BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44350.1
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494551 jgi|Araly1|494551|fgenesh2_kg.8__367__AT5G44350.1 1447 0.0
> Ahg494551 jgi|Araly1|494551|fgenesh2_kg.8__367__AT5G44350.1
Length=1196
Score = 1447 bits (783), Expect = 0.0
Identities = 1082/1218 (89%), Gaps = 54/1218 (4%)
Strand=Plus/Plus
Query 1 AGAAACTTCATCAATCTCTCTTCCAACAAAAACCCTAACCCTAATTCTCTCAAGACAACT 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAACTTCATCAATCTCTCTTCTAACAAAAACCCTAACCCTAATTCTCTCAAGACAACT 60
Query 61 CAAAGGTCTCTCCTTTTTTAGGTTTATTATCACTTCCGTATAATCGCCATGTCTTCTCTA 120
|||||||||||| |||||| ||||| | ||| |||||||| ||||||||||||| || |
Sbjct 61 CAAAGGTCTCTCATTTTTTGGGTTT-T-ATCTCTTCCGTACAATCGCCATGTCT-CT--A 115
Query 121 CCATGGAAAAAACCAAAATCGAGTCGAATCTTAAGATTCATTTCTGAGTTTCAACAATCA 180
|||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 116 CCATGGAAAAAACCTAAATCAAGTCGAATCTTAAGATTCATGTCGGAGTTTCAACAATCT 175
Query 181 CCGTTCGTTGAAACTGGCTTTCCAACTTCTCTGATCGATCTCTTCTTCAAGAATCGCGAT 240
|||||||||||||||||||| ||||||||| | ||||||||||||||||| |||||||||
Sbjct 176 CCGTTCGTTGAAACTGGCTTCCCAACTTCTTTAATCGATCTCTTCTTCAAAAATCGCGAT 235
Query 241 CGTCTaaaaaaaTCTCCATCTAAACGCTTCCAACGAATCGAACGCCAGATTCGAACCGCT 300
||||| ||||||||||| |||||||||||| ||||||||||||||||||||| |||||||
Sbjct 236 CGTCTCAAAAAATCTCCGTCTAAACGCTTCAAACGAATCGAACGCCAGATTCAAACCGCT 295
Query 301 CCAAACGCTTCTTCGTTGAGTAATCAAGATACGATTTTTGAAAAGCCCTCGAGGATTAAA 360
|||||||||||||| |||| |||||||||| || |||| ||||||||| || ||||||||
Sbjct 296 CCAAACGCTTCTTCTTTGACTAATCAAGATGCGGTTTTGGAAAAGCCCACGGGGATTAAA 355
Query 361 ACCGTTCGAAGTAAGGTCGAGAAAGTTAATTGCGTTAAAGGTAAATCAGCGGCGTTGAAG 420
|||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 356 ACCGTTCGGAGTAAGATCGAGAAAGTTAATTGCGTTAAAGGTAAATCAGCGGCGGAGAAG 415
Query 421 AAGAACGCGATTAAAAATAGCGTTTTCG---G---CGGTAGCGGTGAGGTCGTTTTGATG 474
||| ||||||||||||||||||||| || | |||| |||| |||||||||||||||
Sbjct 416 AAGCACGCGATTAAAAATAGCGTTTGCGTTTGTGGCGGTGGCGGCGAGGTCGTTTTGATG 475
Query 475 GCGTTTAAGGTTTTGATAGTAGCGTTGCTCGCCTTGAGCACGAAGAAGAAGCTCACTTTA 534
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||| ||
Sbjct 476 GCGTTTAAGGTTTTAATAGTGGCGTTGCTTGCCTTGAGCACGAAGAAGAAGCTTACTATA 535
Query 535 GGAATCACTCTCTCTGCCTTCGCTCTTCTCTTAACAGAGCTCGTGGCGGCGCGTGTTTTC 594
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 536 GGAATCACTCTCTCCGCCTTCGCTCTTCTCTTAACAGAGCTCGTGGCGGCGCGTGTGTTC 595
Query 595 ACGCGCTCTAA--T----AACACCGACAAAGACAAAAACGCGATTGCCCGCGAGAAAAT- 647
||||||||||| | ||||||| ||||||||||||||||||| ||||||| |||||
Sbjct 596 ACGCGCTCTAAGCTCTTTAACACCGGCAAAGACAAAAACGCGATTTCCCGCGAAAAAATA 655
Query 648 --CGAAACTTTTGATGAAACTCGAGTTCCCAAAGCGATTCCATGTCCTGAGGAAACAGAG 705
||||||||||||||||||||||||||| | || || | |||||||||||
Sbjct 656 ATCGAAACTTTTGATGAAACTCGAGTTCCT---G--ATG---TG-C---AGGAAACAGAG 703
Query 706 CATGTAGTATCTGAAACAGAGGTTTCGAAGTTGAAAGGTTTAACGATACGTGATCTGTTG 765
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 704 CATGTAGTAGCTGAAACAGAGGTTTCGAAGTTGAAAGGTTTAACGATTCGTGATCTGTTG 763
Query 766 TCAAAGGACGAGAAATCAACAAGTAAAAGTTGGAGACTAAAATCGAAGATTGTGAAGAAG 825
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 TTAAAGGACGAGAAATCAACAAGTAAAAGTTGGAGACTAAAATCGAAGATTGTGAAGAAG 823
Query 826 TTGAGGAGTTACAATAAGAAG--GAT-AAGAAGACGATGAAGATCAAAGAAGAGTCTTTG 882
|| |||||||||||||| ||| || |||||||| |||| |||||||||||||||||||
Sbjct 824 TTAAGGAGTTACAATAATAAGAAGACGAAGAAGACAATGATGATCAAAGAAGAGTCTTTG 883
Query 883 ATTGAAGTCTCGAGTTTGGTTTTAGAAGATAAACCAAAGAAAATTGAGTCTGAGAGAGAC 942
|||||||||||||||||||||||||||||||||||||| ||| |||| || |||||||||
Sbjct 884 ATTGAAGTCTCGAGTTTGGTTTTAGAAGATAAACCAAATAAAGTTGACTCCGAGAGAGAC 943
Query 943 GAAGAAGAAACGTTGAATCCTCCAGTGGTTG-GATCAAACC-TGA-A---TG---G-GAT 992
||||| | |||| ||||||||| || | | || |||| ||| | || | |||
Sbjct 944 CAAGAA-A--CGTTAAATCCTCCATTGAT-GAGAACAAATGGTGATAAAATGAATGTGAT 999
Query 993 TGTTCTGATCGTGATTGTGCTAACCGGTTTGTTATGTGGGAAGGTCTTAGCTATTGTTCT 1052
||||||||||||||| ||||| || |||||||||||||| ||| ||||||| |||||| |
Sbjct 1000 TGTTCTGATCGTGATAGTGCTTACTGGTTTGTTATGTGGAAAGATCTTAGCCATTGTTTT 1059
Query 1053 GACACTATCATGTTTGGTTCTTAGATTAGGAGCAGTCAAAAAAGT-TAATCTTTGCATAT 1111
|||||||| ||||||||||||||||| |||| |||||||||| | ||||||||||||||
Sbjct 1060 AACACTATCCTGTTTGGTTCTTAGATTTGGAGAAGTCAAAAAAATATAATCTTTGCATAT 1119
Query 1112 AAttttttttgtat-tttttAA-CATGCTTGCATGTGAAACTGTAAATTTTTCTCATTC- 1168
|| |||||| |||| ||||||| |||| |||||| ||||||||||| ||||||| |||
Sbjct 1120 AAATTTTTT-GTATATTTTTAAACATGTTTGCATATGAAACTGTAATTTTTTCTTATTTT 1178
Query 1169 ATATGAAGGAGATTGGAT 1186
||||||||||||||||||
Sbjct 1179 ATATGAAGGAGATTGGAT 1196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44336952471
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5