BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G44345.1

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg948686 jgi|Araly1|948686|scaffold_800573.1                        215    3e-55


> Ahg948686 jgi|Araly1|948686|scaffold_800573.1
Length=651

 Score =  215 bits (116),  Expect = 3e-55
 Identities = 141/153 (92%), Gaps = 1/153 (1%)
 Strand=Plus/Plus

Query  391  GAAGGGGATGCTTACTTACGCCTTGTTGGAGTGACTCAGAGAAATGAAATTGTGTTGGCG  450
            ||||||| ||||||||||||| |||||||||||||||| | |||||||||||||||||||
Sbjct  448  GAAGGGG-TGCTTACTTACGCTTTGTTGGAGTGACTCATACAAATGAAATTGTGTTGGCG  506

Query  451  ACGTGCTATGCTGTGCCTTTCTACCTCTTCTACTACAATATGGAGAGAAAGACAATCATA  510
             ||| || |  |||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct  507  TCGTCCTTTATTGTGCCTTTCGACCTCTTCTACTACAATATGGAGAAAAAGACAATCATA  566

Query  511  AGACTTCAAATCCAAGGAATGGAAGTTTTTCCT  543
            ||||||||||||||||||||||||| |||||||
Sbjct  567  AGACTTCAAATCCAAGGAATGGAAGATTTTCCT  599



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19917217458


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5