BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G44350.1 Length=1188 Score E Sequences producing significant alignments: (Bits) Value Ahg494551 jgi|Araly1|494551|fgenesh2_kg.8__367__AT5G44350.1 1447 0.0 > Ahg494551 jgi|Araly1|494551|fgenesh2_kg.8__367__AT5G44350.1 Length=1196 Score = 1447 bits (783), Expect = 0.0 Identities = 1082/1218 (89%), Gaps = 54/1218 (4%) Strand=Plus/Plus Query 1 AGAAACTTCATCAATCTCTCTTCCAACAAAAACCCTAACCCTAATTCTCTCAAGACAACT 60 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 AGAAACTTCATCAATCTCTCTTCTAACAAAAACCCTAACCCTAATTCTCTCAAGACAACT 60 Query 61 CAAAGGTCTCTCCTTTTTTAGGTTTATTATCACTTCCGTATAATCGCCATGTCTTCTCTA 120 |||||||||||| |||||| ||||| | ||| |||||||| ||||||||||||| || | Sbjct 61 CAAAGGTCTCTCATTTTTTGGGTTT-T-ATCTCTTCCGTACAATCGCCATGTCT-CT--A 115 Query 121 CCATGGAAAAAACCAAAATCGAGTCGAATCTTAAGATTCATTTCTGAGTTTCAACAATCA 180 |||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||| Sbjct 116 CCATGGAAAAAACCTAAATCAAGTCGAATCTTAAGATTCATGTCGGAGTTTCAACAATCT 175 Query 181 CCGTTCGTTGAAACTGGCTTTCCAACTTCTCTGATCGATCTCTTCTTCAAGAATCGCGAT 240 |||||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||| Sbjct 176 CCGTTCGTTGAAACTGGCTTCCCAACTTCTTTAATCGATCTCTTCTTCAAAAATCGCGAT 235 Query 241 CGTCTaaaaaaaTCTCCATCTAAACGCTTCCAACGAATCGAACGCCAGATTCGAACCGCT 300 ||||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||| Sbjct 236 CGTCTCAAAAAATCTCCGTCTAAACGCTTCAAACGAATCGAACGCCAGATTCAAACCGCT 295 Query 301 CCAAACGCTTCTTCGTTGAGTAATCAAGATACGATTTTTGAAAAGCCCTCGAGGATTAAA 360 |||||||||||||| |||| |||||||||| || |||| ||||||||| || |||||||| Sbjct 296 CCAAACGCTTCTTCTTTGACTAATCAAGATGCGGTTTTGGAAAAGCCCACGGGGATTAAA 355 Query 361 ACCGTTCGAAGTAAGGTCGAGAAAGTTAATTGCGTTAAAGGTAAATCAGCGGCGTTGAAG 420 |||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 356 ACCGTTCGGAGTAAGATCGAGAAAGTTAATTGCGTTAAAGGTAAATCAGCGGCGGAGAAG 415 Query 421 AAGAACGCGATTAAAAATAGCGTTTTCG---G---CGGTAGCGGTGAGGTCGTTTTGATG 474 ||| ||||||||||||||||||||| || | |||| |||| ||||||||||||||| Sbjct 416 AAGCACGCGATTAAAAATAGCGTTTGCGTTTGTGGCGGTGGCGGCGAGGTCGTTTTGATG 475 Query 475 GCGTTTAAGGTTTTGATAGTAGCGTTGCTCGCCTTGAGCACGAAGAAGAAGCTCACTTTA 534 |||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||| || Sbjct 476 GCGTTTAAGGTTTTAATAGTGGCGTTGCTTGCCTTGAGCACGAAGAAGAAGCTTACTATA 535 Query 535 GGAATCACTCTCTCTGCCTTCGCTCTTCTCTTAACAGAGCTCGTGGCGGCGCGTGTTTTC 594 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 536 GGAATCACTCTCTCCGCCTTCGCTCTTCTCTTAACAGAGCTCGTGGCGGCGCGTGTGTTC 595 Query 595 ACGCGCTCTAA--T----AACACCGACAAAGACAAAAACGCGATTGCCCGCGAGAAAAT- 647 ||||||||||| | ||||||| ||||||||||||||||||| ||||||| ||||| Sbjct 596 ACGCGCTCTAAGCTCTTTAACACCGGCAAAGACAAAAACGCGATTTCCCGCGAAAAAATA 655 Query 648 --CGAAACTTTTGATGAAACTCGAGTTCCCAAAGCGATTCCATGTCCTGAGGAAACAGAG 705 ||||||||||||||||||||||||||| | || || | ||||||||||| Sbjct 656 ATCGAAACTTTTGATGAAACTCGAGTTCCT---G--ATG---TG-C---AGGAAACAGAG 703 Query 706 CATGTAGTATCTGAAACAGAGGTTTCGAAGTTGAAAGGTTTAACGATACGTGATCTGTTG 765 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 704 CATGTAGTAGCTGAAACAGAGGTTTCGAAGTTGAAAGGTTTAACGATTCGTGATCTGTTG 763 Query 766 TCAAAGGACGAGAAATCAACAAGTAAAAGTTGGAGACTAAAATCGAAGATTGTGAAGAAG 825 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 764 TTAAAGGACGAGAAATCAACAAGTAAAAGTTGGAGACTAAAATCGAAGATTGTGAAGAAG 823 Query 826 TTGAGGAGTTACAATAAGAAG--GAT-AAGAAGACGATGAAGATCAAAGAAGAGTCTTTG 882 || |||||||||||||| ||| || |||||||| |||| ||||||||||||||||||| Sbjct 824 TTAAGGAGTTACAATAATAAGAAGACGAAGAAGACAATGATGATCAAAGAAGAGTCTTTG 883 Query 883 ATTGAAGTCTCGAGTTTGGTTTTAGAAGATAAACCAAAGAAAATTGAGTCTGAGAGAGAC 942 |||||||||||||||||||||||||||||||||||||| ||| |||| || ||||||||| Sbjct 884 ATTGAAGTCTCGAGTTTGGTTTTAGAAGATAAACCAAATAAAGTTGACTCCGAGAGAGAC 943 Query 943 GAAGAAGAAACGTTGAATCCTCCAGTGGTTG-GATCAAACC-TGA-A---TG---G-GAT 992 ||||| | |||| ||||||||| || | | || |||| ||| | || | ||| Sbjct 944 CAAGAA-A--CGTTAAATCCTCCATTGAT-GAGAACAAATGGTGATAAAATGAATGTGAT 999 Query 993 TGTTCTGATCGTGATTGTGCTAACCGGTTTGTTATGTGGGAAGGTCTTAGCTATTGTTCT 1052 ||||||||||||||| ||||| || |||||||||||||| ||| ||||||| |||||| | Sbjct 1000 TGTTCTGATCGTGATAGTGCTTACTGGTTTGTTATGTGGAAAGATCTTAGCCATTGTTTT 1059 Query 1053 GACACTATCATGTTTGGTTCTTAGATTAGGAGCAGTCAAAAAAGT-TAATCTTTGCATAT 1111 |||||||| ||||||||||||||||| |||| |||||||||| | |||||||||||||| Sbjct 1060 AACACTATCCTGTTTGGTTCTTAGATTTGGAGAAGTCAAAAAAATATAATCTTTGCATAT 1119 Query 1112 AAttttttttgtat-tttttAA-CATGCTTGCATGTGAAACTGTAAATTTTTCTCATTC- 1168 || |||||| |||| ||||||| |||| |||||| ||||||||||| ||||||| ||| Sbjct 1120 AAATTTTTT-GTATATTTTTAAACATGTTTGCATATGAAACTGTAATTTTTTCTTATTTT 1178 Query 1169 ATATGAAGGAGATTGGAT 1186 |||||||||||||||||| Sbjct 1179 ATATGAAGGAGATTGGAT 1196 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44336952471 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5