |||||||||||||||||||||||||||
Sbjct 697 AGGAGGAAATGGCTTTTCGTC-AAGATGACGA-GGCTCGTAATAAGCAGATTCAAGCATC 754
Query 827 TATAGCTCA-GATATCGCAACGACAATCTGAGGCTCTTGTGAAAAGAC-GATCTCTTGGT 884
||||||||| | |||||||||||||||||||||| |||| |||||| | ||| |||||
Sbjct 755 TATAGCTCAAG-TATCGCAACGACAATCTGAGGCCCTTGCAAAAAGAAAG-TCTTTTGGT 812
Query 885 AAAGAGGCAGCAGTCTTAATGA-GATCACCG-CGTATTGCTAGTGGCTCCAGAAGGAGAC 942
||||| ||||| |||||| | | |||||| | |||| || ||||||||||||||| |||
Sbjct 813 AAAGACGCAGCGGTCTTA-TCAAGATCAC-GTCGTAGTGGTAGTGGCTCCAGAAGAAGAA 870
Query 943 GGAACAGCAGAAACATGGAACAACAAAACGCATCAGAAGCTCATGAAGATGATGATAATG 1002
||||| |||||||||||||||| | | | ||||||||| ||||| ||||||| |
Sbjct 871 GGAACTGCAGAAACATGGAACAGGATA-C--ATCAGAAGCCCATGA---TGATGAT---G 921
Query 1003 ATGATAATAACAACAGAGGAAGAGACAAAGATTCGTCTTCAGATGAGCGTGGTACAGAAG 1062
|| | || | ||| | || | | | ||||||||| ||||||||||||| | || | |||
Sbjct 922 ATCA-AA-A-CAA-A-AG-A-G-G-CAAAGATTCTTCTTCAGATGAGCCTTGTGCCGAAA 972
Query 1063 TCCGGCAGAAGAAACGTAGAAAA-CGGTCTACAAGTCGTTCAACACAACACCCTTCTTCT 1121
||| | || |||||| | |||| || ||||||| | | || | | |||||||
Sbjct 973 TCCTTCTGAGGAAACGAA-AAAAGCGCTCTACAA--C-T-CAGC-C-------TTCTTCT 1019
Query 1122 TCAGGTGCAAACAAAAACAATGGTAACTGTGCAGATAACGACACAGA--AGT-GTAT-AG 1177
||| ||||||||| ||| || |||||||||| ||| | |||||| || | || ||
Sbjct 1020 TCAAATGCAAACAACAACGAT---AACTGTGCAGGTAATGGCACAGAGCAGACGCATCAG 1076
Query 1178 AG--ACACCAAAGGCATATCTCCCGGGCTTGTGTGGAA-TCCCGAGATACTGGCTTGGGG 1234
|| ||| || ||| ||||| || | |||| ||||||| || || ||||| || |||||
Sbjct 1077 AGGGACAGCAGAGGAATATCACCTGTGCTTATGTGGAACTCA-GAAATACTTGCATGGGG 1135
Query 1235 AAGAGGCGGGACAAGGAGTAACACAAGGCATGGGAATAATA-CTTCTGGAGGTAGTAGTA 1293
||||||||| |||||||||||||||||||| || ||||||| | |||| || |||||
Sbjct 1136 AAGAGGCGGTACAAGGAGTAACACAAGGCAAGGAAATAATAACCAA-GGAGCTATTAGTA 1194
Query 1294 AGAGTGTAAGGAATGCCCGTGTGAACAAACTTGTTGAATATCTACGCAGCAGCGTAGATG 1353
|||| | || | | | | | |||| | |||||| |||||||| || | ||| |||| |
Sbjct 1195 AGAG-G-AATGC-T-CGC-T-TGAATAGACTTGTGGAATATCT-CGG-G-AGCTTAGAGG 1245
Query 1354 G-ATCTAGTGTTGAGTTGGATATTCATGTCAAGCTTGTCTCGCTGGATACAAAATGTATA 1412
| | |||||| ||||||||||||||| | |||||| |||||||||||||| || || ||
Sbjct 1246 GTAA-TAGTGTCGAGTTGGATATTCATCTTAAGCTTATCTCGCTGGATACAGAAGGTTTA 1304
Query 1413 CCAGACTTACCACAGCCATATCTCTGTTGCCGACCCACTTTGCTTGTAAAACAGCTCCGT 1472
| | |||||| |||||||||| |||||||| ||||||||||| |||||||| |||||
Sbjct 1305 CTAAACTTACTTGAGCCATATCTTTGTTGCCGGCCCACTTTGCTAGTAAAACAACTCCGC 1364
Query 1473 GAAT-TCGTTGCACTTCAGAT-ACATTTGAAGACTGAAGAGGTTGAATTGTT 1522
|||| | || |||| ||||| | ||| |||| |||||||||||||||||||
Sbjct 1365 GAATAT-GTGGCACGCCAGATGAAATT-GAAGGCTGAAGAGGTTGAATTGTT 1414
Score = 67.6 bits (36), Expect = 3e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 595 ATTATAAAGAAAACAAGGACTGTGATGGAATGTCTCCAC 633
||||||| |||||||||||||||||||||||||||||||
Sbjct 501 ATTATAAGGAAAACAAGGACTGTGATGGAATGTCTCCAC 539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74580699710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5