BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G44300.1 Length=568 Score E Sequences producing significant alignments: (Bits) Value Ahg330970 jgi|Araly1|330970|fgenesh1_pm.C_scaffold_8000313 577 3e-164 > Ahg330970 jgi|Araly1|330970|fgenesh1_pm.C_scaffold_8000313 Length=345 Score = 577 bits (312), Expect = 3e-164 Identities = 334/345 (97%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 19 ATGGGTGTACTTGAAAACCTTTGGGACGACGTTGTGGCTGGTCCTCGACCCGAAGCCGGT 78 |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| Sbjct 1 ATGGGTGTACTTGAAAACCTATGGGATGACGTTGTGGCTGGTCCTCGACCTGAAGCCGGT 60 Query 79 GGCCGTGGCCATCTCCGACGAATCTCCACCAGCTTAACTAGCTTGAACAATACCACAGAA 138 ||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||| Sbjct 61 GGCCGTGGCCATCTCCGGCGAATCTCCACCGGTTTAACTAGCTTGAACAATACCACAGAA 120 Query 139 GGAATGTCAGTGGCCGGATCGGTATCTCTTCCAGCGAGTCCGGCTACTCCGGTGACACCA 198 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 121 GGAATGTCAGTGGCCGGATCGGTATCTCTTCCGGCGAGTCCGGCTACTCCGGTGACACCA 180 Query 199 GGATCTGGTCGGAAAGTGGATGTGTGGAGGAGTGTATTTCATCCGGCAAGTAATGTGACC 258 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 181 GGATCTGGTCGGAAAGTGGATGTGTGGAGGAGTGTATTTCATCTGGCAAGTAATGTGACC 240 Query 259 ACAAGGGAGATTGGTGCTAATGTCTTTGACAAACCCTCTCATCCTAATTCTCCTACGGTT 318 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 241 ACAAGGGAGATTGGTGCTAATGTCTTTGACAAACCCTCTCATCCTAATTCTCCAACGGTT 300 Query 319 TATGACTGGATGTATAGCAACGAGACCAGGAGCAAGCACCGTTGA 363 ||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 301 TATGATTGGATGTATAGCAACGAGAGCAGGAGCAAGCACCGTTGA 345 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20756640416 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5