BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44310.2
Length=1313
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494559 jgi|Araly1|494559|fgenesh2_kg.8__375__AT5G44310.2 1524 0.0
> Ahg494559 jgi|Araly1|494559|fgenesh2_kg.8__375__AT5G44310.2
Length=1099
Score = 1524 bits (825), Expect = 0.0
Identities = 995/1078 (92%), Gaps = 7/1078 (1%)
Strand=Plus/Plus
Query 68 aagaagaagaaATTGTTT-TTGTGATTGATTAATATGGCGGCTATGCAGTTAACGAGAAC 126
|||||||||||||||||| || |||||||| || |||||||||||||| ||||||||||
Sbjct 1 AAGAAGAAGAAATTGTTTCTT-TGATTGATGAACATGGCGGCTATGCAACTAACGAGAAC 59
Query 127 GGTTTTCTTCGGGATCTCGAAGGCTTTCCCTAAAAGCCAAGCTCCTAGAACTCTTGCGGT 186
|||||||||||| |||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 60 GGTTTTCTTCGGTCTCTCAAAGGCTTTCCCCAAAAGCCAAGCTCCGAGAACTCTTGCGGT 119
Query 187 AGCGATTGGTCGGAAAAGCTCTCGTGTCTTTTTTGCATCGTCGGTTAACCATTCTAAGGG 246
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 GGTGATTGGTCGGAAAAGCTCTCGTGTCTTTTTTGCCTCGTCGGTTAACCATTCTAAGGG 179
Query 247 AAGATATGATCCAGTAGAGAAAGCGAGAGACTCGAGGGCCGACTTGGCATATGATTCGAA 306
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 180 AAGATATGATCCGGTAGAGAAAGCGAGAGACTCGAGGGCCGATTTGGCGTATGATTCGAA 239
Query 307 AAAATGGAGAGAAGAATCAGGAGAATACGCAGAAGCAGGTAAAGGGAAAGCCCACAAGAC 366
||||||||||||||||| |||||||||||||||||||| |||| |||||||||| |||
Sbjct 240 GAAATGGAGAGAAGAATCCGGAGAATACGCAGAAGCAGGCAAAGAGAAAGCCCACGAGAT 299
Query 367 AAAAGAGGAAGCTAAGGACAAAGCTTACGATATGAAAGAGAGAACGAAAGATTATGCTGA 426
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 300 AAAAGAGGAAGCTAAAGACAAAGCTTACGATGTGAAAGAGAGAACGAAAGATTATGCTGA 359
Query 427 ACAAACTAAGAATAAAGTGAATGAAGGAGCAAGCAGAGCAGCTGATAAAGCCTATGAGAC 486
|||||||||| ||||||||||||| ||||||||||||| |||||||||||||| || ||
Sbjct 360 ACAAACTAAGGGTAAAGTGAATGAAAGAGCAAGCAGAGCCGCTGATAAAGCCTACGAAAC 419
Query 487 GAAAGAGAAGGCCAAGGACAAAGCCTATGATGTGAAAGAGAAGACGAAAGATTACGCAGA 546
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 420 GAAAGAGAAGGCCAAGGACAAAGCCTATGACGTGAAAGAGAAGACAAAAGATTACGCAGA 479
Query 547 AGAGGCCAAGGATAAGGTGAATGAAGGAGCTAGTAGAGCTGCTGATAAAGCTTACGAGAC 606
||| | |||||||| || ||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 480 AGAAACTAAGGATAAAGTCAATGAAGGAGCAAGTAGAGCAGCTGATAAAGCCTACGAGAC 539
Query 607 AAAAGAGAAGGCTAAAGACAAAGCCTATGATGTGAAAGAGAAGACAAAAGATTTTGCGGA 666
|||||||||||||| ||||||||||||||||||||||||||| ||||||||| || ||
Sbjct 540 GAAAGAGAAGGCTAAGGACAAAGCCTATGATGTGAAAGAGAAGGCAAAAGATTACGCAGA 599
Query 667 AGAAACTAAGGAGAAAGTGAATGAAGGAGCGAGTAGAGCAGCAGATAAAGCTTATGATGT 726
|||||||||||| ||||| || |||||||| ||||||||||| ||||||||||| |||||
Sbjct 600 AGAAACTAAGGATAAAGTCAAGGAAGGAGCAAGTAGAGCAGCTGATAAAGCTTACGATGT 659
Query 727 GAAGGAGAAGACAAAGAATTATGCGGAACAAACAAAAGATAAAGTGAATGAAGGAGCGAG 786
||||||||| || ||| |||||||||||||||| || ||||| ||||||||||||||||
Sbjct 660 GAAGGAGAAAACGAAGGATTATGCGGAACAAACTAAGGATAAGGTGAATGAAGGAGCGAA 719
Query 787 TAGAGCTGCGGATAAAGCTGAAGAGACAAAAGATAAAGCAAAGGACTATGCAGAGGACTC 846
|||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 720 TAGAGCTGCGGATAAAGCAGAAGAAACAAAAGATAAAGCCAAGGACTATGCAGAGGACTC 779
Query 847 AAAGGAGAAAGCAGAGGACATGGCTCATGGGTTTAAGGAAAAGGCTCAAGATATTGGGGA 906
|||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 780 AAAGGAGAAAGCAGAGGATATGGCACATGGGTTTAAAGAAAAGGCTCAAGATATTGGGGA 839
Query 907 GAAGACTATGGATACTGTGAAAGATGTGTGGGAGACGGCGAAGAGCACGGCTCAGAAGGT 966
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAAGACTAAGGAGACTGTGAAAGATGTGTGGGAGACGGCGAAGAGCACGGCTCAGAAGGT 899
Query 967 GACTGAGGCTGTGGTTGGGTCCGGTGAGGAGGCGGATAAGGCTAGGGATGATGTTGATAA 1026
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 900 GACTGAGGCTGTGGTTGGGTCCGGTGAGGAGGCGGATAGGGCTAGGGATGATGTTGATAA 959
Query 1027 GGGCTTGGAAGATTTGTCGAAAAAGGCGAAGGAAAATCGAAATAAGGATGATGATTTCAA 1086
|||||||| ||| |||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 960 AGGCTTGGAGGATCTGTCGAAAAAGGCGAATGAAAATCGGAATAAGGATGATGATTTCAA 1019
Query 1087 GAGGTTCTAAATTTACTGATCATCTTGTTACCTT--TTCTCTTTTGTTGTTAT-TTTA 1141
||||||||||||| ||| |||||||||| || || || ||||||||||| || ||||
Sbjct 1020 GAGGTTCTAAATTCACTAATCATCTTGT-ACTTTAATTTTCTTTTGTTGT-ATGTTTA 1075
Score = 287 bits (155), Expect = 2e-76
Identities = 222/254 (87%), Gaps = 6/254 (2%)
Strand=Plus/Plus
Query 353 AAAGCCCAC-AAGACAAAAGAGGAA-GCTAAGGACAAAGCTTACGATATGAAAGAG-AGA 409
|||||| || || || ||||| ||| || ||||||||||| || || |||||||| ||
Sbjct 406 AAAGCCTACGAA-ACGAAAGA-GAAGGCCAAGGACAAAGCCTATGACGTGAAAGAGAAG- 462
Query 410 ACGAAAGATTATGCTGAACAAACTAAGAATAAAGTGAATGAAGGAGCAAGCAGAGCAGCT 469
|| |||||||| || ||| |||||||| ||||||| |||||||||||||| |||||||||
Sbjct 463 ACAAAAGATTACGCAGAAGAAACTAAGGATAAAGTCAATGAAGGAGCAAGTAGAGCAGCT 522
Query 470 GATAAAGCCTATGAGACGAAAGAGAAGGCCAAGGACAAAGCCTATGATGTGAAAGAGAAG 529
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 523 GATAAAGCCTACGAGACGAAAGAGAAGGCTAAGGACAAAGCCTATGATGTGAAAGAGAAG 582
Query 530 ACGAAAGATTACGCAGAAGAGGCCAAGGATAAGGTGAATGAAGGAGCTAGTAGAGCTGCT 589
| ||||||||||||||||| | |||||||| || || |||||||| |||||||| |||
Sbjct 583 GCAAAAGATTACGCAGAAGAAACTAAGGATAAAGTCAAGGAAGGAGCAAGTAGAGCAGCT 642
Query 590 GATAAAGCTTACGA 603
||||||||||||||
Sbjct 643 GATAAAGCTTACGA 656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49102317096
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5