BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44320.1
Length=2092
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948689 jgi|Araly1|948689|scaffold_800576.1 2950 0.0
Ahg492789 jgi|Araly1|492789|fgenesh2_kg.7__2222__AT4G20980.1 1692 0.0
> Ahg948689 jgi|Araly1|948689|scaffold_800576.1
Length=1815
Score = 2950 bits (1597), Expect = 0.0
Identities = 1729/1794 (96%), Gaps = 3/1794 (0%)
Strand=Plus/Plus
Query 9 CAACAATGGTGTTTGAAGCATTCGAAGTCGGCACAGTCCCATTCAATTCCGATGGTTGGG 68
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 24 CAACAATGGTGTTCGAAGCATTCGAAGTAGGCACAGTCCCATTCAATTCCGATGGTTGGG 83
Query 69 GACCACCAGATGCTTCCGACACTTCCTCCACCAGCGTCGCGGCGGCGAATCTCCTCCCAA 128
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 GACCTCCAGATGCTTCCGACACTTCCTCCACCAGCGTCGCGGCGGCGAATCTCCTCCCAA 143
Query 129 ACGTCCCCTTCGCTTCCTTCTCACGATCCGAAAAACTCGGACGCGTTGCTGATTGGACTC 188
||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||| |
Sbjct 144 ACGTCCCTTTCGCTTCCTTCTCACGTTCTGAAAAACTCGGACGCGTCGCTGATTGGACAC 203
Query 189 GAGCTCTCTCAAATCCATCAGCTCGTCCTCACACCGGATCCAAATCAGATCCATCAGCGA 248
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 204 GAGCTCTCTCAAATCCATCAGCTCGTCCTCACACCGGATCCAAATCAGATCCATCAGCAA 263
Query 249 TCTTCGATTTCTCAGCTTTTGCAGTAGATGAAGGATTTGGTCTAACAAACTCAGGTGGAA 308
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 264 TCTTCGATTTCTCAGCTTTTGCAGTAGATGAAGGATTTGGTCTAACTAATTCCGGTGGAA 323
Query 309 ACGCCGACGAAGACGCCGCTTTCCGATTAGTCGACGGAAAACCACCGCCGCGTCCTAAAT 368
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 324 ACGCCGACGAAGACGCAGCTTTCCGATTAGTCGACGGTAAACCACCGCCGCGTCCTAAAT 383
Query 369 TCGGACCTAAATGGAGATTCAATCAATACCATAACCGAAATCAGCTTCCTCAACGTCGTG 428
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 384 TCGGACCTAAATGGAGATTTAATCAATACCATAACCGTAATCAGCTTCCTCAACGTCGTG 443
Query 429 ATGAAGAAGTTGAAGCTAAGAAACGTGAAGCTGAGAAAGATCGAGCTCGTCGTGATCGTC 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 ATGAAGAAGTTGAAGCTAAGAAACGTGAAGCTGAGAAAGATCGAGCTCGTCGTGATCGTC 503
Query 489 TCTACAATAACAATCGTAACAATATTCATCAGCAACGCCGTGAAGCCGCCGCGTTTAAAT 548
| || ||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 504 TTTATAATAATAACCGTAACAATATTCATCAGCAACGTCGTGAAGCCGCGGCGTTTAAAT 563
Query 549 CATCAGTTGATATTCAACCGGAATGGAATATGCTTGAGCAGATTCCGTTTTCGACTTTCT 608
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 564 CATCAGTTGATATTCAACCGGAATGGAATATGCTTGAGCAGATTCCTTTTTCGACTTTCT 623
Query 609 CTAAGCTTTCGTTTACAGTTTC-TGAACCTGAAGATCTTCTTCTTTGTGGTGGACTTGAG 667
| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 624 CGAAGCTTTCGTTTACAG-TTCAAGAACCTGAAGATCTTCTTCTTTGTGGTGGACTTGAG 682
Query 668 TCTTATGATCGGAGTTTTGATCGTATTACTCCTAAAGCTGATCGTAGACTTGAGCGTTTC 727
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 683 TCTTATGATCGGAGTTATGATCGTATTACACCTAAAGCTGATCGTAGACTTGAGCGTTTC 742
Query 728 AAGAACAGAAGCTTTAAGGTTACTACAAGTGATGATCTTGTGATCAGACGTCTTGCTAAA 787
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 743 AAGAACAGGAGCTTTAAGGTTACTACAAGTGATGATCTTGTGATTAGACGTCTCGCTAAG 802
Query 788 GAAGATAAAGCTACTGTTTTTGCTACTGATGCTATTCTAGCTGCTCTTATGTGTGCTCCT 847
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 803 GAAGATAAAGCTACTGTTTTTGCTACTGATGCTATTCTTGCTGCTCTTATGTGTGCTCCT 862
Query 848 AGATCGGTTTATTCATGGGATCTTGTGATTCAACGTGTTGGGAATAAGCTTTTCTTTGAT 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 AGATCGGTTTATTCATGGGATCTTGTGATTCAACGTGTTGGGAATAAGCTTTTCTTTGAT 922
Query 908 AAGAGAGATGGGTCACCGCTTGATTTGTTATCTGTTCATGAGACTTCTCAAGAGCCTTTG 967
|||||||||||||| ||||| |||||||| ||||||||||| || |||||||||||||||
Sbjct 923 AAGAGAGATGGGTCGCCGCTAGATTTGTTGTCTGTTCATGAAACGTCTCAAGAGCCTTTG 982
Query 968 CCTGAGGGTAAAGATGATATTAACTCTGCTCATTCTCTAGGTCTGGAGGCTGCTTATATT 1027
||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 983 CCTGAAGCTAAAGATGATATTAACTCTGCTCATTCTCTAGGTGTGGAGGCTGCTTATATT 1042
Query 1028 AATCAGAATTTTGCTCAGCAGGTTTTGGTTAAGAATGGGAAAAGGGAAACTTTTGATGAG 1087
||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||
Sbjct 1043 AATCAGAATTTTGCTCAGCAGGTTTTGGTTAGGAATGGAAAAAGGGTAACTTTTGATGAG 1102
Query 1088 CCAATTCCTAATGTTAATGAAGGTGAAGAGAATGCTTCTATTGCTTATAGGTATAGGAGA 1147
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 CCGATTCCGAATGTTAATGAAGGTGAAGAGAATGCTTCTATTGCTTATAGGTATAGGAGA 1162
Query 1148 TGGAAGCTTGATGATAGTATGTATCTAGTTGCTAGGTGTGAGTTACAGAGCACTGTTGAT 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 TGGAAGCTTGATGATAGTATGTATCTAGTTGCTAGGTGTGAGTTACAGAGCACTGTTGAT 1222
Query 1208 TTGAATAACCAGAGATCGTTTTTAACTTTGAATGCTCTTAACGAGTTTGATCCTAAGTAC 1267
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1223 TTGAATAACCAGAGATCATTCTTAACTTTGAATGCTCTTAACGAGTTTGATCCTAAGTAC 1282
Query 1268 TCTGGTGTTGATTGGAGACAGAAGCTTGAGACTCAGAGAGGTGCGGTTTTAGCTAATGAG 1327
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1283 TCTGGTGTTGATTGGAGACAGAAGCTCGAGACTCAGAGAGGTGCGGTTTTAGCTAATGAG 1342
Query 1328 TTGAAGAACAATGGTAATAAGTTAGCTAAATGGACTGCGCAGGCTCTCTTGGCTAATGCG 1387
||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 1343 TTGAAGAACAATGGTAATAAGTTAGCTAAATGGACCGCACAGGCCCTCTTGGCTAATGCG 1402
Query 1388 GATATGATGAAGATTGGGTTTGTTTCGAGGGTTCATCCTCGTGATCATTTTAACCATGTT 1447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 GATATGATGAAGATTGGGTTTGTTTCGAGGGTTCATCCTCGTGATCATTTTAACCATGTT 1462
Query 1448 ATATTATCGGTTTTGGGGTATAAGCCGAAAGATTTCGCTGGGCAGATCAATCTGAACACT 1507
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1463 ATATTATCGGTTTTGGGGTATAAGCCGAAGGATTTCGCTGGGCAGATTAATCTGAACACT 1522
Query 1508 AACAATATGTGGGGAATTGTGAAGTCGATTGTTGATCTGTGTATGAAGTTAAGTGAAGGA 1567
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1523 AACAACATGTGGGGAATTGTGAAGTCGATTGTTGATCTGTGTATGAAGTTAAGTGAAGGA 1582
Query 1568 AAGTATGTTCTAGTGAAGGATCCATCGAAGCCTCAAGTTAGGATTTACGAAGTTCCGGCT 1627
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1583 AAGTATGTTCTAGTGAAGGATCCATCGAAGCCTCAAGTTAGGATTTACGAAGTTCCAGCT 1642
Query 1628 GATGCATTTGACAATGATTATGTGGAGGAGCCACTCCCTGAAGATGAACAGGTTCAGCCA 1687
||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1643 GATGCTTTTGACAATGATTATGTGGAGGAGCCTCTCCCTGAGGATGAACAGGTTCAGCCA 1702
Query 1688 CCTGAGGAGAACACTGATGCAGGAGCAGAGACTAATGGGGTTTCCTCTACTAATGTAGCT 1747
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1703 CCTGAGGAGAACACTGATGCAGGAGCAGAGACTAATGGTGCTTCCTCTACTAATGTAGCT 1762
Query 1748 GTAGAGGATAAGAAATCCGAAGTTGAAGCCTGATTTTGATGATATGGGTATATT 1801
| |||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1763 GCAGAGGATAAGAAATCCGAAGCTGAAGCCTGATTT-GATGATATGGGTATATT 1815
> Ahg492789 jgi|Araly1|492789|fgenesh2_kg.7__2222__AT4G20980.1
Length=2030
Score = 1692 bits (916), Expect = 0.0
Identities = 1484/1751 (85%), Gaps = 68/1751 (4%)
Strand=Plus/Plus
Query 6 TCTCAACAATGGT-GTTTGAAGCATTCGAAGTCGGCACAGTCCCATTCAATTCCGATGGT 64
|||||| |||||| | ||||| |||||| ||| | | || || ||||||||||||||
Sbjct 51 TCTCAAAAATGGTAG-CCGAAGCTTTCGAATTCGTCGCCGTTCCTTTCAATTCCGATGGC 109
Query 65 TGGGGACCACCAGATGCTTCCGA------C-ACT-----TCCTCCACCAGCGTCGCGGCG 112
||||| || ||||| |||||||| | || ||||||||||||||||| ||
Sbjct 110 TGGGGTCCTCCAGACGCTTCCGACGTTTCCTCCTCCGCCTCCTCCACCAGCGTCGCCGCC 169
Query 113 GCGAATCTCCTCCCAAACGTCCCCTTCGCTTCCTTCTCACGATCCGAAAAACTCGGACGC 172
|| ||||| ||||||||||| || |||||||||||||| || ||||| || ||||| ||
Sbjct 170 GCTAATCTTCTCCCAAACGTTCCTTTCGCTTCCTTCTCCCGTTCCGATAAGCTCGGCCGT 229
Query 173 GTTGCTGATTGGACTCG-AGCTCTCTCAAATCCATCAGCTCGTCCTCACACCGGATCCAA 231
|| |||||||||||||| | |||||| ||||| || |||||||||| ||||||||||||
Sbjct 230 GTAGCTGATTGGACTCGCA-ATCTCTCTAATCCCTCCGCTCGTCCTCCCACCGGATCCAA 288
Query 232 ATCAGATCCATCAGCGA-TCTTCGATTTCTCAGCTTTTGC-AGTAGATGAAGGATTTGGT 289
||||||||| || || | | ||||||||||| ||||| || | | || ||||||||||||
Sbjct 289 ATCAGATCCGTCTGC-AGTTTTCGATTTCTCCGCTTTCGCTA-TCGACGAAGGATTTGGT 346
Query 290 CTAACAAACTCAGGTGGAAA-CGCCGACGAAGACGCCGCTTTCCGAT-TAGTCGACGGAA 347
|| || ||| |||||||| | |||| || ||||| |||||||| | | |||||||| |
Sbjct 347 CTCACTTCCTCCGGTGGAAATC-CCGATGAGGACGCAGCTTTCCG-TCTCGTCGACGGTA 404
Query 348 AACCACCGCCGCGTCCTAAATTCGGACCTAAATGGAGATTCAATCAAT-ACCATAACCGA 406
|||| |||||||||||||||||||||||||||||| | ||||||| | |||| || ||
Sbjct 405 AACCTCCGCCGCGTCCTAAATTCGGACCTAAATGGCGTTTCAATC-CTCACCACAATCGG 463
Query 407 AATCAGCTTCCTCAACGTCGTGATGAAGAAGTTGAAGCTAAGAAACGTGAAGCTGAGAAA 466
||||||||||||||||| || ||||||||||| ||||||||||| ||||| ||||||||
Sbjct 464 AATCAGCTTCCTCAACGGCGAGATGAAGAAGTCGAAGCTAAGAAGCGTGACGCTGAGAAG 523
Query 467 GATCGAGCTCGTCGTGATCGTCTCTACAATAACAATCGTAACAATATTCATCAGCAACGC 526
|| |||||||||||||||||||||||||||||||| |||||||| || ||||| || |||
Sbjct 524 GAACGAGCTCGTCGTGATCGTCTCTACAATAACAACCGTAACAACATCCATCACCAGCGC 583
Query 527 CGTGAAGCCGCCGCGTTT-AAATCATCAGTTGATATTCAACCGGAATGGAATATGCTTGA 585
|||||||||||||| ||| |||||||| ||||||||||| ||||| ||||| ||||||||
Sbjct 584 CGTGAAGCCGCCGC-TTTCAAATCATCCGTTGATATTCAGCCGGAGTGGAACATGCTTGA 642
Query 586 GCAGATTCCGTTT-TCGACTTTCTCTAAGCTTTCGTTTACAGTTTC-TGAACCTGAAGAT 643
||||| ||| ||| || || ||||| ||||| ||||| |||| ||| ||||| ||||||
Sbjct 643 GCAGA-TCCCTTTCTCAACATTCTCGAAGCTCTCGTTCACAG-TTCAAGAACCAGAAGAT 700
Query 644 CTTCTTCTTTGTGGTGGACTTGAGT-CTTATGATCGGAGTTTT-GATCGTATTACTCCT- 700
|| ||||| |||||||| ||||||| | || | | | ||||| ||||| | || |||
Sbjct 701 CTACTTCTCTGTGGTGGCCTTGAGTAC-TA-CAACCGCGTTTTCGATCGCACAACGCCTA 758
Query 701 AAAGCTGATCGTAGACTTGAGCGTTTCAAGAACA-GAAGC-T-TT-AAGGTTACTACAAG 756
||| | || || ||||| |||||||||||||||| ||| | | || || || ||||| ||
Sbjct 759 AAAAC-GAACGCAGACTCGAGCGTTTCAAGAACAGGAA-CTTCTTCAAAGTCACTACGAG 816
Query 757 TGATGATCTTGTGATCAGACGTCTT-GCTAAAGAAGATAAAGCTACTGTTTTTGCTACTG 815
|||||||| |||||| || ||| || ||||| ||||| |||||||||||||| || ||||
Sbjct 817 TGATGATCCTGTGATTAGGCGT-TTAGCTAAGGAAGACAAAGCTACTGTTTTCGCAACTG 875
Query 816 ATGCTAT-TCTAGCTGCTCTTATGTGTGCTCCTAGATCGGTTTATTCATGGGATCTTGTG 874
||||||| | ||||||||||||||||||||||| |||| ||||| || |||||| ||||
Sbjct 876 ATGCTATAT-TAGCTGCTCTTATGTGTGCTCCTCGATCTGTTTACTCTTGGGATATTGTT 934
Query 875 ATTCAACGTGTTGGGAATAAGCTTTTCTTTGATAAGAGAGATGGGTCACCGCTTGATTTG 934
|||||||||||||| || || || |||||||| ||||||||||| |||| ||||||||||
Sbjct 935 ATTCAACGTGTTGGTAACAAACTGTTCTTTGACAAGAGAGATGGATCACAGCTTGATTTG 994
Query 935 TTATCTGTTCATGAGACTTCTCAAGAGCCTTTGCCTGAGGGTAAAGATGATATTAACTCT 994
| ||||| |||||||| ||||||||||| |||||||||| |||||||||||| || |||
Sbjct 995 CTGTCTGTGCATGAGACATCTCAAGAGCCATTGCCTGAGGCTAAAGATGATATCAATTCT 1054
Query 995 GCTCATTCTCTAGGTCTGGAGGCTGCTTATATTAATCAGAA-TTTTGCTCAGCAGGTTTT 1053
||| | ||||||||| |||| ||||||||||| |||||||| |||| | |||||||||||
Sbjct 1055 GCTTACTCTCTAGGTGTGGAAGCTGCTTATATCAATCAGAACTTTT-CGCAGCAGGTTTT 1113
Query 1054 GGTTAAGA-ATGGGAAA-AGGGAAACTTTTGATGA-GCCAATTCCTA-ATGTTAATGAAG 1109
|||| ||| || ||||| | ||||||||||||||| || || ||| | || ||||||||
Sbjct 1114 GGTT-AGAGAT-GGAAAGAAGGAAACTTTTGATGAGGCGAA-TCC-ATTTGCTAATGAAG 1169
Query 1110 GTGAAGAGAATGCTTCTATTGCTTATAGGTATAGGAGATGGAAGCTTGATGATAGTATGT 1169
||||||||| ||||||| |||||||||||||||| || |||||||||||||| | ||||
Sbjct 1170 GTGAAGAGATTGCTTCTGTTGCTTATAGGTATAGAAGGTGGAAGCTTGATGAGAATATGC 1229
Query 1170 ATCTAGTTGCTAGGTGTGAGTTACAGAGCACTGTTGATTTGAATAACCAGAGATCGTT-T 1228
|||| ||||| ||||||||||||||||| || |||| | ||||||||||| |||||
Sbjct 1230 ATCTTGTTGCGAGGTGTGAGTTACAGAGTGTTGCTGATCTCAATAACCAGAGGTCGTTCC 1289
Query 1229 TTAACTTTGAATGCTCTTAACGAGTTTGATCCTAAGTACTCTGGTGTTGATTGGAGACAG 1288
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1290 TT-ACTTTGAATGCTCTTAACGAGTTTGATCCTAAGTACTCTGGTGTTGATTGGAGGCAG 1348
Query 1289 AAGCTTGAGACTCAGAGAGGTGCGGTTTTAGCTAATGAGTTGAAGAACAATGGTAATAAG 1348
|||||||| |||||||||||||||||||| |||| || |||||||||||||| || |||
Sbjct 1349 AAGCTTGAAACTCAGAGAGGTGCGGTTTTGGCTACCGAATTGAAGAACAATGGGAACAAG 1408
Query 1349 TTAGCTAAATGGACTGCGCAGGCTCTCTTGGCTAATGCGGATATGATGAAGATTGGGTTT 1408
|| |||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||
Sbjct 1409 TTGGCTAAATGGACTGCACAAGCTCTCTTGGCTAATGCTGATATGATGAAGATTGGCTTT 1468
Query 1409 GTTTCGAGGGTTCATCCTCGTGATCATTTTAACCATGTTATATTATCGGTTTTGGGGTAT 1468
|| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1469 GTCTCTAGGGTTCATCCTCGTGATCATTTCAACCATGTTATATTATCTGTTTTGGGGTAT 1528
Query 1469 AAGCCGAAAGATTTCGCTGGGCAGATCAATCTGAACACTAAC-AATATGTGGGGAATTGT 1527
|||||||| ||||||||||| ||||| ||||| |||||| | || ||||||||||||||
Sbjct 1529 AAGCCGAAGGATTTCGCTGGACAGATTAATCTCAACACTT-CTAACATGTGGGGAATTGT 1587
Query 1528 GAAGTCGATTGTTGATCTGTGTATGAAG-TTAAGTGAAGG-AAAGTATGTTCTAGTGAAG 1585
||| || || ||||||||||||||||| ||| | ||||| ||| |||||||| ||||||
Sbjct 1588 GAAATCCATAGTTGATCTGTGTATGAAACTTA-GCGAAGGGAAA-TATGTTCTTGTGAAG 1645
Query 1586 GATCCATCGAAGCCTCAAGTTAGGATTTACGAAGTTCCGGCTGATGCATTTGACAATGAT 1645
|||||||||||||||||||| ||||||||||| ||||| ||||||| ||||| ||||||
Sbjct 1646 GATCCATCGAAGCCTCAAGTGAGGATTTACGAGGTTCCACCTGATGCGTTTGAGAATGAT 1705
Query 1646 TATGTGGAGGAGCCACTCCCTGAAGATGAACAGGTTCAGCCACCTGAGGAGAACACTGAT 1705
|| || ||||| || | |||||||||||||||||||||||| ||||||| ||| | ||
Sbjct 1706 TACGTTGAGGAACCGTTGCCTGAAGATGAACAGGTTCAGCCAACTGAGGAAAACGCAGA- 1764
Query 1706 GCAGGAGCAGA 1716
| ||||||||
Sbjct 1765 G--GGAGCAGA 1773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78694446170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5