BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G44300.1

Length=568
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg330970 jgi|Araly1|330970|fgenesh1_pm.C_scaffold_8000313           577    3e-164


> Ahg330970 jgi|Araly1|330970|fgenesh1_pm.C_scaffold_8000313
Length=345

 Score =  577 bits (312),  Expect = 3e-164
 Identities = 334/345 (97%), Gaps = 0/345 (0%)
 Strand=Plus/Plus

Query  19   ATGGGTGTACTTGAAAACCTTTGGGACGACGTTGTGGCTGGTCCTCGACCCGAAGCCGGT  78
            |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct  1    ATGGGTGTACTTGAAAACCTATGGGATGACGTTGTGGCTGGTCCTCGACCTGAAGCCGGT  60

Query  79   GGCCGTGGCCATCTCCGACGAATCTCCACCAGCTTAACTAGCTTGAACAATACCACAGAA  138
            ||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||
Sbjct  61   GGCCGTGGCCATCTCCGGCGAATCTCCACCGGTTTAACTAGCTTGAACAATACCACAGAA  120

Query  139  GGAATGTCAGTGGCCGGATCGGTATCTCTTCCAGCGAGTCCGGCTACTCCGGTGACACCA  198
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  121  GGAATGTCAGTGGCCGGATCGGTATCTCTTCCGGCGAGTCCGGCTACTCCGGTGACACCA  180

Query  199  GGATCTGGTCGGAAAGTGGATGTGTGGAGGAGTGTATTTCATCCGGCAAGTAATGTGACC  258
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  181  GGATCTGGTCGGAAAGTGGATGTGTGGAGGAGTGTATTTCATCTGGCAAGTAATGTGACC  240

Query  259  ACAAGGGAGATTGGTGCTAATGTCTTTGACAAACCCTCTCATCCTAATTCTCCTACGGTT  318
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  241  ACAAGGGAGATTGGTGCTAATGTCTTTGACAAACCCTCTCATCCTAATTCTCCAACGGTT  300

Query  319  TATGACTGGATGTATAGCAACGAGACCAGGAGCAAGCACCGTTGA  363
            ||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct  301  TATGATTGGATGTATAGCAACGAGAGCAGGAGCAAGCACCGTTGA  345



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20756640416


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5