BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44330.1
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915783 jgi|Araly1|915783|Al_scaffold_0008_534 1810 0.0
Ahg329509 jgi|Araly1|329509|fgenesh1_pm.C_scaffold_7001736 460 9e-129
> Ahg915783 jgi|Araly1|915783|Al_scaffold_0008_534
Length=1413
Score = 1810 bits (980), Expect = 0.0
Identities = 1272/1409 (90%), Gaps = 35/1409 (2%)
Strand=Plus/Plus
Query 1 ATGCGGCGTCGTGAGAGCCGTGGTGCTAAGGGAGGAGGTTTCTTGACTCCACCACCGTCA 60
||| ||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGTGGCGTCGCGAGAGCCGTGATGCTACGGGAGGAGGTTTCTTGACTCCACCACCGTCA 60
Query 61 TGGCACACGACGAGAAGAGTTTACATTGCGATGCCGATTTCGGAGAGGAAAAGATCACCT 120
||| |||||||||||||||||||| ||||||||||||| || ||||| ||||||||| ||
Sbjct 61 TGGAACACGACGAGAAGAGTTTACGTTGCGATGCCGATGTCAGAGAGAAAAAGATCATCT 120
Query 121 TTGATCGAGAATCAAGAATCGTTTAGGGTTCGTACTGGTGATTCTCCTTACGTCAGAGCC 180
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 TTGATCAAGAATCAAGAATCGTTTAGGGTTCCTACTGGTGATTCTCCTTACGTCAGAGCC 180
Query 181 AAACATGCTCAGTTGGTTTCTAAAGACCCGAATCGAGCTATCTCGTTGTTTTGGGCGGCG 240
|||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||
Sbjct 181 AAACATGCTCAGTTGGTTTCTAAAGATCCGGATCGAGCAATCTCGTTGTTTTGGGCTGCG 240
Query 241 ATTAATGCTGGAGATAGAGTTGATAGTGCATTGAAGGACATGGTAGTTGTTTTAAAACAG 300
||||||||||||||||||||||||||||||||||| | |||||||||||| | |||||
Sbjct 241 GTTAATGCTGGAGATAGAGTTGATAGTGCATTGAAGAATATGGTAGTTGTTCTGAAACAT 300
Query 301 TT-GAACCGATTCGATGAAGGAATCGAAGCTATCAAGTCTTTTCGATATCTCTGCCCTTT 359
|| || ||||| |||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 301 TTAGA-CCGATCCGATGAAGGAATCGAAGCTATCAAATCTTTTCGATATCTCTGTCCTTT 359
Query 360 TGAATCTCAAGATTCTATTGATAACTTGTTACTTGAACTCTACATGAAGTCTGGGAGGAT 419
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 360 TGAATCTCAAGATTCTATTGATAACTTGTTACTTGAACTCTACAAGAAGTCAGGGAGGAT 419
Query 420 TACAGAGGTCGCTGAGCTGCTTGAACACAAACTGAGAACACTTGAACAAGACAAACATTA 479
|||||||| |||||||| ||||||||||||||||||||||||||||| |||| || ||
Sbjct 420 TACAGAGGAAGCTGAGCTACTTGAACACAAACTGAGAACACTTGAACATGACACGCACTA 479
Query 480 TGGTGGCAGGATCAAAATAGCGAAAAGAAGCCATGAGGAGCAGAATAACAAGACAATCGA 539
|||||||||||| |||||||||||||||||||| | ||||||||| |||| ||| |||||
Sbjct 480 TGGTGGCAGGATGAAAATAGCGAAAAGAAGCCACGGGGAGCAGAACAACATGACTATCGA 539
Query 540 GCAAGAGAAAGCACGGATTCTAGGGAACTTAGCTTGGGTTCACTTACAGCTTCATAACTA 599
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GCAAGAGAAAGCGCAGATTCTAGGGAACTTAGCTTGGGTTCACTTACAGCTTCATAACTA 599
Query 600 TGGAATTGCAGAGCAGTATTACAGGAATGCTTTGTCTTTGGAACCTGACAATAACAAGTT 659
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 TGGAATCGCAGAGCAGTATTACAGGAATGCTTTGTCTTTGGAGCCTGACAATAACAAGTT 659
Query 660 GTGCAATCTTGCAATCTGTTTGATACGTATGGAAAGAA-CCCATGAAGCTAAATCTCTGC 718
|||||||||||| |||||||| || |||||||| |||| ||| ||||||||| ||||||
Sbjct 660 GTGCAATCTTGCGATCTGTTTAATGCGTATGGATAGAATCCCG-GAAGCTAAACCTCTGC 718
Query 719 TTGAGGATGTAAAACAGTCTCTAGGGAATCAATGGAAGA-ATGAACCGTTTTGCAAGTCT 777
|||||||||||| |||||||||||| |||||||||||| | ||||||||| | || |||
Sbjct 719 TTGAGGATGTAAGACAGTCTCTAGGAAATCAATGGAAGGGA-GAACCGTTTCGAAACTCT 777
Query 778 TTTGAACGGGCTACTGAGATGTTAGCAGAAAGAGAACAAGCAACAGTAGCGGATAAACCA 837
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 778 TTTGAACGGGCTACTGAGATGTTAGCAGAAAGAGAACGAGCAACAGTAGCGGATAAACCA 837
Query 838 GAAGATTTGCTGACAAGTAGCTTTTCAGATAACTTCTCTTCGAGATGTTCA-GGTGGGAT 896
||||||||| |||||||||||| ||||||||||||||||||||| |||||| || |||||
Sbjct 838 GAAGATTTGTTGACAAGTAGCTCTTCAGATAACTTCTCTTCGAGGTGTTCAAGG-GGGAT 896
Query 897 GAAAGGAAAGAAGGCTCTAGCTGGAACTAGCACTGAACTGGGTAATATTCACAAGACAAA 956
||||||||| |||||||||| |||||||||||||||||||||||| ||| ||||||| |
Sbjct 897 GAAAGGAAACAAGGCTCTAGTTGGAACTAGCACTGAACTGGGTAACATTTACAAGACGAG 956
Query 957 CTCGCATGCTTCCTCTGAATCGGTTGAACAAAACTCACCAGGTCTGACTACACAACCCCG 1016
|||||||| ||||||||||||||||||||||||||| ||| ||||| ||||||||||||
Sbjct 957 CTCGCATGTTTCCTCTGAATCGGTTGAACAAAACTCGCCATATCTGATTACACAACCCCG 1016
Query 1017 GGAATGTAAATGGGTAGATGAGGAAGTAGATCAGAGTAAATGGGATGCGACAATTGGTGC 1076
||||||||||||| ||||||||||||| |||||| |||||||||||| |||||||||||
Sbjct 1017 AGAATGTAAATGGGGAGATGAGGAAGTAAATCAGAATAAATGGGATGCAACAATTGGTGC 1076
Query 1077 TTCTCGAAAGCTCAGGTTCTGGACAGTTGGTCCTGTTCGTAGTCTAAGATTCGGTAATGA 1136
| |||||| ||| |||||| ||||||||||||||| ||| || ||||| ||||| ||| |
Sbjct 1077 TACTCGAAGGCTGAGGTTCGGGACAGTTGGTCCTGCTCGAAGGCTAAGGTTCGGGAATCA 1136
Query 1137 TTATCAGAAGAACTTGAAGAGTGTAGGAACAGCAGCCTCGACTACTAATG--A------- 1187
||||||||||||||||||||||||||||||| |||| ||||||||||||| |
Sbjct 1137 TTATCAGAAGAACTTGAAGAGTGTAGGAACATCAGCTTCGACTACTAATGGGAAGAAATT 1196
Query 1188 ----C-GAA-----CTG-C-A--TC-A--A-TTCATCAGTAGTGATGCAGATTGCATGAC 1229
| ||| ||| | | || | | |||||||||||||||||||||||| ||||
Sbjct 1197 GGGTCAGAATTTGACTGACGAACTCCATCAATTCATCAGTAGTGATGCAGATTGCGTGAC 1256
Query 1230 AAGCAAAGCAAGGAAGCTGTGTCCAGAATTGATCAAAGATAAGGAAGATAACGAAAAAGA 1289
|||||||||||||||| ||||| |||| || |||||||| |||||||||||||||||||
Sbjct 1257 AAGCAAAGCAAGGAAGTTGTGTGCAGATTTAATCAAAGAAAAGGAAGATAACGAAAAAGT 1316
Query 1290 AAGTGAAAGAATTGCTTCAGAATCTTCTTCAGCTTACGCTAAGATCACAGACATTGGTCA 1349
|||||||||||||||||||||||||||| ||||||||||||||| || ||||||||| |
Sbjct 1317 AAGTGAAAGAATTGCTTCAGAATCTTCTACAGCTTACGCTAAGACCATGGACATTGGTGA 1376
Query 1350 AAGAAAGGTTCTTCACATTGATCAAAGAA 1378
|||||||||||||||||||| || |||||
Sbjct 1377 AAGAAAGGTTCTTCACATTGGTCGAAGAA 1405
> Ahg329509 jgi|Araly1|329509|fgenesh1_pm.C_scaffold_7001736
Length=1281
Score = 460 bits (249), Expect = 9e-129
Identities = 550/691 (80%), Gaps = 38/691 (5%)
Strand=Plus/Plus
Query 147 GGTTCGTACTGGTGATTCTCCTTACGTCAGAGCCAAACATGCTCAGTTGGTTTCTAAAGA 206
||||| | |||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 165 GGTTCCTTCTGGTGATTCTCCTTACGTCAGAGCCAAACATGCGCAGTTGATAGATAAAGA 224
Query 207 CCCGAATCGAGCTATCTCGTTGTTTTGGGCGGCGATTAATGCTGGAGATAGAGTTGATAG 266
|||||| ||||||| || ||||||||| | || || || ||||||||| ||||||||||
Sbjct 225 TCCGAATAGAGCTATATCATTGTTTTGGACTGCAATAAACGCTGGAGATCGAGTTGATAG 284
Query 267 TGCATTGAAGGACATGGTAGTTGTTTTAAAACAGTT-GAACCGAT-TCGATGAAGGAATC 324
||| |||||||||||||||||||| | |||||||| || ||||| | || ||||||||
Sbjct 285 TGCTTTGAAGGACATGGTAGTTGTAATGAAACAGTTAGA-CCGATCT-GACGAAGGAATT 342
Query 325 GAAGCTATCA-AGTCTTTTCGATATCTCTGCCCTTTTGAATCTCAAGATTCTATTGATAA 383
||||| |||| | || ||||| |||||||| |||| || |||||||| || ||||||||
Sbjct 343 GAAGCCATCAGA-TCCTTTCGGTATCTCTGTTCTTTCGAGTCTCAAGACTCCATTGATAA 401
Query 384 CTTGTTACTTGAACTCTACATGAAGTCTGGGAGGATT-ACAGAGGTCGCTGAGCTGCTTG 442
|||| |||| |||||||||| ||||| ||||||||| | ||| | |||||| | ||||
Sbjct 402 CTTGCTACTCGAACTCTACAAAAAGTCAGGGAGGATTGA-AGAAGAAGCTGAGTTACTTG 460
Query 443 AACACAAACTGAGAACACTTGAACAAGACAAAC--ATTATGGTGGCAG-GATCAAAATAG 499
| ||||| |||| |||||| ||||||| || ||| ||| || || | ||| | ||
Sbjct 461 AGCACAAGCTGAAAACACTCGAACAAGG-AATGGGATT-TGGAGGTAGAG-TCATTAGAG 517
Query 500 CGAAAAGAAGC-CATGAGGAGCAGAA-TAACAA-GACAATCGAGCAAGAGAAAGCACGGA 556
| ||||| | || |||| | | | |||| ||| |||||||||||||||||| ||
Sbjct 518 CTAAAAGG-GTTCA--AGGAAAACATGTTACAATGACTATCGAGCAAGAGAAAGCAAGGG 574
Query 557 T-TCTAGGGAACTTAG-CTTGGGTTCACTTACAGCTT-CATAACTATGGAATTGCAGAGC 613
| | |||||||||| | || ||||||| |||||| || ||||||||||||||||||||||
Sbjct 575 TAT-TAGGGAACTTGGGCT-GGGTTCATTTACAG-TTACATAACTATGGAATTGCAGAGC 631
Query 614 AGTATTACAGGA-ATGCTTTGTCTTTGGAACCTGACAATAACAAGTTGTGCAATCTTGCA 672
|| ||||||||| | |||||| |||||| | ||||| ||||| ||||||| ||||||
Sbjct 632 AGCATTACAGGAGA-GCTTTGGGTTTGGAGCGAGACAAAAACAAACTGTGCAACCTTGCA 690
Query 673 ATCTGTTTGATACGTATGGAAAGAAC-CCATGAAGCTAAATCTCTGCTTGAGGATGTAAA 731
||||| ||||| ||||||| ||| || ||||||||||||||| ||||| |||||||
Sbjct 691 ATCTGCTTGATGCGTATGGGTCGAATTCC-TGAAGCTAAATCTCTTCTTGATGATGTAAG 749
Query 732 ACAGTCT-CTAGGGA-A-TCAATG-GAAGAATGAACCGTTTTGCAA-GTCTTTTGAACGG 786
| | ||| ||| || | | |||| | ||| |||||| || ||| ||||| ||| ||
Sbjct 750 AGATTCTTCTACAGAGAGTGAATGTGGAGA-TGAACCATTCA-CAAAGTCTTATGACCGA 807
Query 787 GCTACTGAGATGTTAGCAGAAAGAGAA-CAA 816
|| ||||||||||||||| | |||| |||
Sbjct 808 GCCGTTGAGATGTTAGCAGACATAGAATCAA 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52716899080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5